| Clone Name | basd13p03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_466918.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1761 Score = 339 bits (171), Expect = 6e-90 Identities = 440/529 (83%), Gaps = 3/529 (0%) Strand = Plus / Plus Query: 1 atcgatgcgtgcaacagctatcttattacaagatatgacggaacaataatcaatgcgaag 60 ||||| |||||||||| |||||| || ||||| ||||| ||||||||||| |||| || Sbjct: 777 atcgacgcgtgcaacaactatctgatcacaaggtatgatggaacaataattgatgccaaa 836 Query: 61 ccatggcacttaggtggtgaaacaagagaagtatgggatggttcagatccagtggattac 120 |||||||| ||||||||||| | |||||| |||||||||| |||||| ||||||||| Sbjct: 837 ccatggcaattaggtggtgatagcagagaaatatgggatggctcagatttggtggattac 896 Query: 121 agtacaacgccacccaaaagcccagagagcaactctgaccgggcatggaggatgcttaac 180 | | || |||| ||||||||| ||||||||||||||| |||||||||||||||| | | Sbjct: 897 aatgcagtgccatccaaaagccaagagagcaactctgatagggcatggaggatgctcagc 956 Query: 181 aagcccctgcagaagagtggcagtgaaaactttggtgatgtgcttgaacggcgaaatcca 240 ||||| ||| ||||| || || |||||| ||||| || ||||||||||| ||||| ||| Sbjct: 957 aagcctctgaagaagggtcacactgaaaattttggggaagtgcttgaacgacgaaaccca 1016 Query: 241 ctggcttttggtcatttcgcgaaccacccaccgggagggtcgacccctaacgtcatgatc 300 || ||||||||||| || || ||||| ||||| |||||| || || || ||||||||| Sbjct: 1017 ctcgcttttggtcactttgcaaaccatccaccaaaagggtcaactcccaatgtcatgatc 1076 Query: 301 tgcccatatgatttcccattgacagagaaggacatcagagcatacatcccgaacattgct 360 |||||||||||||| |||||||||||||||||||| |||| |||||||| |||||| || Sbjct: 1077 tgcccatatgattttccattgacagagaaggacatgagagtctacatccctaacattact 1136 Query: 361 tttggtggt---gaagagcccgttacaatgaagaggtttggctccttctggttcaagtcc 417 ||||||||| |||||||||||||||||||| | ||||| || |||||||||||||| Sbjct: 1137 tttggtggtgaagaagagcccgttacaatgaaacgatttggttcattctggttcaagtct 1196 Query: 418 agaacccctggtaaaccgactggggagtcaccggttctgaggacgcttgtgctagtgagt 477 || ||||||| | | |||||||| || ||||||| ||| || ||||| |||||| Sbjct: 1197 ggacgttctggtaatcaggaaggggagtctccagttctgaagactctagtgctggtgagt 1256 Query: 478 acgaggtccgtatgtgacgaagaactctacctgaactacaggtacagca 526 || |||||| ||||||| ||||| |||| |||||||||| ||||||||| Sbjct: 1257 acaaggtccatatgtgatgaagagctcttcctgaactaccggtacagca 1305
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 339 bits (171), Expect = 6e-90 Identities = 440/529 (83%), Gaps = 3/529 (0%) Strand = Plus / Plus Query: 1 atcgatgcgtgcaacagctatcttattacaagatatgacggaacaataatcaatgcgaag 60 ||||| |||||||||| |||||| || ||||| ||||| ||||||||||| |||| || Sbjct: 25455701 atcgacgcgtgcaacaactatctgatcacaaggtatgatggaacaataattgatgccaaa 25455760 Query: 61 ccatggcacttaggtggtgaaacaagagaagtatgggatggttcagatccagtggattac 120 |||||||| ||||||||||| | |||||| |||||||||| |||||| ||||||||| Sbjct: 25455761 ccatggcaattaggtggtgatagcagagaaatatgggatggctcagatttggtggattac 25455820 Query: 121 agtacaacgccacccaaaagcccagagagcaactctgaccgggcatggaggatgcttaac 180 | | || |||| ||||||||| ||||||||||||||| |||||||||||||||| | | Sbjct: 25455821 aatgcagtgccatccaaaagccaagagagcaactctgatagggcatggaggatgctcagc 25455880 Query: 181 aagcccctgcagaagagtggcagtgaaaactttggtgatgtgcttgaacggcgaaatcca 240 ||||| ||| ||||| || || |||||| ||||| || ||||||||||| ||||| ||| Sbjct: 25455881 aagcctctgaagaagggtcacactgaaaattttggggaagtgcttgaacgacgaaaccca 25455940 Query: 241 ctggcttttggtcatttcgcgaaccacccaccgggagggtcgacccctaacgtcatgatc 300 || ||||||||||| || || ||||| ||||| |||||| || || || ||||||||| Sbjct: 25455941 ctcgcttttggtcactttgcaaaccatccaccaaaagggtcaactcccaatgtcatgatc 25456000 Query: 301 tgcccatatgatttcccattgacagagaaggacatcagagcatacatcccgaacattgct 360 |||||||||||||| |||||||||||||||||||| |||| |||||||| |||||| || Sbjct: 25456001 tgcccatatgattttccattgacagagaaggacatgagagtctacatccctaacattact 25456060 Query: 361 tttggtggt---gaagagcccgttacaatgaagaggtttggctccttctggttcaagtcc 417 ||||||||| |||||||||||||||||||| | ||||| || |||||||||||||| Sbjct: 25456061 tttggtggtgaagaagagcccgttacaatgaaacgatttggttcattctggttcaagtct 25456120 Query: 418 agaacccctggtaaaccgactggggagtcaccggttctgaggacgcttgtgctagtgagt 477 || ||||||| | | |||||||| || ||||||| ||| || ||||| |||||| Sbjct: 25456121 ggacgttctggtaatcaggaaggggagtctccagttctgaagactctagtgctggtgagt 25456180 Query: 478 acgaggtccgtatgtgacgaagaactctacctgaactacaggtacagca 526 || |||||| ||||||| ||||| |||| |||||||||| ||||||||| Sbjct: 25456181 acaaggtccatatgtgatgaagagctcttcctgaactaccggtacagca 25456229
>dbj|AP004192.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1643_A10 Length = 130037 Score = 339 bits (171), Expect = 6e-90 Identities = 440/529 (83%), Gaps = 3/529 (0%) Strand = Plus / Plus Query: 1 atcgatgcgtgcaacagctatcttattacaagatatgacggaacaataatcaatgcgaag 60 ||||| |||||||||| |||||| || ||||| ||||| ||||||||||| |||| || Sbjct: 111363 atcgacgcgtgcaacaactatctgatcacaaggtatgatggaacaataattgatgccaaa 111422 Query: 61 ccatggcacttaggtggtgaaacaagagaagtatgggatggttcagatccagtggattac 120 |||||||| ||||||||||| | |||||| |||||||||| |||||| ||||||||| Sbjct: 111423 ccatggcaattaggtggtgatagcagagaaatatgggatggctcagatttggtggattac 111482 Query: 121 agtacaacgccacccaaaagcccagagagcaactctgaccgggcatggaggatgcttaac 180 | | || |||| ||||||||| ||||||||||||||| |||||||||||||||| | | Sbjct: 111483 aatgcagtgccatccaaaagccaagagagcaactctgatagggcatggaggatgctcagc 111542 Query: 181 aagcccctgcagaagagtggcagtgaaaactttggtgatgtgcttgaacggcgaaatcca 240 ||||| ||| ||||| || || |||||| ||||| || ||||||||||| ||||| ||| Sbjct: 111543 aagcctctgaagaagggtcacactgaaaattttggggaagtgcttgaacgacgaaaccca 111602 Query: 241 ctggcttttggtcatttcgcgaaccacccaccgggagggtcgacccctaacgtcatgatc 300 || ||||||||||| || || ||||| ||||| |||||| || || || ||||||||| Sbjct: 111603 ctcgcttttggtcactttgcaaaccatccaccaaaagggtcaactcccaatgtcatgatc 111662 Query: 301 tgcccatatgatttcccattgacagagaaggacatcagagcatacatcccgaacattgct 360 |||||||||||||| |||||||||||||||||||| |||| |||||||| |||||| || Sbjct: 111663 tgcccatatgattttccattgacagagaaggacatgagagtctacatccctaacattact 111722 Query: 361 tttggtggt---gaagagcccgttacaatgaagaggtttggctccttctggttcaagtcc 417 ||||||||| |||||||||||||||||||| | ||||| || |||||||||||||| Sbjct: 111723 tttggtggtgaagaagagcccgttacaatgaaacgatttggttcattctggttcaagtct 111782 Query: 418 agaacccctggtaaaccgactggggagtcaccggttctgaggacgcttgtgctagtgagt 477 || ||||||| | | |||||||| || ||||||| ||| || ||||| |||||| Sbjct: 111783 ggacgttctggtaatcaggaaggggagtctccagttctgaagactctagtgctggtgagt 111842 Query: 478 acgaggtccgtatgtgacgaagaactctacctgaactacaggtacagca 526 || |||||| ||||||| ||||| |||| |||||||||| ||||||||| Sbjct: 111843 acaaggtccatatgtgatgaagagctcttcctgaactaccggtacagca 111891
>dbj|AP004069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1626_B09 Length = 58749 Score = 339 bits (171), Expect = 6e-90 Identities = 440/529 (83%), Gaps = 3/529 (0%) Strand = Plus / Plus Query: 1 atcgatgcgtgcaacagctatcttattacaagatatgacggaacaataatcaatgcgaag 60 ||||| |||||||||| |||||| || ||||| ||||| ||||||||||| |||| || Sbjct: 251 atcgacgcgtgcaacaactatctgatcacaaggtatgatggaacaataattgatgccaaa 310 Query: 61 ccatggcacttaggtggtgaaacaagagaagtatgggatggttcagatccagtggattac 120 |||||||| ||||||||||| | |||||| |||||||||| |||||| ||||||||| Sbjct: 311 ccatggcaattaggtggtgatagcagagaaatatgggatggctcagatttggtggattac 370 Query: 121 agtacaacgccacccaaaagcccagagagcaactctgaccgggcatggaggatgcttaac 180 | | || |||| ||||||||| ||||||||||||||| |||||||||||||||| | | Sbjct: 371 aatgcagtgccatccaaaagccaagagagcaactctgatagggcatggaggatgctcagc 430 Query: 181 aagcccctgcagaagagtggcagtgaaaactttggtgatgtgcttgaacggcgaaatcca 240 ||||| ||| ||||| || || |||||| ||||| || ||||||||||| ||||| ||| Sbjct: 431 aagcctctgaagaagggtcacactgaaaattttggggaagtgcttgaacgacgaaaccca 490 Query: 241 ctggcttttggtcatttcgcgaaccacccaccgggagggtcgacccctaacgtcatgatc 300 || ||||||||||| || || ||||| ||||| |||||| || || || ||||||||| Sbjct: 491 ctcgcttttggtcactttgcaaaccatccaccaaaagggtcaactcccaatgtcatgatc 550 Query: 301 tgcccatatgatttcccattgacagagaaggacatcagagcatacatcccgaacattgct 360 |||||||||||||| |||||||||||||||||||| |||| |||||||| |||||| || Sbjct: 551 tgcccatatgattttccattgacagagaaggacatgagagtctacatccctaacattact 610 Query: 361 tttggtggt---gaagagcccgttacaatgaagaggtttggctccttctggttcaagtcc 417 ||||||||| |||||||||||||||||||| | ||||| || |||||||||||||| Sbjct: 611 tttggtggtgaagaagagcccgttacaatgaaacgatttggttcattctggttcaagtct 670 Query: 418 agaacccctggtaaaccgactggggagtcaccggttctgaggacgcttgtgctagtgagt 477 || ||||||| | | |||||||| || ||||||| ||| || ||||| |||||| Sbjct: 671 ggacgttctggtaatcaggaaggggagtctccagttctgaagactctagtgctggtgagt 730 Query: 478 acgaggtccgtatgtgacgaagaactctacctgaactacaggtacagca 526 || |||||| ||||||| ||||| |||| |||||||||| ||||||||| Sbjct: 731 acaaggtccatatgtgatgaagagctcttcctgaactaccggtacagca 779
>dbj|AK101737.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061I23, full insert sequence Length = 1760 Score = 339 bits (171), Expect = 6e-90 Identities = 440/529 (83%), Gaps = 3/529 (0%) Strand = Plus / Plus Query: 1 atcgatgcgtgcaacagctatcttattacaagatatgacggaacaataatcaatgcgaag 60 ||||| |||||||||| |||||| || ||||| ||||| ||||||||||| |||| || Sbjct: 776 atcgacgcgtgcaacaactatctgatcacaaggtatgatggaacaataattgatgccaaa 835 Query: 61 ccatggcacttaggtggtgaaacaagagaagtatgggatggttcagatccagtggattac 120 |||||||| ||||||||||| | |||||| |||||||||| |||||| ||||||||| Sbjct: 836 ccatggcaattaggtggtgatagcagagaaatatgggatggctcagatttggtggattac 895 Query: 121 agtacaacgccacccaaaagcccagagagcaactctgaccgggcatggaggatgcttaac 180 | | || |||| ||||||||| ||||||||||||||| |||||||||||||||| | | Sbjct: 896 aatgcagtgccatccaaaagccaagagagcaactctgatagggcatggaggatgctcagc 955 Query: 181 aagcccctgcagaagagtggcagtgaaaactttggtgatgtgcttgaacggcgaaatcca 240 ||||| ||| ||||| || || |||||| ||||| || ||||||||||| ||||| ||| Sbjct: 956 aagcctctgaagaagggtcacactgaaaattttggggaagtgcttgaacgacgaaaccca 1015 Query: 241 ctggcttttggtcatttcgcgaaccacccaccgggagggtcgacccctaacgtcatgatc 300 || ||||||||||| || || ||||| ||||| |||||| || || || ||||||||| Sbjct: 1016 ctcgcttttggtcactttgcaaaccatccaccaaaagggtcaactcccaatgtcatgatc 1075 Query: 301 tgcccatatgatttcccattgacagagaaggacatcagagcatacatcccgaacattgct 360 |||||||||||||| |||||||||||||||||||| |||| |||||||| |||||| || Sbjct: 1076 tgcccatatgattttccattgacagagaaggacatgagagtctacatccctaacattact 1135 Query: 361 tttggtggt---gaagagcccgttacaatgaagaggtttggctccttctggttcaagtcc 417 ||||||||| |||||||||||||||||||| | ||||| || |||||||||||||| Sbjct: 1136 tttggtggtgaagaagagcccgttacaatgaaacgatttggttcattctggttcaagtct 1195 Query: 418 agaacccctggtaaaccgactggggagtcaccggttctgaggacgcttgtgctagtgagt 477 || ||||||| | | |||||||| || ||||||| ||| || ||||| |||||| Sbjct: 1196 ggacgttctggtaatcaggaaggggagtctccagttctgaagactctagtgctggtgagt 1255 Query: 478 acgaggtccgtatgtgacgaagaactctacctgaactacaggtacagca 526 || |||||| ||||||| ||||| |||| |||||||||| ||||||||| Sbjct: 1256 acaaggtccatatgtgatgaagagctcttcctgaactaccggtacagca 1304
>dbj|AK106596.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-112-A06, full insert sequence Length = 2071 Score = 236 bits (119), Expect = 6e-59 Identities = 307/369 (83%), Gaps = 3/369 (0%) Strand = Plus / Plus Query: 161 gggcatggaggatgcttaacaagcccctgcagaagagtggcagtgaaaactttggtgatg 220 |||||||||||||||| | |||||| ||| ||||| || || |||||| ||||| || | Sbjct: 3 gggcatggaggatgctcagcaagcctctgaagaagggtcacactgaaaattttggggaag 62 Query: 221 tgcttgaacggcgaaatccactggcttttggtcatttcgcgaaccacccaccgggagggt 280 |||||||||| ||||| ||||| ||||||||||| || || ||||| ||||| ||||| Sbjct: 63 tgcttgaacgacgaaacccactcgcttttggtcactttgcaaaccatccaccaaaagggt 122 Query: 281 cgacccctaacgtcatgatctgcccatatgatttcccattgacagagaaggacatcagag 340 | || || || ||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct: 123 caactcccaatgtcatgatctgcccatatgattttccattgacagagaaggacatgagag 182 Query: 341 catacatcccgaacattgcttttggtggt---gaagagcccgttacaatgaagaggtttg 397 |||||||| |||||| ||||||||||| |||||||||||||||||||| | |||| Sbjct: 183 tctacatccctaacattacttttggtggtgaagaagagcccgttacaatgaaacgatttg 242 Query: 398 gctccttctggttcaagtccagaacccctggtaaaccgactggggagtcaccggttctga 457 | || |||||||||||||| || ||||||| | | |||||||| || ||||||| Sbjct: 243 gttcattctggttcaagtctggacgttctggtaatcaggaaggggagtctccagttctga 302 Query: 458 ggacgcttgtgctagtgagtacgaggtccgtatgtgacgaagaactctacctgaactaca 517 ||| || ||||| |||||||| |||||| ||||||| ||||| |||| |||||||||| Sbjct: 303 agactctagtgctggtgagtacaaggtccatatgtgatgaagagctcttcctgaactacc 362 Query: 518 ggtacagca 526 ||||||||| Sbjct: 363 ggtacagca 371
>gb|AC118932.7| Mus musculus chromosome 5, clone RP24-147H20, complete sequence Length = 168156 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 499 gaactctacctgaactacaggt 520 |||||||||||||||||||||| Sbjct: 104807 gaactctacctgaactacaggt 104786
>gb|AC157928.4| Mus musculus chromosome 5, clone RP24-119I9, complete sequence Length = 157594 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 499 gaactctacctgaactacaggt 520 |||||||||||||||||||||| Sbjct: 3614 gaactctacctgaactacaggt 3593
>dbj|AK032760.1| Mus musculus 12 days embryo male wolffian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6720430F13 product:unclassifiable, full insert sequence Length = 3075 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 499 gaactctacctgaactacaggt 520 |||||||||||||||||||||| Sbjct: 340 gaactctacctgaactacaggt 319
>dbj|AB063124.1| Coturnix japonica DNA, microsatellite locus GUJ0056 Length = 183 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 175 cttaacaagcccctgcagaag 195 ||||||||||||||||||||| Sbjct: 112 cttaacaagcccctgcagaag 132
>gb|AC168049.2| Mus musculus BAC clone RP23-246L6 from chromosome 10, complete sequence Length = 229657 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 tgacagagaaggacatcaga 339 |||||||||||||||||||| Sbjct: 113452 tgacagagaaggacatcaga 113433
>gb|AC125110.4| Mus musculus BAC clone RP24-235E14 from chromosome 18, complete sequence Length = 187634 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 agcccagagagcaactctga 158 |||||||||||||||||||| Sbjct: 157411 agcccagagagcaactctga 157392
>gb|AC067964.18| Mus Musculus Strain C57BL6/J Chromosome 5 RP23-337K7, complete sequence Length = 219769 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 317 cattgacagagaaggacatcagag 340 |||||||||||||||| ||||||| Sbjct: 104070 cattgacagagaaggaaatcagag 104093
>gb|AC077689.9| Mus Musculus Strain C57BL6/J Chromosome 5 RP23-301H20, complete sequence Length = 213462 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 317 cattgacagagaaggacatcagag 340 |||||||||||||||| ||||||| Sbjct: 208631 cattgacagagaaggaaatcagag 208654
>gb|AF067845.1|AF067845 Homo sapiens clone P1-4248, complete sequence Length = 108932 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 ccctgcagaagagtggcagt 204 |||||||||||||||||||| Sbjct: 17747 ccctgcagaagagtggcagt 17766
>gb|AC162939.6| Mus musculus BAC clone RP23-97G12 from chromosome 10, complete sequence Length = 247228 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 tgacagagaaggacatcaga 339 |||||||||||||||||||| Sbjct: 26124 tgacagagaaggacatcaga 26105
>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome Length = 2905187 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 tcccgaacattgcttttggt 366 |||||||||||||||||||| Sbjct: 548125 tcccgaacattgcttttggt 548144
>gb|AC110288.10| Homo sapiens chromosome 8, clone CTD-2281E23, complete sequence Length = 102752 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 ccctgcagaagagtggcagt 204 |||||||||||||||||||| Sbjct: 94410 ccctgcagaagagtggcagt 94429 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,018,872 Number of Sequences: 3902068 Number of extensions: 4018872 Number of successful extensions: 97369 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97296 Number of HSP's gapped (non-prelim): 67 length of query: 540 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 517 effective length of database: 17,143,297,704 effective search space: 8863084912968 effective search space used: 8863084912968 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)