| Clone Name | basd14c10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_192144.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 873 Score = 172 bits (87), Expect = 2e-40 Identities = 151/174 (86%) Strand = Plus / Plus Query: 1 caagttattgatggtcaagtctgcatgaaagnataccactntgctgatccaacggaaaag 60 |||||||||||||| |||||||||||||||| || |||| | ||||| ||| ||| || Sbjct: 397 caagttattgatgggcaagtctgcatgaaagtgtatcacttttctgattcaatggataaa 456 Query: 61 aactntgacaggaaactaattctacctggttcattcaatcccttgcatgatggtcacctt 120 |||| |||||||| |||||||||||||||||||||||||| |||||||||| |||||| Sbjct: 457 aacttcaacaggaaaataattctacctggttcattcaatcccctgcatgatggacacctt 516 Query: 121 aagttgtnagaagttgcatcaagcatgtgtgatgatgggtttccgngctttgag 174 | | ||| |||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 517 aggctgttagaagttgcatcaagcatgtgtgatgatggtcttccatgctttgag 570
>dbj|AK107426.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-128-A02, full insert sequence Length = 1640 Score = 172 bits (87), Expect = 2e-40 Identities = 151/174 (86%) Strand = Plus / Plus Query: 1 caagttattgatggtcaagtctgcatgaaagnataccactntgctgatccaacggaaaag 60 |||||||||||||| |||||||||||||||| || |||| | ||||| ||| ||| || Sbjct: 607 caagttattgatgggcaagtctgcatgaaagtgtatcacttttctgattcaatggataaa 666 Query: 61 aactntgacaggaaactaattctacctggttcattcaatcccttgcatgatggtcacctt 120 |||| |||||||| |||||||||||||||||||||||||| |||||||||| |||||| Sbjct: 667 aacttcaacaggaaaataattctacctggttcattcaatcccctgcatgatggacacctt 726 Query: 121 aagttgtnagaagttgcatcaagcatgtgtgatgatgggtttccgngctttgag 174 | | ||| |||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 727 aggctgttagaagttgcatcaagcatgtgtgatgatggtcttccatgctttgag 780
>dbj|AK073675.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050M21, full insert sequence Length = 1559 Score = 165 bits (83), Expect = 5e-38 Identities = 150/174 (86%) Strand = Plus / Plus Query: 1 caagttattgatggtcaagtctgcatgaaagnataccactntgctgatccaacggaaaag 60 |||||||||||||| |||||||||||||||| || |||| | ||||| ||| ||| || Sbjct: 524 caagttattgatgggcaagtctgcatgaaagtgtatcacttttctgattcaatggataaa 583 Query: 61 aactntgacaggaaactaattctacctggttcattcaatcccttgcatgatggtcacctt 120 |||| |||||||| |||||||||||||||||||||||||| |||||||||| |||||| Sbjct: 584 aacttcaacaggaaaataattctacctggttcattcaatcccctgcatgatggacacctt 643 Query: 121 aagttgtnagaagttgcatcaagcatgtgtgatgatgggtttccgngctttgag 174 | | | | |||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 644 aggctattagaagttgcatcaagcatgtgtgatgatggtcttccatgctttgag 697
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 105 bits (53), Expect = 4e-20 Identities = 70/76 (92%) Strand = Plus / Minus Query: 68 acaggaaactaattctacctggttcattcaatcccttgcatgatggtcaccttaagttgt 127 |||||||| |||||||||||||||||||||||||| |||||||||| ||||||| | ||| Sbjct: 28536682 acaggaaaataattctacctggttcattcaatcccctgcatgatggacaccttaggctgt 28536623 Query: 128 nagaagttgcatcaag 143 ||||||||||||||| Sbjct: 28536622 tagaagttgcatcaag 28536607 Score = 54.0 bits (27), Expect = 1e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 1 caagttattgatggtcaagtctgcatgaaag 31 |||||||||||||| |||||||||||||||| Sbjct: 28536923 caagttattgatgggcaagtctgcatgaaag 28536893
>dbj|AP003450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0034C09 Length = 170226 Score = 105 bits (53), Expect = 4e-20 Identities = 70/76 (92%) Strand = Plus / Minus Query: 68 acaggaaactaattctacctggttcattcaatcccttgcatgatggtcaccttaagttgt 127 |||||||| |||||||||||||||||||||||||| |||||||||| ||||||| | ||| Sbjct: 63121 acaggaaaataattctacctggttcattcaatcccctgcatgatggacaccttaggctgt 63062 Query: 128 nagaagttgcatcaag 143 ||||||||||||||| Sbjct: 63061 tagaagttgcatcaag 63046 Score = 54.0 bits (27), Expect = 1e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 1 caagttattgatggtcaagtctgcatgaaag 31 |||||||||||||| |||||||||||||||| Sbjct: 63362 caagttattgatgggcaagtctgcatgaaag 63332
>gb|AC023170.10| Homo sapiens chromosome 10 clone RP11-373P23, complete sequence Length = 195448 Score = 40.1 bits (20), Expect = 2.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 68 acaggaaactaattctacctggtt 91 ||||||||||||| |||||||||| Sbjct: 25150 acaggaaactaatactacctggtt 25127
>ref|XM_465259.1| Oryza sativa (japonica cultivar-group), mRNA Length = 989 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 136 gcatcaagcatgtgtgatg 154 ||||||||||||||||||| Sbjct: 695 gcatcaagcatgtgtgatg 713
>ref|XM_506790.1| PREDICTED Oryza sativa (japonica cultivar-group), P0572D06.39-1 mRNA Length = 1117 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 136 gcatcaagcatgtgtgatg 154 ||||||||||||||||||| Sbjct: 715 gcatcaagcatgtgtgatg 733
>gb|AF488413.1| Oryza sativa chromosome 6 BAC 134P10, complete sequence Length = 136866 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 aagttattgatggtcaagt 20 ||||||||||||||||||| Sbjct: 45969 aagttattgatggtcaagt 45987
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 93 attcaatcccttgcatgat 111 ||||||||||||||||||| Sbjct: 4640905 attcaatcccttgcatgat 4640923
>emb|AL121941.14|HSDJ235B9 Human DNA sequence from clone RP1-235B9 on chromosome 6q15-16.1 Contains part of the BACH2 gene for BTB and CNC homology 1 basic leucine zipper transcription factor 2, complete sequence Length = 61884 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 10 gatggtcaagtctgcatga 28 ||||||||||||||||||| Sbjct: 32093 gatggtcaagtctgcatga 32075
>gb|AC021241.10| Homo sapiens chromosome 18, clone RP11-350K6, complete sequence Length = 160748 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 132 agttgcatcaagcatgtgt 150 ||||||||||||||||||| Sbjct: 149642 agttgcatcaagcatgtgt 149660
>gb|AC067859.7| Homo sapiens chromosome 18, clone RP11-569D6, complete sequence Length = 195609 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 132 agttgcatcaagcatgtgt 150 ||||||||||||||||||| Sbjct: 64478 agttgcatcaagcatgtgt 64496
>gb|AC022598.10| Homo sapiens chromosome 8, clone RP11-119K7, complete sequence Length = 155323 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 96 caatcccttgcatgatggt 114 ||||||||||||||||||| Sbjct: 97639 caatcccttgcatgatggt 97657
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 aagttattgatggtcaagt 20 ||||||||||||||||||| Sbjct: 1725754 aagttattgatggtcaagt 1725772
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 68 acaggaaactaattctacc 86 ||||||||||||||||||| Sbjct: 27930157 acaggaaactaattctacc 27930175 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 136 gcatcaagcatgtgtgatg 154 ||||||||||||||||||| Sbjct: 12623577 gcatcaagcatgtgtgatg 12623595
>dbj|AP000559.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0493C11 Length = 143113 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 aagttattgatggtcaagt 20 ||||||||||||||||||| Sbjct: 128925 aagttattgatggtcaagt 128943
>dbj|AP002542.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0679C08 Length = 156266 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 aagttattgatggtcaagt 20 ||||||||||||||||||| Sbjct: 50903 aagttattgatggtcaagt 50921
>dbj|AP004178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1123_G04 Length = 124666 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 68 acaggaaactaattctacc 86 ||||||||||||||||||| Sbjct: 57609 acaggaaactaattctacc 57627
>dbj|AP004024.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1134_B09 Length = 105247 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 136 gcatcaagcatgtgtgatg 154 ||||||||||||||||||| Sbjct: 20636 gcatcaagcatgtgtgatg 20654
>dbj|AP004798.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0572D06 Length = 148920 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 136 gcatcaagcatgtgtgatg 154 ||||||||||||||||||| Sbjct: 128110 gcatcaagcatgtgtgatg 128128
>dbj|AK068024.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134E19, full insert sequence Length = 1117 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 136 gcatcaagcatgtgtgatg 154 ||||||||||||||||||| Sbjct: 715 gcatcaagcatgtgtgatg 733
>dbj|AK060062.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-G08, full insert sequence Length = 989 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 136 gcatcaagcatgtgtgatg 154 ||||||||||||||||||| Sbjct: 695 gcatcaagcatgtgtgatg 713
>emb|AJ544601.1|TRU544601 Takifugu rubripes dmd gene upstream region 3 Length = 12905 Score = 38.2 bits (19), Expect = 8.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 143 gcatgtgtgatgatgggtt 161 ||||||||||||||||||| Sbjct: 1848 gcatgtgtgatgatgggtt 1830 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 895,502 Number of Sequences: 3902068 Number of extensions: 895502 Number of successful extensions: 57670 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57510 Number of HSP's gapped (non-prelim): 160 length of query: 174 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 152 effective length of database: 17,147,199,772 effective search space: 2606374365344 effective search space used: 2606374365344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)