>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 138

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 23/24 (95%), Positives = 23/24 (95%)
 Frame = +1

Query: 526 KGVYQFVDKYGANVDGYSPIYTPE 597
           KGVYQF DKYGANVDGYSPIYTPE
Sbjct: 73  KGVYQFADKYGANVDGYSPIYTPE 96

>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 140

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 22/24 (91%), Positives = 22/24 (91%)
 Frame = +1

Query: 526 KGVYQFVDKYGANVDGYSPIYTPE 597
           KGVYQFVDKYGANVDGYSPIY  E
Sbjct: 75  KGVYQFVDKYGANVDGYSPIYNEE 98

>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor|
           (PII10)
          Length = 136

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = +1

Query: 526 KGVYQFVDKYGANVDGYSPIYTPE 597
           KGVYQFVDKYGANVDGYSPIY  +
Sbjct: 71  KGVYQFVDKYGANVDGYSPIYNTD 94

>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor|
           (Light-inducible tissue-specific ST-LS1 protein)
          Length = 138

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 20/24 (83%), Positives = 22/24 (91%)
 Frame = +1

Query: 526 KGVYQFVDKYGANVDGYSPIYTPE 597
           KGVYQ+VDKYGANVDGYSPIY  +
Sbjct: 73  KGVYQYVDKYGANVDGYSPIYNTD 96

>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 138

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 20/24 (83%), Positives = 22/24 (91%)
 Frame = +1

Query: 526 KGVYQFVDKYGANVDGYSPIYTPE 597
           KGVYQ+VDKYGANVDGYSPIY  +
Sbjct: 73  KGVYQYVDKYGANVDGYSPIYNTD 96

>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 141

 Score = 46.2 bits (108), Expect = 7e-05
 Identities = 19/23 (82%), Positives = 21/23 (91%)
 Frame = +1

Query: 529 GVYQFVDKYGANVDGYSPIYTPE 597
           GVY+FVDKYGANVDGYSPIY  +
Sbjct: 77  GVYKFVDKYGANVDGYSPIYNED 99

>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 140

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 18/20 (90%), Positives = 20/20 (100%)
 Frame = +1

Query: 529 GVYQFVDKYGANVDGYSPIY 588
           GVY++VDKYGANVDGYSPIY
Sbjct: 76  GVYKYVDKYGANVDGYSPIY 95

>RNH1_CRIFA (Q07762) Ribonuclease H (EC 3.1.26.4) (RNase H)|
          Length = 494

 Score = 32.7 bits (73), Expect = 0.82
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = +1

Query: 403 SDTVLVSTINDADQGSADVAYRTPPAPYEKSSFAVVCSGGKKGVYQFVDKYGANVDGYS 579
           S  V V+       G    +   PPA   K SF VV  G ++G+Y   D+    V G+S
Sbjct: 124 SQKVGVAPTTSRASGETRTSCAPPPASRMKPSFYVVAVGRQRGIYSTWDQCSEQVKGFS 182

>MIM1_CHICK (P08940) Myeloid protein 1 precursor (p33)|
          Length = 326

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 469 TPPAPYEKSSFAVVCSGGKKGVYQFVDKYGANVDG 573
           +PP P + + +AVVC+G      +  DKYG    G
Sbjct: 172 SPPFPQQDAHWAVVCAGNPTNEIRGCDKYGCGYFG 206

>RAB36_HUMAN (O95755) Ras-related protein Rab-36|
          Length = 333

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 33  SWTLGRVGRSASRRAPTYSTLRPASRS 113
           SW LGR   S ++  PT ST+R A RS
Sbjct: 7   SWMLGRAAASPTQTPPTTSTIRVARRS 33

>CY552_THIFE (P74917) Cytochrome c-552 precursor (Cytochrome c552)|
          Length = 230

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = +1

Query: 436 ADQGSADVAYRTPPAPYEKSSFAVVCSG--GKKGVYQFVDKYGANVDGY 576
           A Q SA V     PAPY  SS  +VC G  G+  +Y  V +       Y
Sbjct: 41  AGQASAAVGSADAPAPYRVSSDCMVCHGMTGRDTLYPIVPRLAGQHKSY 89

>CP1A1_RABIT (P05176) Cytochrome P450 1A1 (EC 1.14.14.1) (CYPIA1) (P450 isozyme|
           6) (P-450 PHPAH1) (P450 LM6)
          Length = 518

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = -1

Query: 254 RSRRPTQ*DRNPMMLSHANVSRAMACFEHSNFFKVTMPKTRPGQLRLGARCRPKGR 87
           R+RRP   DR  +    A +   M  F H++F   T+P +      LG    PKGR
Sbjct: 357 RARRPRFSDRPQLPYLEAVI---METFRHTSFLPFTIPHSTTRDTSLGGFYIPKGR 409

>NEU1_CATCO (P15210) Isoticin-neurophysin IT 1 precursor [Contains: Isotocin|
           (IT); Neurophysin IT 1]
          Length = 154

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 345 SICQGCFH*SRTKVGGSKTIRYRPSLNHKRCRPGIGGCC 461
           S+C  C+  S   +GG + I+  PS     C PG  G C
Sbjct: 16  SVCSACYI-SNCPIGGKRAIQDSPSRQCMSCGPGDRGRC 53


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,286,903
Number of Sequences: 219361
Number of extensions: 1778008
Number of successful extensions: 4299
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4298
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5253413348
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)