ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd14d05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_183719.1| Oryza sativa (japonica cultivar-group), predic... 141 2e-30
2dbj|AK067157.1| Oryza sativa (japonica cultivar-group) cDNA clon... 141 2e-30
3gb|AY110962.1| Zea mays CL3066_1 mRNA sequence 121 2e-24
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 80 6e-12
5dbj|AP003722.3| Oryza sativa (japonica cultivar-group) genomic D... 80 6e-12
6emb|AJ308111.1|LFL308111 Lampetra fluviatilis mRNA for keratin g... 46 0.091
7gb|AE014849.1| Plasmodium falciparum 3D7 chromosome 12, section ... 42 1.4
8emb|CR936245.3| Mouse DNA sequence from clone DN-143F13 on chrom... 42 1.4
9gb|AC009459.6| Drosophila melanogaster, chromosome 2R, region 57... 42 1.4
10gb|AC009912.5|AC009912 Drosophila melanogaster, chromosome 2R, r... 42 1.4
11gb|AF195023.1|AF195023 Plasmodium falciparum SHMT (shmt) mRNA, c... 42 1.4
12gb|AE003454.3| Drosophila melanogaster chromosome 2R, section 62... 42 1.4
13gb|AC165224.9| Mus musculus chromosome 5, clone RP24-389L10, com... 40 5.6
14gb|AC008569.7| Homo sapiens chromosome 19 clone CTC-548K16, comp... 40 5.6
15gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 5.6
16gb|AC068675.17| Homo sapiens chromosome 17, clone RP11-392O1, co... 40 5.6
17gb|AC026591.15| Homo sapiens chromosome 17, clone RP11-655D3, co... 40 5.6
18emb|AL117192.5|CNS01DRE Human chromosome 14 DNA sequence BAC R-8... 40 5.6
19gb|AC110572.13| Mus musculus chromosome 5, clone RP23-316P20, co... 40 5.6
20emb|AL590994.13| Mouse DNA sequence from clone RP23-382C19 on ch... 40 5.6 
>ref|NM_183719.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1512

 Score =  141 bits (71), Expect = 2e-30
 Identities = 134/155 (86%)
 Strand = Plus / Plus

                                                                        
Query: 44   cttcctcgctttgatgatgacgaaaacgtttacccgtcctcgataatcaatgtgaccgtc 103
            |||||||||||||||||||| ||||| ||||| || ||||| |||||||||||||| || 
Sbjct: 1348 cttcctcgctttgatgatgatgaaaatgtttatccttcctcaataatcaatgtgactgtt 1407

                                                                        
Query: 104  ggagccgatcacagagtcgtcgacggtgccacggttgcaaggttttgcaacgagtggaaa 163
            ||||| |||||| |||| || ||||| ||||| ||||||||||| || || |||||||||
Sbjct: 1408 ggagctgatcaccgagttgttgacggcgccaccgttgcaaggttctgtaatgagtggaaa 1467

                                               
Query: 164  agcctggtggagaagccggagctgctcttgctgca 198
            ||||| ||||||||||| || | ||| ||||||||
Sbjct: 1468 agccttgtggagaagccagaacggctattgctgca 1502
to top
>dbj|AK067157.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097E09, full
            insert sequence
          Length = 2003

 Score =  141 bits (71), Expect = 2e-30
 Identities = 134/155 (86%)
 Strand = Plus / Plus

                                                                        
Query: 44   cttcctcgctttgatgatgacgaaaacgtttacccgtcctcgataatcaatgtgaccgtc 103
            |||||||||||||||||||| ||||| ||||| || ||||| |||||||||||||| || 
Sbjct: 1599 cttcctcgctttgatgatgatgaaaatgtttatccttcctcaataatcaatgtgactgtt 1658

                                                                        
Query: 104  ggagccgatcacagagtcgtcgacggtgccacggttgcaaggttttgcaacgagtggaaa 163
            ||||| |||||| |||| || ||||| ||||| ||||||||||| || || |||||||||
Sbjct: 1659 ggagctgatcaccgagttgttgacggcgccaccgttgcaaggttctgtaatgagtggaaa 1718

                                               
Query: 164  agcctggtggagaagccggagctgctcttgctgca 198
            ||||| ||||||||||| || | ||| ||||||||
Sbjct: 1719 agccttgtggagaagccagaacggctattgctgca 1753
to top
>gb|AY110962.1| Zea mays CL3066_1 mRNA sequence
          Length = 1007

 Score =  121 bits (61), Expect = 2e-24
 Identities = 123/144 (85%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctacccgaggttgcgatcattgntcttggccgcattcagatgcttcctcgctttgatga 60
           |||||| || ||||| |||||||  ||||| || ||||| | |||||||||||| |||||
Sbjct: 352 cctacctgaagttgccatcattgcccttgggcggattcaaaagcttcctcgcttcgatga 293

                                                                       
Query: 61  tgacgaaaacgtttacccgtcctcgataatcaatgtgaccgtcggagccgatcacagagt 120
           |||||||||||||||||| || || ||||||||||| || || |||||||||||| ||||
Sbjct: 292 tgacgaaaacgtttacccttcatccataatcaatgttactgttggagccgatcaccgagt 233

                                   
Query: 121 cgtcgacggtgccacggttgcaag 144
            || ||||| ||| ||||||||||
Sbjct: 232 tgttgacggggccccggttgcaag 209
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 88/104 (84%)
 Strand = Plus / Minus

                                                                            
Query: 95       gtgaccgtcggagccgatcacagagtcgtcgacggtgccacggttgcaaggttttgcaac 154
                ||||| || ||||| |||||| |||| || ||||| ||||| ||||||||||| || || 
Sbjct: 11787393 gtgactgttggagctgatcaccgagttgttgacggcgccaccgttgcaaggttctgtaat 11787334

                                                            
Query: 155      gagtggaaaagcctggtggagaagccggagctgctcttgctgca 198
                |||||||||||||| ||||||||||| || | ||| ||||||||
Sbjct: 11787333 gagtggaaaagccttgtggagaagccagaacggctattgctgca 11787290



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                     
Query: 44       cttcctcgctttgatgatgacgaaaacgtttacccgtcctcgataatcaatgt 96
                |||||||||||||||||||| ||||| ||||| || ||||| |||||||||||
Sbjct: 11787537 cttcctcgctttgatgatgatgaaaatgtttatccttcctcaataatcaatgt 11787485
to top
>dbj|AP003722.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1011A07
          Length = 150590

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 88/104 (84%)
 Strand = Plus / Minus

                                                                          
Query: 95     gtgaccgtcggagccgatcacagagtcgtcgacggtgccacggttgcaaggttttgcaac 154
              ||||| || ||||| |||||| |||| || ||||| ||||| ||||||||||| || || 
Sbjct: 126561 gtgactgttggagctgatcaccgagttgttgacggcgccaccgttgcaaggttctgtaat 126502

                                                          
Query: 155    gagtggaaaagcctggtggagaagccggagctgctcttgctgca 198
              |||||||||||||| ||||||||||| || | ||| ||||||||
Sbjct: 126501 gagtggaaaagccttgtggagaagccagaacggctattgctgca 126458



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                   
Query: 44     cttcctcgctttgatgatgacgaaaacgtttacccgtcctcgataatcaatgt 96
              |||||||||||||||||||| ||||| ||||| || ||||| |||||||||||
Sbjct: 126705 cttcctcgctttgatgatgatgaaaatgtttatccttcctcaataatcaatgt 126653
to top
>emb|AJ308111.1|LFL308111 Lampetra fluviatilis mRNA for keratin gamma 2
          Length = 2068

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 167  ctggtggagaagccggagctgct 189
            |||||||||||||||||||||||
Sbjct: 1594 ctggtggagaagccggagctgct 1572
to top
>gb|AE014849.1| Plasmodium falciparum 3D7 chromosome 12, section 6 of 9 of the complete
              sequence
          Length = 250421

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 371    caccttggaaacttggaaata 391
              |||||||||||||||||||||
Sbjct: 227112 caccttggaaacttggaaata 227092
to top
>emb|CR936245.3| Mouse DNA sequence from clone DN-143F13 on chromosome 11, complete
            sequence
          Length = 10755

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 230  atgcagagggaactctgccat 250
            |||||||||||||||||||||
Sbjct: 5996 atgcagagggaactctgccat 5976
to top
>gb|AC009459.6| Drosophila melanogaster, chromosome 2R, region 57E-57F, BAC clone
             BACR34C17, complete sequence
          Length = 167447

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 177   agccggagctgctcttgctgc 197
             |||||||||||||||||||||
Sbjct: 69233 agccggagctgctcttgctgc 69253
to top
>gb|AC009912.5|AC009912 Drosophila melanogaster, chromosome 2R, region 57F-58A, BAC clone
             BACR46G10, complete sequence
          Length = 165158

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 177   agccggagctgctcttgctgc 197
             |||||||||||||||||||||
Sbjct: 30662 agccggagctgctcttgctgc 30682
to top
>gb|AF195023.1|AF195023 Plasmodium falciparum SHMT (shmt) mRNA, complete cds
          Length = 1668

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 371  caccttggaaacttggaaata 391
            |||||||||||||||||||||
Sbjct: 1050 caccttggaaacttggaaata 1030
to top
>gb|AE003454.3| Drosophila melanogaster chromosome 2R, section 62 of 73 of the complete
              sequence
          Length = 313634

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 177    agccggagctgctcttgctgc 197
              |||||||||||||||||||||
Sbjct: 219769 agccggagctgctcttgctgc 219789
to top
>gb|AC165224.9| Mus musculus chromosome 5, clone RP24-389L10, complete sequence
          Length = 155046

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 166    cctggtggagaagccggagctgct 189
              ||||||||||||||| ||||||||
Sbjct: 109099 cctggtggagaagcccgagctgct 109076
to top
>gb|AC008569.7| Homo sapiens chromosome 19 clone CTC-548K16, complete sequence
          Length = 227245

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 164    agcctggtggagaagccgga 183
              ||||||||||||||||||||
Sbjct: 206028 agcctggtggagaagccgga 206009
to top
>gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome I,
              complete sequence
          Length = 691920

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 185    ctgctcttgctgcacacgcggtga 208
              |||| |||||||||||||||||||
Sbjct: 399505 ctgcgcttgctgcacacgcggtga 399528
to top
>gb|AC068675.17| Homo sapiens chromosome 17, clone RP11-392O1, complete sequence
          Length = 164611

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    cagagggaactctgccatct 252
              ||||||||||||||||||||
Sbjct: 137914 cagagggaactctgccatct 137933
to top
>gb|AC026591.15| Homo sapiens chromosome 17, clone RP11-655D3, complete sequence
          Length = 153472

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 351    ccctgtgcatatgtgtgcat 370
              ||||||||||||||||||||
Sbjct: 109696 ccctgtgcatatgtgtgcat 109715
to top
>emb|AL117192.5|CNS01DRE Human chromosome 14 DNA sequence BAC R-862G15 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 210869

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 155    gagtggaaaagcctggtgga 174
              ||||||||||||||||||||
Sbjct: 104981 gagtggaaaagcctggtgga 104962
to top
>gb|AC110572.13| Mus musculus chromosome 5, clone RP23-316P20, complete sequence
          Length = 170850

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 166    cctggtggagaagccggagctgct 189
              ||||||||||||||| ||||||||
Sbjct: 154613 cctggtggagaagcccgagctgct 154636
to top
>emb|AL590994.13| Mouse DNA sequence from clone RP23-382C19 on chromosome 11, complete
              sequence
          Length = 207814

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 233    cagagggaactctgccatct 252
              ||||||||||||||||||||
Sbjct: 205410 cagagggaactctgccatct 205391


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,886,790
Number of Sequences: 3902068
Number of extensions: 2886790
Number of successful extensions: 62368
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62306
Number of HSP's gapped (non-prelim): 62
length of query: 417
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 395
effective length of database: 17,147,199,772
effective search space: 6773143909940
effective search space used: 6773143909940
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top