ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd13p03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_466918.1| Oryza sativa (japonica cultivar-group), mRNA 339 6e-90
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 339 6e-90
3dbj|AP004192.3| Oryza sativa (japonica cultivar-group) genomic D... 339 6e-90
4dbj|AP004069.2| Oryza sativa (japonica cultivar-group) genomic D... 339 6e-90
5dbj|AK101737.1| Oryza sativa (japonica cultivar-group) cDNA clon... 339 6e-90
6dbj|AK106596.1| Oryza sativa (japonica cultivar-group) cDNA clon... 236 6e-59
7gb|AC118932.7| Mus musculus chromosome 5, clone RP24-147H20, com... 44 0.47
8gb|AC157928.4| Mus musculus chromosome 5, clone RP24-119I9, comp... 44 0.47
9dbj|AK032760.1| Mus musculus 12 days embryo male wolffian duct i... 44 0.47
10dbj|AB063124.1| Coturnix japonica DNA, microsatellite locus GUJ0056 42 1.9
11gb|AC168049.2| Mus musculus BAC clone RP23-246L6 from chromosome... 40 7.3
12gb|AC125110.4| Mus musculus BAC clone RP24-235E14 from chromosom... 40 7.3
13gb|AC067964.18| Mus Musculus Strain C57BL6/J Chromosome 5 RP23-3... 40 7.3
14gb|AC077689.9| Mus Musculus Strain C57BL6/J Chromosome 5 RP23-30... 40 7.3
15gb|AF067845.1|AF067845 Homo sapiens clone P1-4248, complete sequ... 40 7.3
16gb|AC162939.6| Mus musculus BAC clone RP23-97G12 from chromosome... 40 7.3
17gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete ge... 40 7.3
18gb|AC110288.10| Homo sapiens chromosome 8, clone CTD-2281E23, co... 40 7.3

>ref|XM_466918.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1761

 Score =  339 bits (171), Expect = 6e-90
 Identities = 440/529 (83%), Gaps = 3/529 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    atcgatgcgtgcaacagctatcttattacaagatatgacggaacaataatcaatgcgaag 60
            ||||| |||||||||| |||||| || ||||| ||||| |||||||||||  |||| || 
Sbjct: 777  atcgacgcgtgcaacaactatctgatcacaaggtatgatggaacaataattgatgccaaa 836

                                                                        
Query: 61   ccatggcacttaggtggtgaaacaagagaagtatgggatggttcagatccagtggattac 120
            |||||||| ||||||||||| |  |||||| |||||||||| ||||||   |||||||||
Sbjct: 837  ccatggcaattaggtggtgatagcagagaaatatgggatggctcagatttggtggattac 896

                                                                        
Query: 121  agtacaacgccacccaaaagcccagagagcaactctgaccgggcatggaggatgcttaac 180
            | | ||  |||| ||||||||| |||||||||||||||  |||||||||||||||| | |
Sbjct: 897  aatgcagtgccatccaaaagccaagagagcaactctgatagggcatggaggatgctcagc 956

                                                                        
Query: 181  aagcccctgcagaagagtggcagtgaaaactttggtgatgtgcttgaacggcgaaatcca 240
            ||||| ||| ||||| ||  || |||||| ||||| || ||||||||||| ||||| |||
Sbjct: 957  aagcctctgaagaagggtcacactgaaaattttggggaagtgcttgaacgacgaaaccca 1016

                                                                        
Query: 241  ctggcttttggtcatttcgcgaaccacccaccgggagggtcgacccctaacgtcatgatc 300
            || ||||||||||| || || ||||| |||||   |||||| || || || |||||||||
Sbjct: 1017 ctcgcttttggtcactttgcaaaccatccaccaaaagggtcaactcccaatgtcatgatc 1076

                                                                        
Query: 301  tgcccatatgatttcccattgacagagaaggacatcagagcatacatcccgaacattgct 360
            |||||||||||||| |||||||||||||||||||| ||||  |||||||| |||||| ||
Sbjct: 1077 tgcccatatgattttccattgacagagaaggacatgagagtctacatccctaacattact 1136

                                                                        
Query: 361  tttggtggt---gaagagcccgttacaatgaagaggtttggctccttctggttcaagtcc 417
            |||||||||   ||||||||||||||||||||  | ||||| || |||||||||||||| 
Sbjct: 1137 tttggtggtgaagaagagcccgttacaatgaaacgatttggttcattctggttcaagtct 1196

                                                                        
Query: 418  agaacccctggtaaaccgactggggagtcaccggttctgaggacgcttgtgctagtgagt 477
             ||    ||||||| | |   |||||||| || ||||||| ||| || ||||| ||||||
Sbjct: 1197 ggacgttctggtaatcaggaaggggagtctccagttctgaagactctagtgctggtgagt 1256

                                                             
Query: 478  acgaggtccgtatgtgacgaagaactctacctgaactacaggtacagca 526
            || |||||| ||||||| ||||| |||| |||||||||| |||||||||
Sbjct: 1257 acaaggtccatatgtgatgaagagctcttcctgaactaccggtacagca 1305



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  339 bits (171), Expect = 6e-90
 Identities = 440/529 (83%), Gaps = 3/529 (0%)
 Strand = Plus / Plus

                                                                            
Query: 1        atcgatgcgtgcaacagctatcttattacaagatatgacggaacaataatcaatgcgaag 60
                ||||| |||||||||| |||||| || ||||| ||||| |||||||||||  |||| || 
Sbjct: 25455701 atcgacgcgtgcaacaactatctgatcacaaggtatgatggaacaataattgatgccaaa 25455760

                                                                            
Query: 61       ccatggcacttaggtggtgaaacaagagaagtatgggatggttcagatccagtggattac 120
                |||||||| ||||||||||| |  |||||| |||||||||| ||||||   |||||||||
Sbjct: 25455761 ccatggcaattaggtggtgatagcagagaaatatgggatggctcagatttggtggattac 25455820

                                                                            
Query: 121      agtacaacgccacccaaaagcccagagagcaactctgaccgggcatggaggatgcttaac 180
                | | ||  |||| ||||||||| |||||||||||||||  |||||||||||||||| | |
Sbjct: 25455821 aatgcagtgccatccaaaagccaagagagcaactctgatagggcatggaggatgctcagc 25455880

                                                                            
Query: 181      aagcccctgcagaagagtggcagtgaaaactttggtgatgtgcttgaacggcgaaatcca 240
                ||||| ||| ||||| ||  || |||||| ||||| || ||||||||||| ||||| |||
Sbjct: 25455881 aagcctctgaagaagggtcacactgaaaattttggggaagtgcttgaacgacgaaaccca 25455940

                                                                            
Query: 241      ctggcttttggtcatttcgcgaaccacccaccgggagggtcgacccctaacgtcatgatc 300
                || ||||||||||| || || ||||| |||||   |||||| || || || |||||||||
Sbjct: 25455941 ctcgcttttggtcactttgcaaaccatccaccaaaagggtcaactcccaatgtcatgatc 25456000

                                                                            
Query: 301      tgcccatatgatttcccattgacagagaaggacatcagagcatacatcccgaacattgct 360
                |||||||||||||| |||||||||||||||||||| ||||  |||||||| |||||| ||
Sbjct: 25456001 tgcccatatgattttccattgacagagaaggacatgagagtctacatccctaacattact 25456060

                                                                            
Query: 361      tttggtggt---gaagagcccgttacaatgaagaggtttggctccttctggttcaagtcc 417
                |||||||||   ||||||||||||||||||||  | ||||| || |||||||||||||| 
Sbjct: 25456061 tttggtggtgaagaagagcccgttacaatgaaacgatttggttcattctggttcaagtct 25456120

                                                                            
Query: 418      agaacccctggtaaaccgactggggagtcaccggttctgaggacgcttgtgctagtgagt 477
                 ||    ||||||| | |   |||||||| || ||||||| ||| || ||||| ||||||
Sbjct: 25456121 ggacgttctggtaatcaggaaggggagtctccagttctgaagactctagtgctggtgagt 25456180

                                                                 
Query: 478      acgaggtccgtatgtgacgaagaactctacctgaactacaggtacagca 526
                || |||||| ||||||| ||||| |||| |||||||||| |||||||||
Sbjct: 25456181 acaaggtccatatgtgatgaagagctcttcctgaactaccggtacagca 25456229



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>dbj|AP004192.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1643_A10
          Length = 130037

 Score =  339 bits (171), Expect = 6e-90
 Identities = 440/529 (83%), Gaps = 3/529 (0%)
 Strand = Plus / Plus

                                                                          
Query: 1      atcgatgcgtgcaacagctatcttattacaagatatgacggaacaataatcaatgcgaag 60
              ||||| |||||||||| |||||| || ||||| ||||| |||||||||||  |||| || 
Sbjct: 111363 atcgacgcgtgcaacaactatctgatcacaaggtatgatggaacaataattgatgccaaa 111422

                                                                          
Query: 61     ccatggcacttaggtggtgaaacaagagaagtatgggatggttcagatccagtggattac 120
              |||||||| ||||||||||| |  |||||| |||||||||| ||||||   |||||||||
Sbjct: 111423 ccatggcaattaggtggtgatagcagagaaatatgggatggctcagatttggtggattac 111482

                                                                          
Query: 121    agtacaacgccacccaaaagcccagagagcaactctgaccgggcatggaggatgcttaac 180
              | | ||  |||| ||||||||| |||||||||||||||  |||||||||||||||| | |
Sbjct: 111483 aatgcagtgccatccaaaagccaagagagcaactctgatagggcatggaggatgctcagc 111542

                                                                          
Query: 181    aagcccctgcagaagagtggcagtgaaaactttggtgatgtgcttgaacggcgaaatcca 240
              ||||| ||| ||||| ||  || |||||| ||||| || ||||||||||| ||||| |||
Sbjct: 111543 aagcctctgaagaagggtcacactgaaaattttggggaagtgcttgaacgacgaaaccca 111602

                                                                          
Query: 241    ctggcttttggtcatttcgcgaaccacccaccgggagggtcgacccctaacgtcatgatc 300
              || ||||||||||| || || ||||| |||||   |||||| || || || |||||||||
Sbjct: 111603 ctcgcttttggtcactttgcaaaccatccaccaaaagggtcaactcccaatgtcatgatc 111662

                                                                          
Query: 301    tgcccatatgatttcccattgacagagaaggacatcagagcatacatcccgaacattgct 360
              |||||||||||||| |||||||||||||||||||| ||||  |||||||| |||||| ||
Sbjct: 111663 tgcccatatgattttccattgacagagaaggacatgagagtctacatccctaacattact 111722

                                                                          
Query: 361    tttggtggt---gaagagcccgttacaatgaagaggtttggctccttctggttcaagtcc 417
              |||||||||   ||||||||||||||||||||  | ||||| || |||||||||||||| 
Sbjct: 111723 tttggtggtgaagaagagcccgttacaatgaaacgatttggttcattctggttcaagtct 111782

                                                                          
Query: 418    agaacccctggtaaaccgactggggagtcaccggttctgaggacgcttgtgctagtgagt 477
               ||    ||||||| | |   |||||||| || ||||||| ||| || ||||| ||||||
Sbjct: 111783 ggacgttctggtaatcaggaaggggagtctccagttctgaagactctagtgctggtgagt 111842

                                                               
Query: 478    acgaggtccgtatgtgacgaagaactctacctgaactacaggtacagca 526
              || |||||| ||||||| ||||| |||| |||||||||| |||||||||
Sbjct: 111843 acaaggtccatatgtgatgaagagctcttcctgaactaccggtacagca 111891



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>dbj|AP004069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
           BAC clone:OJ1626_B09
          Length = 58749

 Score =  339 bits (171), Expect = 6e-90
 Identities = 440/529 (83%), Gaps = 3/529 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcgatgcgtgcaacagctatcttattacaagatatgacggaacaataatcaatgcgaag 60
           ||||| |||||||||| |||||| || ||||| ||||| |||||||||||  |||| || 
Sbjct: 251 atcgacgcgtgcaacaactatctgatcacaaggtatgatggaacaataattgatgccaaa 310

                                                                       
Query: 61  ccatggcacttaggtggtgaaacaagagaagtatgggatggttcagatccagtggattac 120
           |||||||| ||||||||||| |  |||||| |||||||||| ||||||   |||||||||
Sbjct: 311 ccatggcaattaggtggtgatagcagagaaatatgggatggctcagatttggtggattac 370

                                                                       
Query: 121 agtacaacgccacccaaaagcccagagagcaactctgaccgggcatggaggatgcttaac 180
           | | ||  |||| ||||||||| |||||||||||||||  |||||||||||||||| | |
Sbjct: 371 aatgcagtgccatccaaaagccaagagagcaactctgatagggcatggaggatgctcagc 430

                                                                       
Query: 181 aagcccctgcagaagagtggcagtgaaaactttggtgatgtgcttgaacggcgaaatcca 240
           ||||| ||| ||||| ||  || |||||| ||||| || ||||||||||| ||||| |||
Sbjct: 431 aagcctctgaagaagggtcacactgaaaattttggggaagtgcttgaacgacgaaaccca 490

                                                                       
Query: 241 ctggcttttggtcatttcgcgaaccacccaccgggagggtcgacccctaacgtcatgatc 300
           || ||||||||||| || || ||||| |||||   |||||| || || || |||||||||
Sbjct: 491 ctcgcttttggtcactttgcaaaccatccaccaaaagggtcaactcccaatgtcatgatc 550

                                                                       
Query: 301 tgcccatatgatttcccattgacagagaaggacatcagagcatacatcccgaacattgct 360
           |||||||||||||| |||||||||||||||||||| ||||  |||||||| |||||| ||
Sbjct: 551 tgcccatatgattttccattgacagagaaggacatgagagtctacatccctaacattact 610

                                                                       
Query: 361 tttggtggt---gaagagcccgttacaatgaagaggtttggctccttctggttcaagtcc 417
           |||||||||   ||||||||||||||||||||  | ||||| || |||||||||||||| 
Sbjct: 611 tttggtggtgaagaagagcccgttacaatgaaacgatttggttcattctggttcaagtct 670

                                                                       
Query: 418 agaacccctggtaaaccgactggggagtcaccggttctgaggacgcttgtgctagtgagt 477
            ||    ||||||| | |   |||||||| || ||||||| ||| || ||||| ||||||
Sbjct: 671 ggacgttctggtaatcaggaaggggagtctccagttctgaagactctagtgctggtgagt 730

                                                            
Query: 478 acgaggtccgtatgtgacgaagaactctacctgaactacaggtacagca 526
           || |||||| ||||||| ||||| |||| |||||||||| |||||||||
Sbjct: 731 acaaggtccatatgtgatgaagagctcttcctgaactaccggtacagca 779



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>dbj|AK101737.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061I23, full
            insert sequence
          Length = 1760

 Score =  339 bits (171), Expect = 6e-90
 Identities = 440/529 (83%), Gaps = 3/529 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    atcgatgcgtgcaacagctatcttattacaagatatgacggaacaataatcaatgcgaag 60
            ||||| |||||||||| |||||| || ||||| ||||| |||||||||||  |||| || 
Sbjct: 776  atcgacgcgtgcaacaactatctgatcacaaggtatgatggaacaataattgatgccaaa 835

                                                                        
Query: 61   ccatggcacttaggtggtgaaacaagagaagtatgggatggttcagatccagtggattac 120
            |||||||| ||||||||||| |  |||||| |||||||||| ||||||   |||||||||
Sbjct: 836  ccatggcaattaggtggtgatagcagagaaatatgggatggctcagatttggtggattac 895

                                                                        
Query: 121  agtacaacgccacccaaaagcccagagagcaactctgaccgggcatggaggatgcttaac 180
            | | ||  |||| ||||||||| |||||||||||||||  |||||||||||||||| | |
Sbjct: 896  aatgcagtgccatccaaaagccaagagagcaactctgatagggcatggaggatgctcagc 955

                                                                        
Query: 181  aagcccctgcagaagagtggcagtgaaaactttggtgatgtgcttgaacggcgaaatcca 240
            ||||| ||| ||||| ||  || |||||| ||||| || ||||||||||| ||||| |||
Sbjct: 956  aagcctctgaagaagggtcacactgaaaattttggggaagtgcttgaacgacgaaaccca 1015

                                                                        
Query: 241  ctggcttttggtcatttcgcgaaccacccaccgggagggtcgacccctaacgtcatgatc 300
            || ||||||||||| || || ||||| |||||   |||||| || || || |||||||||
Sbjct: 1016 ctcgcttttggtcactttgcaaaccatccaccaaaagggtcaactcccaatgtcatgatc 1075

                                                                        
Query: 301  tgcccatatgatttcccattgacagagaaggacatcagagcatacatcccgaacattgct 360
            |||||||||||||| |||||||||||||||||||| ||||  |||||||| |||||| ||
Sbjct: 1076 tgcccatatgattttccattgacagagaaggacatgagagtctacatccctaacattact 1135

                                                                        
Query: 361  tttggtggt---gaagagcccgttacaatgaagaggtttggctccttctggttcaagtcc 417
            |||||||||   ||||||||||||||||||||  | ||||| || |||||||||||||| 
Sbjct: 1136 tttggtggtgaagaagagcccgttacaatgaaacgatttggttcattctggttcaagtct 1195

                                                                        
Query: 418  agaacccctggtaaaccgactggggagtcaccggttctgaggacgcttgtgctagtgagt 477
             ||    ||||||| | |   |||||||| || ||||||| ||| || ||||| ||||||
Sbjct: 1196 ggacgttctggtaatcaggaaggggagtctccagttctgaagactctagtgctggtgagt 1255

                                                             
Query: 478  acgaggtccgtatgtgacgaagaactctacctgaactacaggtacagca 526
            || |||||| ||||||| ||||| |||| |||||||||| |||||||||
Sbjct: 1256 acaaggtccatatgtgatgaagagctcttcctgaactaccggtacagca 1304



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>dbj|AK106596.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-112-A06, full
           insert sequence
          Length = 2071

 Score =  236 bits (119), Expect = 6e-59
 Identities = 307/369 (83%), Gaps = 3/369 (0%)
 Strand = Plus / Plus

                                                                       
Query: 161 gggcatggaggatgcttaacaagcccctgcagaagagtggcagtgaaaactttggtgatg 220
           |||||||||||||||| | |||||| ||| ||||| ||  || |||||| ||||| || |
Sbjct: 3   gggcatggaggatgctcagcaagcctctgaagaagggtcacactgaaaattttggggaag 62

                                                                       
Query: 221 tgcttgaacggcgaaatccactggcttttggtcatttcgcgaaccacccaccgggagggt 280
           |||||||||| ||||| ||||| ||||||||||| || || ||||| |||||   |||||
Sbjct: 63  tgcttgaacgacgaaacccactcgcttttggtcactttgcaaaccatccaccaaaagggt 122

                                                                       
Query: 281 cgacccctaacgtcatgatctgcccatatgatttcccattgacagagaaggacatcagag 340
           | || || || ||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 123 caactcccaatgtcatgatctgcccatatgattttccattgacagagaaggacatgagag 182

                                                                       
Query: 341 catacatcccgaacattgcttttggtggt---gaagagcccgttacaatgaagaggtttg 397
             |||||||| |||||| |||||||||||   ||||||||||||||||||||  | ||||
Sbjct: 183 tctacatccctaacattacttttggtggtgaagaagagcccgttacaatgaaacgatttg 242

                                                                       
Query: 398 gctccttctggttcaagtccagaacccctggtaaaccgactggggagtcaccggttctga 457
           | || ||||||||||||||  ||    ||||||| | |   |||||||| || |||||||
Sbjct: 243 gttcattctggttcaagtctggacgttctggtaatcaggaaggggagtctccagttctga 302

                                                                       
Query: 458 ggacgcttgtgctagtgagtacgaggtccgtatgtgacgaagaactctacctgaactaca 517
            ||| || ||||| |||||||| |||||| ||||||| ||||| |||| |||||||||| 
Sbjct: 303 agactctagtgctggtgagtacaaggtccatatgtgatgaagagctcttcctgaactacc 362

                    
Query: 518 ggtacagca 526
           |||||||||
Sbjct: 363 ggtacagca 371



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>gb|AC118932.7| Mus musculus chromosome 5, clone RP24-147H20, complete sequence
          Length = 168156

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 499    gaactctacctgaactacaggt 520
              ||||||||||||||||||||||
Sbjct: 104807 gaactctacctgaactacaggt 104786



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>gb|AC157928.4| Mus musculus chromosome 5, clone RP24-119I9, complete sequence
          Length = 157594

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 499  gaactctacctgaactacaggt 520
            ||||||||||||||||||||||
Sbjct: 3614 gaactctacctgaactacaggt 3593



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>dbj|AK032760.1| Mus musculus 12 days embryo male wolffian duct includes surrounding
           region cDNA, RIKEN full-length enriched library,
           clone:6720430F13 product:unclassifiable, full insert
           sequence
          Length = 3075

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 499 gaactctacctgaactacaggt 520
           ||||||||||||||||||||||
Sbjct: 340 gaactctacctgaactacaggt 319



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>dbj|AB063124.1| Coturnix japonica DNA, microsatellite locus GUJ0056
          Length = 183

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 175 cttaacaagcccctgcagaag 195
           |||||||||||||||||||||
Sbjct: 112 cttaacaagcccctgcagaag 132



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>gb|AC168049.2| Mus musculus BAC clone RP23-246L6 from chromosome 10, complete sequence
          Length = 229657

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 320    tgacagagaaggacatcaga 339
              ||||||||||||||||||||
Sbjct: 113452 tgacagagaaggacatcaga 113433



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>gb|AC125110.4| Mus musculus BAC clone RP24-235E14 from chromosome 18, complete sequence
          Length = 187634

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 139    agcccagagagcaactctga 158
              ||||||||||||||||||||
Sbjct: 157411 agcccagagagcaactctga 157392



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>gb|AC067964.18| Mus Musculus Strain C57BL6/J Chromosome 5 RP23-337K7, complete sequence
          Length = 219769

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 317    cattgacagagaaggacatcagag 340
              |||||||||||||||| |||||||
Sbjct: 104070 cattgacagagaaggaaatcagag 104093



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>gb|AC077689.9| Mus Musculus Strain C57BL6/J Chromosome 5 RP23-301H20, complete sequence
          Length = 213462

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 317    cattgacagagaaggacatcagag 340
              |||||||||||||||| |||||||
Sbjct: 208631 cattgacagagaaggaaatcagag 208654



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>gb|AF067845.1|AF067845 Homo sapiens clone P1-4248, complete sequence
          Length = 108932

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   ccctgcagaagagtggcagt 204
             ||||||||||||||||||||
Sbjct: 17747 ccctgcagaagagtggcagt 17766



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>gb|AC162939.6| Mus musculus BAC clone RP23-97G12 from chromosome 10, complete sequence
          Length = 247228

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 320   tgacagagaaggacatcaga 339
             ||||||||||||||||||||
Sbjct: 26124 tgacagagaaggacatcaga 26105



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>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome
          Length = 2905187

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 347    tcccgaacattgcttttggt 366
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Sbjct: 548125 tcccgaacattgcttttggt 548144



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>gb|AC110288.10| Homo sapiens chromosome 8, clone CTD-2281E23, complete sequence
          Length = 102752

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   ccctgcagaagagtggcagt 204
             ||||||||||||||||||||
Sbjct: 94410 ccctgcagaagagtggcagt 94429


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,018,872
Number of Sequences: 3902068
Number of extensions: 4018872
Number of successful extensions: 97369
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97296
Number of HSP's gapped (non-prelim): 67
length of query: 540
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 517
effective length of database: 17,143,297,704
effective search space: 8863084912968
effective search space used: 8863084912968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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