ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd13o08 |
|---|---|
| Clone Library Name | barley_pub |
>NU3C_WHEAT (P26303) NAD(P)H-quinone oxidoreductase chain 3, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 3) (NADH-plastoquinone oxidoreductase chain 3) Length = 120 Score = 62.4 bits (150), Expect = 1e-09 Identities = 30/31 (96%), Positives = 31/31 (100%) Frame = +2 Query: 554 MFLLYEYDIFWTFLIIASLIPILAFSISGLL 646 MFLL+EYDIFWTFLIIASLIPILAFSISGLL Sbjct: 1 MFLLHEYDIFWTFLIIASLIPILAFSISGLL 31
>NU3C_SACOF (Q6ENV8) NAD(P)H-quinone oxidoreductase chain 3, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 3) (NADH-plastoquinone oxidoreductase chain 3) Length = 120 Score = 58.2 bits (139), Expect = 2e-08 Identities = 28/31 (90%), Positives = 29/31 (93%) Frame = +2 Query: 554 MFLLYEYDIFWTFLIIASLIPILAFSISGLL 646 MFLL+EYDIFWTFLIIASLIPIL F ISGLL Sbjct: 1 MFLLHEYDIFWTFLIIASLIPILVFWISGLL 31
>NU3C_SACHY (Q6L394) NAD(P)H-quinone oxidoreductase chain 3, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 3) (NADH-plastoquinone oxidoreductase chain 3) Length = 120 Score = 58.2 bits (139), Expect = 2e-08 Identities = 28/31 (90%), Positives = 29/31 (93%) Frame = +2 Query: 554 MFLLYEYDIFWTFLIIASLIPILAFSISGLL 646 MFLL+EYDIFWTFLIIASLIPIL F ISGLL Sbjct: 1 MFLLHEYDIFWTFLIIASLIPILVFWISGLL 31
>NU3C_OENHO (Q9MTP5) NAD(P)H-quinone oxidoreductase chain 3, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 3) (NADH-plastoquinone oxidoreductase chain 3) Length = 120 Score = 58.2 bits (139), Expect = 2e-08 Identities = 27/31 (87%), Positives = 29/31 (93%) Frame = +2 Query: 554 MFLLYEYDIFWTFLIIASLIPILAFSISGLL 646 MFLLYEYDIFW FLII+S+IPILAF ISGLL Sbjct: 1 MFLLYEYDIFWAFLIISSVIPILAFRISGLL 31
>NU3C_MAIZE (P19044) NAD(P)H-quinone oxidoreductase chain 3, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 3) (NADH-plastoquinone oxidoreductase chain 3) Length = 120 Score = 58.2 bits (139), Expect = 2e-08 Identities = 28/31 (90%), Positives = 29/31 (93%) Frame = +2 Query: 554 MFLLYEYDIFWTFLIIASLIPILAFSISGLL 646 MFLL+EYDIFWTFLIIASLIPIL F ISGLL Sbjct: 1 MFLLHEYDIFWTFLIIASLIPILVFWISGLL 31
>NU3C_LUPLU (P52765) NAD(P)H-quinone oxidoreductase chain 3, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 3) (NADH-plastoquinone oxidoreductase chain 3) Length = 120 Score = 58.2 bits (139), Expect = 2e-08 Identities = 27/31 (87%), Positives = 29/31 (93%) Frame = +2 Query: 554 MFLLYEYDIFWTFLIIASLIPILAFSISGLL 646 MFLLYEYDIFW FLII+SLIPILAF ISG+L Sbjct: 1 MFLLYEYDIFWAFLIISSLIPILAFLISGIL 31
>NU3C_SPIOL (Q9M3L9) NAD(P)H-quinone oxidoreductase chain 3, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 3) (NADH-plastoquinone oxidoreductase chain 3) Length = 120 Score = 55.5 bits (132), Expect = 1e-07 Identities = 25/31 (80%), Positives = 28/31 (90%) Frame = +2 Query: 554 MFLLYEYDIFWTFLIIASLIPILAFSISGLL 646 MFLLYEYDIFW FLII+S+IPILAF SG+L Sbjct: 1 MFLLYEYDIFWAFLIISSVIPILAFLFSGIL 31
>NU3C_ORYSA (P12126) NAD(P)H-quinone oxidoreductase chain 3, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 3) (NADH-plastoquinone oxidoreductase chain 3) Length = 120 Score = 55.5 bits (132), Expect = 1e-07 Identities = 27/31 (87%), Positives = 28/31 (90%) Frame = +2 Query: 554 MFLLYEYDIFWTFLIIASLIPILAFSISGLL 646 MFLL+EYDIFW FLIIASLIPILAF IS LL Sbjct: 1 MFLLHEYDIFWAFLIIASLIPILAFWISALL 31
>NU3C_ORYNI (Q6ENG9) NAD(P)H-quinone oxidoreductase chain 3, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 3) (NADH-plastoquinone oxidoreductase chain 3) Length = 120 Score = 55.5 bits (132), Expect = 1e-07 Identities = 27/31 (87%), Positives = 28/31 (90%) Frame = +2 Query: 554 MFLLYEYDIFWTFLIIASLIPILAFSISGLL 646 MFLL+EYDIFW FLIIASLIPILAF IS LL Sbjct: 1 MFLLHEYDIFWAFLIIASLIPILAFWISALL 31
>NU3C_LOTJA (Q9BBT8) NAD(P)H-quinone oxidoreductase chain 3, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 3) (NADH-plastoquinone oxidoreductase chain 3) Length = 120 Score = 54.7 bits (130), Expect = 2e-07 Identities = 25/31 (80%), Positives = 27/31 (87%) Frame = +2 Query: 554 MFLLYEYDIFWTFLIIASLIPILAFSISGLL 646 MFLLYEYDIFW FLII+ IPILAF+ISG L Sbjct: 1 MFLLYEYDIFWAFLIISIFIPILAFTISGFL 31
>NU3C_ARATH (P56751) NAD(P)H-quinone oxidoreductase chain 3, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 3) (NADH-plastoquinone oxidoreductase chain 3) Length = 120 Score = 54.7 bits (130), Expect = 2e-07 Identities = 24/31 (77%), Positives = 28/31 (90%) Frame = +2 Query: 554 MFLLYEYDIFWTFLIIASLIPILAFSISGLL 646 MFLLYEYDIFW FL+I+S IP+LAF ISG+L Sbjct: 1 MFLLYEYDIFWAFLLISSAIPVLAFLISGVL 31
>NU3C_TOBAC (P06258) NAD(P)H-quinone oxidoreductase chain 3, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 3) (NADH-plastoquinone oxidoreductase chain 3) Length = 120 Score = 53.5 bits (127), Expect = 5e-07 Identities = 24/31 (77%), Positives = 27/31 (87%) Frame = +2 Query: 554 MFLLYEYDIFWTFLIIASLIPILAFSISGLL 646 MFLLYEYD FW FLII+ L+PILAF ISG+L Sbjct: 1 MFLLYEYDFFWAFLIISILVPILAFLISGVL 31
>NU3C_ANTFO (Q31792) NAD(P)H-quinone oxidoreductase chain 3, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 3) (NADH-plastoquinone oxidoreductase chain 3) Length = 120 Score = 43.5 bits (101), Expect = 5e-04 Identities = 19/31 (61%), Positives = 26/31 (83%) Frame = +2 Query: 554 MFLLYEYDIFWTFLIIASLIPILAFSISGLL 646 MFL+ +Y+ FW FL+IASLIP +AFSIS ++ Sbjct: 1 MFLVSKYNYFWIFLLIASLIPTIAFSISRVI 31
>NU3C_ADICA (Q85FL5) NAD(P)H-quinone oxidoreductase chain 3, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 3) (NADH-plastoquinone oxidoreductase chain 3) Length = 120 Score = 39.7 bits (91), Expect = 0.008 Identities = 16/28 (57%), Positives = 22/28 (78%) Frame = +2 Query: 554 MFLLYEYDIFWTFLIIASLIPILAFSIS 637 MFL ++YD FW FL++ IP+LAFSI+ Sbjct: 1 MFLSHQYDSFWIFLLVCISIPLLAFSIT 28
>NU3C_MARPO (P06259) NAD(P)H-quinone oxidoreductase chain 3, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 3) (NADH-plastoquinone oxidoreductase chain 3) Length = 120 Score = 35.0 bits (79), Expect = 0.19 Identities = 16/28 (57%), Positives = 20/28 (71%) Frame = +2 Query: 554 MFLLYEYDIFWTFLIIASLIPILAFSIS 637 MFLL +YD F+ FL+I S IL FS+S Sbjct: 1 MFLLQKYDYFFVFLLIISFFSILIFSLS 28
>NU3C_MESVI (Q9MUQ9) NAD(P)H-quinone oxidoreductase chain 3, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 3) (NADH-plastoquinone oxidoreductase chain 3) Length = 120 Score = 34.3 bits (77), Expect = 0.33 Identities = 17/31 (54%), Positives = 21/31 (67%) Frame = +2 Query: 554 MFLLYEYDIFWTFLIIASLIPILAFSISGLL 646 MF+L YD F F I+A L+PILA S S L+ Sbjct: 1 MFILEGYDSFVVFFIVACLVPILALSGSKLI 31
>NU3C_SYNY3 (P19045) NAD(P)H-quinone oxidoreductase chain 3 (EC 1.6.5.-)| (NAD(P)H dehydrogenase I, chain 3) (NDH-1, chain 3) Length = 120 Score = 33.5 bits (75), Expect = 0.56 Identities = 16/31 (51%), Positives = 21/31 (67%) Frame = +2 Query: 554 MFLLYEYDIFWTFLIIASLIPILAFSISGLL 646 MF+L Y+ F FL I SL+P+LA + S LL Sbjct: 1 MFVLTGYEYFLGFLFICSLVPVLALTASKLL 31
>NU3C_ANAVT (P0A3S6) NAD(P)H-quinone oxidoreductase chain 3 (EC 1.6.5.-)| (NAD(P)H dehydrogenase I, chain 3) (NDH-1, chain 3) (NDH-C) Length = 120 Score = 32.3 bits (72), Expect = 1.2 Identities = 17/31 (54%), Positives = 20/31 (64%) Frame = +2 Query: 554 MFLLYEYDIFWTFLIIASLIPILAFSISGLL 646 MF+L Y+ FLII SL+P LA S S LL Sbjct: 1 MFVLSGYEYLLGFLIICSLVPALALSASKLL 31
>NU3C_ANASP (P0A3S5) NAD(P)H-quinone oxidoreductase chain 3 (EC 1.6.5.-)| (NAD(P)H dehydrogenase I, chain 3) (NDH-1, chain 3) (NDH-C) Length = 120 Score = 32.3 bits (72), Expect = 1.2 Identities = 17/31 (54%), Positives = 20/31 (64%) Frame = +2 Query: 554 MFLLYEYDIFWTFLIIASLIPILAFSISGLL 646 MF+L Y+ FLII SL+P LA S S LL Sbjct: 1 MFVLSGYEYLLGFLIICSLVPALALSASKLL 31
>SOS_DROME (P26675) Protein son of sevenless| Length = 1596 Score = 30.8 bits (68), Expect = 3.6 Identities = 19/51 (37%), Positives = 23/51 (45%) Frame = +3 Query: 255 LEKARQSETIKFSLYKNXXXXXXXXXEWKSKRKGVGIPLDESLKKMQHRGN 407 LE ARQ ++F +YKN W K K V P LK M+H N Sbjct: 831 LELARQLTLLEFEMYKNVKPSELVGSPWTKKDKEVKSP--NLLKIMKHTTN 879
>ATM_HUMAN (Q13315) Serine-protein kinase ATM (EC 2.7.11.1) (Ataxia| telangiectasia mutated) (A-T, mutated) Length = 3056 Score = 30.0 bits (66), Expect = 6.2 Identities = 9/22 (40%), Positives = 18/22 (81%) Frame = +3 Query: 333 EWKSKRKGVGIPLDESLKKMQH 398 +WK++RKG+ IP D+ + K+++ Sbjct: 2637 QWKTQRKGINIPADQPITKLKN 2658
>NU3C_NEPOL (Q9TKX9) NAD(P)H-quinone oxidoreductase chain 3, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 3) (NADH-plastoquinone oxidoreductase chain 3) Length = 120 Score = 30.0 bits (66), Expect = 6.2 Identities = 15/31 (48%), Positives = 19/31 (61%) Frame = +2 Query: 554 MFLLYEYDIFWTFLIIASLIPILAFSISGLL 646 M +L Y F +IASLIP++A S S LL Sbjct: 1 MMILEGYGSVLAFFVIASLIPVIALSASKLL 31 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,520,281 Number of Sequences: 219361 Number of extensions: 1094374 Number of successful extensions: 1945 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 1926 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1945 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6086476506 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
