ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd14c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_192144.1| Oryza sativa (japonica cultivar-group), predic... 172 2e-40
2dbj|AK107426.1| Oryza sativa (japonica cultivar-group) cDNA clon... 172 2e-40
3dbj|AK073675.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 5e-38
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 105 4e-20
5dbj|AP003450.3| Oryza sativa (japonica cultivar-group) genomic D... 105 4e-20
6gb|AC023170.10| Homo sapiens chromosome 10 clone RP11-373P23, co... 40 2.2
7ref|XM_465259.1| Oryza sativa (japonica cultivar-group), mRNA 38 8.5
8ref|XM_506790.1| PREDICTED Oryza sativa (japonica cultivar-group... 38 8.5
9gb|AF488413.1| Oryza sativa chromosome 6 BAC 134P10, complete se... 38 8.5
10gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 38 8.5
11emb|AL121941.14|HSDJ235B9 Human DNA sequence from clone RP1-235B... 38 8.5
12gb|AC021241.10| Homo sapiens chromosome 18, clone RP11-350K6, co... 38 8.5
13gb|AC067859.7| Homo sapiens chromosome 18, clone RP11-569D6, com... 38 8.5
14gb|AC022598.10| Homo sapiens chromosome 8, clone RP11-119K7, com... 38 8.5
15dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.5
16dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.5
17dbj|AP000559.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.5
18dbj|AP002542.2| Oryza sativa (japonica cultivar-group) genomic D... 38 8.5
19dbj|AP004178.3| Oryza sativa (japonica cultivar-group) genomic D... 38 8.5
20dbj|AP004024.3| Oryza sativa (japonica cultivar-group) genomic D... 38 8.5
21dbj|AP004798.2| Oryza sativa (japonica cultivar-group) genomic D... 38 8.5
22dbj|AK068024.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 8.5
23dbj|AK060062.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 8.5
24emb|AJ544601.1|TRU544601 Takifugu rubripes dmd gene upstream reg... 38 8.5

>ref|NM_192144.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 873

 Score =  172 bits (87), Expect = 2e-40
 Identities = 151/174 (86%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagttattgatggtcaagtctgcatgaaagnataccactntgctgatccaacggaaaag 60
           |||||||||||||| ||||||||||||||||  || |||| | ||||| ||| ||| || 
Sbjct: 397 caagttattgatgggcaagtctgcatgaaagtgtatcacttttctgattcaatggataaa 456

                                                                       
Query: 61  aactntgacaggaaactaattctacctggttcattcaatcccttgcatgatggtcacctt 120
           ||||   |||||||| |||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 457 aacttcaacaggaaaataattctacctggttcattcaatcccctgcatgatggacacctt 516

                                                                 
Query: 121 aagttgtnagaagttgcatcaagcatgtgtgatgatgggtttccgngctttgag 174
           | | ||| ||||||||||||||||||||||||||||||  ||||  ||||||||
Sbjct: 517 aggctgttagaagttgcatcaagcatgtgtgatgatggtcttccatgctttgag 570



to top

>dbj|AK107426.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-128-A02, full
           insert sequence
          Length = 1640

 Score =  172 bits (87), Expect = 2e-40
 Identities = 151/174 (86%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagttattgatggtcaagtctgcatgaaagnataccactntgctgatccaacggaaaag 60
           |||||||||||||| ||||||||||||||||  || |||| | ||||| ||| ||| || 
Sbjct: 607 caagttattgatgggcaagtctgcatgaaagtgtatcacttttctgattcaatggataaa 666

                                                                       
Query: 61  aactntgacaggaaactaattctacctggttcattcaatcccttgcatgatggtcacctt 120
           ||||   |||||||| |||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 667 aacttcaacaggaaaataattctacctggttcattcaatcccctgcatgatggacacctt 726

                                                                 
Query: 121 aagttgtnagaagttgcatcaagcatgtgtgatgatgggtttccgngctttgag 174
           | | ||| ||||||||||||||||||||||||||||||  ||||  ||||||||
Sbjct: 727 aggctgttagaagttgcatcaagcatgtgtgatgatggtcttccatgctttgag 780



to top

>dbj|AK073675.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050M21, full
           insert sequence
          Length = 1559

 Score =  165 bits (83), Expect = 5e-38
 Identities = 150/174 (86%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagttattgatggtcaagtctgcatgaaagnataccactntgctgatccaacggaaaag 60
           |||||||||||||| ||||||||||||||||  || |||| | ||||| ||| ||| || 
Sbjct: 524 caagttattgatgggcaagtctgcatgaaagtgtatcacttttctgattcaatggataaa 583

                                                                       
Query: 61  aactntgacaggaaactaattctacctggttcattcaatcccttgcatgatggtcacctt 120
           ||||   |||||||| |||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 584 aacttcaacaggaaaataattctacctggttcattcaatcccctgcatgatggacacctt 643

                                                                 
Query: 121 aagttgtnagaagttgcatcaagcatgtgtgatgatgggtttccgngctttgag 174
           | | | | ||||||||||||||||||||||||||||||  ||||  ||||||||
Sbjct: 644 aggctattagaagttgcatcaagcatgtgtgatgatggtcttccatgctttgag 697



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  105 bits (53), Expect = 4e-20
 Identities = 70/76 (92%)
 Strand = Plus / Minus

                                                                            
Query: 68       acaggaaactaattctacctggttcattcaatcccttgcatgatggtcaccttaagttgt 127
                |||||||| |||||||||||||||||||||||||| |||||||||| ||||||| | |||
Sbjct: 28536682 acaggaaaataattctacctggttcattcaatcccctgcatgatggacaccttaggctgt 28536623

                                
Query: 128      nagaagttgcatcaag 143
                 |||||||||||||||
Sbjct: 28536622 tagaagttgcatcaag 28536607



 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                               
Query: 1        caagttattgatggtcaagtctgcatgaaag 31
                |||||||||||||| ||||||||||||||||
Sbjct: 28536923 caagttattgatgggcaagtctgcatgaaag 28536893



to top

>dbj|AP003450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0034C09
          Length = 170226

 Score =  105 bits (53), Expect = 4e-20
 Identities = 70/76 (92%)
 Strand = Plus / Minus

                                                                         
Query: 68    acaggaaactaattctacctggttcattcaatcccttgcatgatggtcaccttaagttgt 127
             |||||||| |||||||||||||||||||||||||| |||||||||| ||||||| | |||
Sbjct: 63121 acaggaaaataattctacctggttcattcaatcccctgcatgatggacaccttaggctgt 63062

                             
Query: 128   nagaagttgcatcaag 143
              |||||||||||||||
Sbjct: 63061 tagaagttgcatcaag 63046



 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                            
Query: 1     caagttattgatggtcaagtctgcatgaaag 31
             |||||||||||||| ||||||||||||||||
Sbjct: 63362 caagttattgatgggcaagtctgcatgaaag 63332



to top

>gb|AC023170.10| Homo sapiens chromosome 10 clone RP11-373P23, complete sequence
          Length = 195448

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 68    acaggaaactaattctacctggtt 91
             ||||||||||||| ||||||||||
Sbjct: 25150 acaggaaactaatactacctggtt 25127



to top

>ref|XM_465259.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 989

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 136 gcatcaagcatgtgtgatg 154
           |||||||||||||||||||
Sbjct: 695 gcatcaagcatgtgtgatg 713



to top

>ref|XM_506790.1| PREDICTED Oryza sativa (japonica cultivar-group), P0572D06.39-1
           mRNA
          Length = 1117

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 136 gcatcaagcatgtgtgatg 154
           |||||||||||||||||||
Sbjct: 715 gcatcaagcatgtgtgatg 733



to top

>gb|AF488413.1| Oryza sativa chromosome 6 BAC 134P10, complete sequence
          Length = 136866

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 2     aagttattgatggtcaagt 20
             |||||||||||||||||||
Sbjct: 45969 aagttattgatggtcaagt 45987



to top

>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 93      attcaatcccttgcatgat 111
               |||||||||||||||||||
Sbjct: 4640905 attcaatcccttgcatgat 4640923



to top

>emb|AL121941.14|HSDJ235B9 Human DNA sequence from clone RP1-235B9 on chromosome 6q15-16.1
             Contains part of the BACH2 gene for BTB and CNC homology 1
             basic leucine zipper transcription factor 2, complete
             sequence
          Length = 61884

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 10    gatggtcaagtctgcatga 28
             |||||||||||||||||||
Sbjct: 32093 gatggtcaagtctgcatga 32075



to top

>gb|AC021241.10| Homo sapiens chromosome 18, clone RP11-350K6, complete sequence
          Length = 160748

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 132    agttgcatcaagcatgtgt 150
              |||||||||||||||||||
Sbjct: 149642 agttgcatcaagcatgtgt 149660



to top

>gb|AC067859.7| Homo sapiens chromosome 18, clone RP11-569D6, complete sequence
          Length = 195609

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 132   agttgcatcaagcatgtgt 150
             |||||||||||||||||||
Sbjct: 64478 agttgcatcaagcatgtgt 64496



to top

>gb|AC022598.10| Homo sapiens chromosome 8, clone RP11-119K7, complete sequence
          Length = 155323

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 96    caatcccttgcatgatggt 114
             |||||||||||||||||||
Sbjct: 97639 caatcccttgcatgatggt 97657



to top

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 2       aagttattgatggtcaagt 20
               |||||||||||||||||||
Sbjct: 1725754 aagttattgatggtcaagt 1725772



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 68       acaggaaactaattctacc 86
                |||||||||||||||||||
Sbjct: 27930157 acaggaaactaattctacc 27930175



 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 136      gcatcaagcatgtgtgatg 154
                |||||||||||||||||||
Sbjct: 12623577 gcatcaagcatgtgtgatg 12623595



to top

>dbj|AP000559.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              clone:P0493C11
          Length = 143113

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 2      aagttattgatggtcaagt 20
              |||||||||||||||||||
Sbjct: 128925 aagttattgatggtcaagt 128943



to top

>dbj|AP002542.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0679C08
          Length = 156266

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 2     aagttattgatggtcaagt 20
             |||||||||||||||||||
Sbjct: 50903 aagttattgatggtcaagt 50921



to top

>dbj|AP004178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1123_G04
          Length = 124666

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 68    acaggaaactaattctacc 86
             |||||||||||||||||||
Sbjct: 57609 acaggaaactaattctacc 57627



to top

>dbj|AP004024.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1134_B09
          Length = 105247

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 136   gcatcaagcatgtgtgatg 154
             |||||||||||||||||||
Sbjct: 20636 gcatcaagcatgtgtgatg 20654



to top

>dbj|AP004798.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0572D06
          Length = 148920

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 136    gcatcaagcatgtgtgatg 154
              |||||||||||||||||||
Sbjct: 128110 gcatcaagcatgtgtgatg 128128



to top

>dbj|AK068024.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134E19, full
           insert sequence
          Length = 1117

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 136 gcatcaagcatgtgtgatg 154
           |||||||||||||||||||
Sbjct: 715 gcatcaagcatgtgtgatg 733



to top

>dbj|AK060062.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-G08, full
           insert sequence
          Length = 989

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 136 gcatcaagcatgtgtgatg 154
           |||||||||||||||||||
Sbjct: 695 gcatcaagcatgtgtgatg 713



to top

>emb|AJ544601.1|TRU544601 Takifugu rubripes dmd gene upstream region 3
          Length = 12905

 Score = 38.2 bits (19), Expect = 8.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 143  gcatgtgtgatgatgggtt 161
            |||||||||||||||||||
Sbjct: 1848 gcatgtgtgatgatgggtt 1830


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 895,502
Number of Sequences: 3902068
Number of extensions: 895502
Number of successful extensions: 57670
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57510
Number of HSP's gapped (non-prelim): 160
length of query: 174
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 152
effective length of database: 17,147,199,772
effective search space: 2606374365344
effective search space used: 2606374365344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top