ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd14c17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_183719.1| Oryza sativa (japonica cultivar-group), predic... 182 7e-43
2dbj|AK067157.1| Oryza sativa (japonica cultivar-group) cDNA clon... 182 7e-43
3gb|AY110962.1| Zea mays CL3066_1 mRNA sequence 163 6e-37
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
5dbj|AP003722.3| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
6emb|AJ308111.1|LFL308111 Lampetra fluviatilis mRNA for keratin g... 46 0.10
7gb|AE014849.1| Plasmodium falciparum 3D7 chromosome 12, section ... 42 1.6
8emb|CR936245.3| Mouse DNA sequence from clone DN-143F13 on chrom... 42 1.6
9gb|AC009459.6| Drosophila melanogaster, chromosome 2R, region 57... 42 1.6
10gb|AC009912.5|AC009912 Drosophila melanogaster, chromosome 2R, r... 42 1.6
11gb|AF195023.1|AF195023 Plasmodium falciparum SHMT (shmt) mRNA, c... 42 1.6
12gb|AE003454.3| Drosophila melanogaster chromosome 2R, section 62... 42 1.6
13gb|AC165224.9| Mus musculus chromosome 5, clone RP24-389L10, com... 40 6.4
14gb|AC008569.7| Homo sapiens chromosome 19 clone CTC-548K16, comp... 40 6.4
15gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 6.4
16gb|AC068675.17| Homo sapiens chromosome 17, clone RP11-392O1, co... 40 6.4
17gb|AC026591.15| Homo sapiens chromosome 17, clone RP11-655D3, co... 40 6.4
18emb|AL117192.5|CNS01DRE Human chromosome 14 DNA sequence BAC R-8... 40 6.4
19gb|AC110572.13| Mus musculus chromosome 5, clone RP23-316P20, co... 40 6.4
20emb|AL590994.13| Mouse DNA sequence from clone RP23-382C19 on ch... 40 6.4 
>ref|NM_183719.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1512

 Score =  182 bits (92), Expect = 7e-43
 Identities = 206/244 (84%)
 Strand = Plus / Plus

                                                                        
Query: 13   gcaacataggcgccatcggtggcaagtttgggtccccagttctcaacctacccgaggttg 72
            |||||||||||||||| |||||||||||||| || ||  |||||||| | || || ||||
Sbjct: 1259 gcaacataggcgccattggtggcaagtttggctctccgcttctcaacttgcctgaagttg 1318

                                                                        
Query: 73   cgatcattgctcttggccgcattcagatgcttcctcgctttgatgatgacgaaaacgttt 132
            | || ||||| || || |||||||| |  |||||||||||||||||||| ||||| ||||
Sbjct: 1319 ccattattgcactcggacgcattcaaaaacttcctcgctttgatgatgatgaaaatgttt 1378

                                                                        
Query: 133  acccgtcctcgataatcaatgtgaccgtcggagccgatcacagagtcgtcgacggtgcca 192
            | || ||||| |||||||||||||| || ||||| |||||| |||| || ||||| ||||
Sbjct: 1379 atccttcctcaataatcaatgtgactgttggagctgatcaccgagttgttgacggcgcca 1438

                                                                        
Query: 193  cggttgcaaggttttgcaacgagtggaaaagcctggtggagaagccggagctgctcttgc 252
            | ||||||||||| || || |||||||||||||| ||||||||||| || | ||| ||||
Sbjct: 1439 ccgttgcaaggttctgtaatgagtggaaaagccttgtggagaagccagaacggctattgc 1498

                
Query: 253  tgca 256
            ||||
Sbjct: 1499 tgca 1502
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>dbj|AK067157.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097E09, full
            insert sequence
          Length = 2003

 Score =  182 bits (92), Expect = 7e-43
 Identities = 206/244 (84%)
 Strand = Plus / Plus

                                                                        
Query: 13   gcaacataggcgccatcggtggcaagtttgggtccccagttctcaacctacccgaggttg 72
            |||||||||||||||| |||||||||||||| || ||  |||||||| | || || ||||
Sbjct: 1510 gcaacataggcgccattggtggcaagtttggctctccgcttctcaacttgcctgaagttg 1569

                                                                        
Query: 73   cgatcattgctcttggccgcattcagatgcttcctcgctttgatgatgacgaaaacgttt 132
            | || ||||| || || |||||||| |  |||||||||||||||||||| ||||| ||||
Sbjct: 1570 ccattattgcactcggacgcattcaaaaacttcctcgctttgatgatgatgaaaatgttt 1629

                                                                        
Query: 133  acccgtcctcgataatcaatgtgaccgtcggagccgatcacagagtcgtcgacggtgcca 192
            | || ||||| |||||||||||||| || ||||| |||||| |||| || ||||| ||||
Sbjct: 1630 atccttcctcaataatcaatgtgactgttggagctgatcaccgagttgttgacggcgcca 1689

                                                                        
Query: 193  cggttgcaaggttttgcaacgagtggaaaagcctggtggagaagccggagctgctcttgc 252
            | ||||||||||| || || |||||||||||||| ||||||||||| || | ||| ||||
Sbjct: 1690 ccgttgcaaggttctgtaatgagtggaaaagccttgtggagaagccagaacggctattgc 1749

                
Query: 253  tgca 256
            ||||
Sbjct: 1750 tgca 1753
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>gb|AY110962.1| Zea mays CL3066_1 mRNA sequence
          Length = 1007

 Score =  163 bits (82), Expect = 6e-37
 Identities = 160/186 (86%)
 Strand = Plus / Minus

                                                                       
Query: 17  cataggcgccatcggtggcaagtttgggtccccagttctcaacctacccgaggttgcgat 76
           |||||| ||||| |||||||||||||| || ||| |||| |||||||| || ||||| ||
Sbjct: 394 cataggtgccattggtggcaagtttggctctccacttctgaacctacctgaagttgccat 335

                                                                       
Query: 77  cattgctcttggccgcattcagatgcttcctcgctttgatgatgacgaaaacgtttaccc 136
           |||||| ||||| || ||||| | |||||||||||| |||||||||||||||||||||||
Sbjct: 334 cattgcccttgggcggattcaaaagcttcctcgcttcgatgatgacgaaaacgtttaccc 275

                                                                       
Query: 137 gtcctcgataatcaatgtgaccgtcggagccgatcacagagtcgtcgacggtgccacggt 196
            || || ||||||||||| || || |||||||||||| |||| || ||||| ||| ||||
Sbjct: 274 ttcatccataatcaatgttactgttggagccgatcaccgagttgttgacggggccccggt 215

                 
Query: 197 tgcaag 202
           ||||||
Sbjct: 214 tgcaag 209
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  107 bits (54), Expect = 3e-20
 Identities = 120/142 (84%)
 Strand = Plus / Minus

                                                                            
Query: 13       gcaacataggcgccatcggtggcaagtttgggtccccagttctcaacctacccgaggttg 72
                |||||||||||||||| |||||||||||||| || ||  |||||||| | || || ||||
Sbjct: 11787626 gcaacataggcgccattggtggcaagtttggctctccgcttctcaacttgcctgaagttg 11787567

                                                                            
Query: 73       cgatcattgctcttggccgcattcagatgcttcctcgctttgatgatgacgaaaacgttt 132
                | || ||||| || || |||||||| |  |||||||||||||||||||| ||||| ||||
Sbjct: 11787566 ccattattgcactcggacgcattcaaaaacttcctcgctttgatgatgatgaaaatgttt 11787507

                                      
Query: 133      acccgtcctcgataatcaatgt 154
                | || ||||| |||||||||||
Sbjct: 11787506 atccttcctcaataatcaatgt 11787485



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 88/104 (84%)
 Strand = Plus / Minus

                                                                            
Query: 153      gtgaccgtcggagccgatcacagagtcgtcgacggtgccacggttgcaaggttttgcaac 212
                ||||| || ||||| |||||| |||| || ||||| ||||| ||||||||||| || || 
Sbjct: 11787393 gtgactgttggagctgatcaccgagttgttgacggcgccaccgttgcaaggttctgtaat 11787334

                                                            
Query: 213      gagtggaaaagcctggtggagaagccggagctgctcttgctgca 256
                |||||||||||||| ||||||||||| || | ||| ||||||||
Sbjct: 11787333 gagtggaaaagccttgtggagaagccagaacggctattgctgca 11787290
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>dbj|AP003722.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1011A07
          Length = 150590

 Score =  107 bits (54), Expect = 3e-20
 Identities = 120/142 (84%)
 Strand = Plus / Minus

                                                                          
Query: 13     gcaacataggcgccatcggtggcaagtttgggtccccagttctcaacctacccgaggttg 72
              |||||||||||||||| |||||||||||||| || ||  |||||||| | || || ||||
Sbjct: 126794 gcaacataggcgccattggtggcaagtttggctctccgcttctcaacttgcctgaagttg 126735

                                                                          
Query: 73     cgatcattgctcttggccgcattcagatgcttcctcgctttgatgatgacgaaaacgttt 132
              | || ||||| || || |||||||| |  |||||||||||||||||||| ||||| ||||
Sbjct: 126734 ccattattgcactcggacgcattcaaaaacttcctcgctttgatgatgatgaaaatgttt 126675

                                    
Query: 133    acccgtcctcgataatcaatgt 154
              | || ||||| |||||||||||
Sbjct: 126674 atccttcctcaataatcaatgt 126653



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 88/104 (84%)
 Strand = Plus / Minus

                                                                          
Query: 153    gtgaccgtcggagccgatcacagagtcgtcgacggtgccacggttgcaaggttttgcaac 212
              ||||| || ||||| |||||| |||| || ||||| ||||| ||||||||||| || || 
Sbjct: 126561 gtgactgttggagctgatcaccgagttgttgacggcgccaccgttgcaaggttctgtaat 126502

                                                          
Query: 213    gagtggaaaagcctggtggagaagccggagctgctcttgctgca 256
              |||||||||||||| ||||||||||| || | ||| ||||||||
Sbjct: 126501 gagtggaaaagccttgtggagaagccagaacggctattgctgca 126458
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>emb|AJ308111.1|LFL308111 Lampetra fluviatilis mRNA for keratin gamma 2
          Length = 2068

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 225  ctggtggagaagccggagctgct 247
            |||||||||||||||||||||||
Sbjct: 1594 ctggtggagaagccggagctgct 1572
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>gb|AE014849.1| Plasmodium falciparum 3D7 chromosome 12, section 6 of 9 of the complete
              sequence
          Length = 250421

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 429    caccttggaaacttggaaata 449
              |||||||||||||||||||||
Sbjct: 227112 caccttggaaacttggaaata 227092
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>emb|CR936245.3| Mouse DNA sequence from clone DN-143F13 on chromosome 11, complete
            sequence
          Length = 10755

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 288  atgcagagggaactctgccat 308
            |||||||||||||||||||||
Sbjct: 5996 atgcagagggaactctgccat 5976
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>gb|AC009459.6| Drosophila melanogaster, chromosome 2R, region 57E-57F, BAC clone
             BACR34C17, complete sequence
          Length = 167447

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 235   agccggagctgctcttgctgc 255
             |||||||||||||||||||||
Sbjct: 69233 agccggagctgctcttgctgc 69253
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>gb|AC009912.5|AC009912 Drosophila melanogaster, chromosome 2R, region 57F-58A, BAC clone
             BACR46G10, complete sequence
          Length = 165158

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 235   agccggagctgctcttgctgc 255
             |||||||||||||||||||||
Sbjct: 30662 agccggagctgctcttgctgc 30682
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>gb|AF195023.1|AF195023 Plasmodium falciparum SHMT (shmt) mRNA, complete cds
          Length = 1668

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 429  caccttggaaacttggaaata 449
            |||||||||||||||||||||
Sbjct: 1050 caccttggaaacttggaaata 1030
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>gb|AE003454.3| Drosophila melanogaster chromosome 2R, section 62 of 73 of the complete
              sequence
          Length = 313634

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 235    agccggagctgctcttgctgc 255
              |||||||||||||||||||||
Sbjct: 219769 agccggagctgctcttgctgc 219789
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>gb|AC165224.9| Mus musculus chromosome 5, clone RP24-389L10, complete sequence
          Length = 155046

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 224    cctggtggagaagccggagctgct 247
              ||||||||||||||| ||||||||
Sbjct: 109099 cctggtggagaagcccgagctgct 109076
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>gb|AC008569.7| Homo sapiens chromosome 19 clone CTC-548K16, complete sequence
          Length = 227245

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 222    agcctggtggagaagccgga 241
              ||||||||||||||||||||
Sbjct: 206028 agcctggtggagaagccgga 206009
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>gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome I,
              complete sequence
          Length = 691920

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 243    ctgctcttgctgcacacgcggtga 266
              |||| |||||||||||||||||||
Sbjct: 399505 ctgcgcttgctgcacacgcggtga 399528
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>gb|AC068675.17| Homo sapiens chromosome 17, clone RP11-392O1, complete sequence
          Length = 164611

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 291    cagagggaactctgccatct 310
              ||||||||||||||||||||
Sbjct: 137914 cagagggaactctgccatct 137933
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>gb|AC026591.15| Homo sapiens chromosome 17, clone RP11-655D3, complete sequence
          Length = 153472

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 409    ccctgtgcatatgtgtgcat 428
              ||||||||||||||||||||
Sbjct: 109696 ccctgtgcatatgtgtgcat 109715
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>emb|AL117192.5|CNS01DRE Human chromosome 14 DNA sequence BAC R-862G15 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 210869

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 213    gagtggaaaagcctggtgga 232
              ||||||||||||||||||||
Sbjct: 104981 gagtggaaaagcctggtgga 104962
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>gb|AC110572.13| Mus musculus chromosome 5, clone RP23-316P20, complete sequence
          Length = 170850

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 224    cctggtggagaagccggagctgct 247
              ||||||||||||||| ||||||||
Sbjct: 154613 cctggtggagaagcccgagctgct 154636
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>emb|AL590994.13| Mouse DNA sequence from clone RP23-382C19 on chromosome 11, complete
              sequence
          Length = 207814

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 291    cagagggaactctgccatct 310
              ||||||||||||||||||||
Sbjct: 205410 cagagggaactctgccatct 205391


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,374,789
Number of Sequences: 3902068
Number of extensions: 3374789
Number of successful extensions: 68518
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68453
Number of HSP's gapped (non-prelim): 65
length of query: 475
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 453
effective length of database: 17,147,199,772
effective search space: 7767681496716
effective search space used: 7767681496716
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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