ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd13n07 |
|---|---|
| Clone Library Name | barley_pub |
>PSD13_BOVIN (Q5E964) 26S proteasome non-ATPase regulatory subunit 13 (26S| proteasome regulatory subunit S11) (26S proteasome regulatory subunit p40.5) Length = 376 Score = 127 bits (318), Expect = 4e-29 Identities = 73/213 (34%), Positives = 120/213 (56%) Frame = +3 Query: 30 FLEAQGSTRPELAEWYAALADLYQRKLWHQLTLKLDQFLALAVVQAGDALIQLYTHFISD 209 FL+ S+ P A + L +LY +KLWHQLTL++ F+ GD LI+LY +FIS+ Sbjct: 7 FLQQSQSSGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISE 66 Query: 210 FESKINLLKFAHFAVVVSRQYSDKDAGISYLEGVISKLHDTKESRIEEPVLYVKMQIASF 389 FE ++N L + V RQ +D + +S+LE K+ + +E V+ K I + Sbjct: 67 FEHRVNPLSLVEIILHVVRQMTDPNVALSFLEKTREKVKSS-----DEAVILCKTAIGAL 121 Query: 390 LLEKGNQKECKKLVDEGKTTLDSMDDVDPSVHSTYYWLCSQYHKVCQDYSEFYKNALLYL 569 L G+ + K+ +++ + L ++ V SVHS +Y L S+Y++ +++ +YK+AL +L Sbjct: 122 KLNIGDLQVTKETIEDVEEMLSNLPGV-TSVHSRFYDLSSKYYQTIGNHASYYKDALRFL 180 Query: 570 AYTTVESLSEPFKQNLAFDLSLAALLGDNIYNF 668 ++ L +Q AF L LA LLGD ++NF Sbjct: 181 GCVDIKDLPVSEQQERAFTLGLAGLLGDGVFNF 213
>PSD13_CHICK (P84169) 26S proteasome non-ATPase regulatory subunit 13 (26S| proteasome regulatory subunit S11) (26S proteasome regulatory subunit p40.5) Length = 376 Score = 126 bits (317), Expect = 5e-29 Identities = 74/213 (34%), Positives = 119/213 (55%) Frame = +3 Query: 30 FLEAQGSTRPELAEWYAALADLYQRKLWHQLTLKLDQFLALAVVQAGDALIQLYTHFISD 209 FL+ S P A + L +LY +KLWHQLTL++ F+ GD LI+LY +FIS+ Sbjct: 7 FLQQSQSAGPGQAAVWHRLEELYNKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISE 66 Query: 210 FESKINLLKFAHFAVVVSRQYSDKDAGISYLEGVISKLHDTKESRIEEPVLYVKMQIASF 389 FE ++N L + V RQ +D +++LE K+ + +E V+ K I + Sbjct: 67 FEHRVNPLSLVEIILHVVRQMTDPTVALTFLEKTREKVKSS-----DEAVILCKTAIGAL 121 Query: 390 LLEKGNQKECKKLVDEGKTTLDSMDDVDPSVHSTYYWLCSQYHKVCQDYSEFYKNALLYL 569 L G+ + K+ ++E + L+++ V SVHS +Y L S+Y++ +++ +YK+AL +L Sbjct: 122 KLNIGDLQVTKETIEEVEEMLNNLPGV-TSVHSRFYDLSSKYYQTIGNHASYYKDALRFL 180 Query: 570 AYTTVESLSEPFKQNLAFDLSLAALLGDNIYNF 668 V+ L +Q AF L LA LLG+ +YNF Sbjct: 181 GCIDVKDLPVSEQQERAFTLGLAGLLGEGVYNF 213
>PSD13_MOUSE (Q9WVJ2) 26S proteasome non-ATPase regulatory subunit 13 (26S| proteasome regulatory subunit S11) (26S proteasome regulatory subunit p40.5) Length = 376 Score = 125 bits (313), Expect = 1e-28 Identities = 71/213 (33%), Positives = 121/213 (56%) Frame = +3 Query: 30 FLEAQGSTRPELAEWYAALADLYQRKLWHQLTLKLDQFLALAVVQAGDALIQLYTHFISD 209 FL+ S+ P A + L +LY +KLWHQLTL++ F+ GD LI+LY +FIS+ Sbjct: 7 FLQQSQSSGPGQAAVWHRLEELYTKKLWHQLTLEVLDFVQDPCFAQGDGLIKLYENFISE 66 Query: 210 FESKINLLKFAHFAVVVSRQYSDKDAGISYLEGVISKLHDTKESRIEEPVLYVKMQIASF 389 FE ++N L + V RQ +D + +++LE K+ + +E V+ K I + Sbjct: 67 FEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSS-----DEAVILCKTAIGAL 121 Query: 390 LLEKGNQKECKKLVDEGKTTLDSMDDVDPSVHSTYYWLCSQYHKVCQDYSEFYKNALLYL 569 L G+ + K+ +++ + L+++ V SVHS +Y L S+Y++ +++ +YK+AL +L Sbjct: 122 KLNIGDLQATKETIEDVEEMLNNLPGV-TSVHSRFYDLSSKYYQTIGNHASYYKDALRFL 180 Query: 570 AYTTVESLSEPFKQNLAFDLSLAALLGDNIYNF 668 ++ L +Q AF L LA LLG+ ++NF Sbjct: 181 GCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNF 213
>PSD13_HUMAN (Q9UNM6) 26S proteasome non-ATPase regulatory subunit 13 (26S| proteasome regulatory subunit S11) (26S proteasome regulatory subunit p40.5) Length = 376 Score = 122 bits (307), Expect = 7e-28 Identities = 70/213 (32%), Positives = 120/213 (56%) Frame = +3 Query: 30 FLEAQGSTRPELAEWYAALADLYQRKLWHQLTLKLDQFLALAVVQAGDALIQLYTHFISD 209 FL+ S+ P + L +LY +KLWHQLTL++ F+ GD LI+LY +FIS+ Sbjct: 7 FLQQSQSSGPGQPAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISE 66 Query: 210 FESKINLLKFAHFAVVVSRQYSDKDAGISYLEGVISKLHDTKESRIEEPVLYVKMQIASF 389 FE ++N L + V RQ +D + +++LE K+ + +E V+ K I + Sbjct: 67 FEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSS-----DEAVILCKTAIGAL 121 Query: 390 LLEKGNQKECKKLVDEGKTTLDSMDDVDPSVHSTYYWLCSQYHKVCQDYSEFYKNALLYL 569 L G+ + K+ +++ + L+++ V SVHS +Y L S+Y++ +++ +YK+AL +L Sbjct: 122 KLNIGDLQVTKETIEDVEEMLNNLPGV-TSVHSRFYDLSSKYYQTIGNHASYYKDALRFL 180 Query: 570 AYTTVESLSEPFKQNLAFDLSLAALLGDNIYNF 668 ++ L +Q AF L LA LLG+ ++NF Sbjct: 181 GCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNF 213
>RPN9_SCHPO (Q9US13) Probable 26S proteasome regulatory subunit rpn9| Length = 381 Score = 109 bits (272), Expect = 9e-24 Identities = 69/214 (32%), Positives = 113/214 (52%), Gaps = 1/214 (0%) Frame = +3 Query: 30 FLEAQGSTRPE-LAEWYAALADLYQRKLWHQLTLKLDQFLALAVVQAGDALIQLYTHFIS 206 FL Q + PE L + Y + DLY+RKLW QLT L F + + LYT+F++ Sbjct: 12 FLHDQATRAPESLQQSYILMEDLYERKLWKQLTDALIVFFDTP--ETVPLRLPLYTNFVN 69 Query: 207 DFESKINLLKFAHFAVVVSRQYSDKDAGISYLEGVISKLHDTKESRIEEPVLYVKMQIAS 386 F IN LK + + S+ +A L + +++ E + ++ +Y + IA Sbjct: 70 SFRPNINQLKAVYMGLKAFESCSNDEA----LRNLNQIVNELDEEKYKDAYVYSIVAIAR 125 Query: 387 FLLEKGNQKECKKLVDEGKTTLDSMDDVDPSVHSTYYWLCSQYHKVCQDYSEFYKNALLY 566 L G E ++L+ + +D +D V+ +HS+YY + + Y+K DY+++Y++ LLY Sbjct: 126 IKLISGKLDEARELLVKASKIIDHIDYVESLIHSSYYSVSADYYKAKADYAQYYRHCLLY 185 Query: 567 LAYTTVESLSEPFKQNLAFDLSLAALLGDNIYNF 668 L+ ++ S A DLS+AA+LGD IYNF Sbjct: 186 LSCIDLDKCSHTELVERAVDLSVAAILGD-IYNF 218
>RPN9_YEAST (Q04062) 26S proteasome regulatory subunit RPN9 (Proteasome| non-ATPase subunit 7) Length = 393 Score = 103 bits (257), Expect = 5e-22 Identities = 68/215 (31%), Positives = 114/215 (53%), Gaps = 11/215 (5%) Frame = +3 Query: 57 PELAEWYAALADLYQRKLWHQLTLKLDQFLALAVVQAGDALIQLYTHFISDFESKINLLK 236 P L + Y+ KLW QL+ L +F A ++ ++LY +F+S F KIN L Sbjct: 20 PSLHPLFEQFEKFYEEKLWFQLSESLTKFFDDA--KSTPLRLRLYDNFVSKFYDKINQLS 77 Query: 237 FAHFAVVVSRQYSDKDAGISYLEGVISKLH--DTKESRIE------EPVLYVKMQIASFL 392 + + + D D + YL+ + ++ D+K+ R + +L + +IA Sbjct: 78 VVKYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTY 137 Query: 393 LEKGNQKECKKLVDEGKTTLDSMDDVDPSVHSTYYWLCSQYHKVCQDYSEFYKNALLYLA 572 L K + + + L+D+ + TLD D + + +++Y SQY K D++ FY +LLYL Sbjct: 138 LLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYL- 196 Query: 573 YTTVE---SLSEPFKQNLAFDLSLAALLGDNIYNF 668 +T+E S++ +Q LA+DLS++ALLGD IYNF Sbjct: 197 -STLEPSTSITLAERQQLAYDLSISALLGDKIYNF 230
>RPOD_BORBU (P52323) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 631 Score = 33.5 bits (75), Expect = 0.59 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 1/91 (1%) Frame = +3 Query: 282 DAGISYLEGVISKLHDTKESRIEEPV-LYVKMQIASFLLEKGNQKECKKLVDEGKTTLDS 458 D G Y++G + K+S E+P+ LY+K FLL + E K +D G++ +++ Sbjct: 121 DLGSGYIKGNV-----LKDSHSEDPIKLYLKEIGKEFLLTGNQEVELAKQMDSGESIIEN 175 Query: 459 MDDVDPSVHSTYYWLCSQYHKVCQDYSEFYK 551 + + V YY L + + + EF+K Sbjct: 176 ILKNEGLVIENYYNLVNTIYS-RMEREEFFK 205
>PB2_THOGV (Q9YNA4) Polymerase basic protein 2 (RNA-directed RNA polymerase| subunit P3) Length = 769 Score = 33.1 bits (74), Expect = 0.78 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 3/95 (3%) Frame = +3 Query: 267 QYSDKDAGISYLEGVISKLHDTKESRIEEPVLYVKMQIASFLLEKGNQKECKKLVDEGKT 446 QY+ D+ G + KL R+ EP+ V+ Q ++ + + L+D K Sbjct: 178 QYTTLDSKRKAHMGAVEKL-----KRVMEPICKVQTQESAVHI-------ARSLIDSNKK 225 Query: 447 TLDSMDDVDPSVHSTYYWLCSQYHKV---CQDYSE 542 L ++ D P ++LCS+YH V QD S+ Sbjct: 226 WLPTVVDHTPRTAEMAHFLCSKYHYVHTNTQDLSD 260
>RNP3_METTH (O26784) Ribonuclease P protein component 3 (EC 3.1.26.5) (RNase P| component 3) Length = 245 Score = 32.0 bits (71), Expect = 1.7 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 4/79 (5%) Frame = -2 Query: 468 HRPY-YPMWFSPRLPVSY---TPFDSLSQEENLQSASSHTERALQSVIPWYHAASKLRPQ 301 HR + +P+ + R Y TP D ++ E SS E +L S AS L + Sbjct: 174 HRKFGFPLLLTSRASSIYDLRTPGDIMNLAECFGMESSEAEESLTST-----PASIL--E 226 Query: 300 DSLYRHLYLSTGVKLLPRS 244 DS RHL ++ GV+LLP S Sbjct: 227 DSGNRHLLIAEGVRLLPES 245
>YNB3_SCHPO (Q9USS7) Hypothetical protein C4.03c in chromosome II| Length = 891 Score = 31.6 bits (70), Expect = 2.3 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 3/80 (3%) Frame = +3 Query: 210 FESKINLLKFAHF--AVVVSRQYSDKDAGI-SYLEGVISKLHDTKESRIEEPVLYVKMQI 380 ++ K+N AHF AV+ + ++ + +Y V SK +DT I EP++ V +I Sbjct: 578 YDGKLNGALDAHFQTAVLYTTPSGERRVRVVNYCCAVTSKSYDTISLAIVEPIVAVLAKI 637 Query: 381 ASFLLEKGNQKECKKLVDEG 440 AS + G+ K+ + EG Sbjct: 638 ASTNIAAGSLKDTSVRLVEG 657
>L_SV5 (Q88434) Large structural protein (Protein L) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2255 Score = 31.2 bits (69), Expect = 2.9 Identities = 25/128 (19%), Positives = 57/128 (44%), Gaps = 6/128 (4%) Frame = +3 Query: 300 LEGVISKLHDTKESRIEEPVLYVKMQIASFLLEKG--NQKECKKLVDEGKTTLDSMDDVD 473 L+ V++ HD+ RI + + +K Q+ ++ + N + ++ + + ++ Sbjct: 161 LKTVVAAWHDSDWKRISDFWIMIKFQMRQLIVRQTDHNDSDLITYIENREGIIIITPELV 220 Query: 474 PSVHSTYYWLCSQYHKVCQDYSEFYKNALLYLAYTTVESLSEPFKQNLAFDLS----LAA 641 ++ + L ++ S+ Y+ L+ TV + P K+ + + LS LA Sbjct: 221 ALFNTENHTLTYMTFEIVLMVSDMYEGRHNILSLCTVSTYLNPLKKRITYLLSLVDNLAF 280 Query: 642 LLGDNIYN 665 +GD +YN Sbjct: 281 QIGDAVYN 288
>FDHD_SULSO (Q97V15) Protein fdhD homolog| Length = 257 Score = 31.2 bits (69), Expect = 2.9 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 3/50 (6%) Frame = +3 Query: 234 KFAHFAVVVSRQYSDKDAGISYL--EGVISKLHDTKE-SRIEEPVLYVKM 374 K FA+++ DK+ + +L EGVI+ +HD ++ ++E V+ VK+ Sbjct: 39 KCEDFAIIMRTPGDDKELSLGFLYSEGVINSIHDVEDIKQVENNVIEVKL 88
>L_SV5WR (Q03396) Large structural protein (Protein L) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2255 Score = 30.8 bits (68), Expect = 3.8 Identities = 25/128 (19%), Positives = 57/128 (44%), Gaps = 6/128 (4%) Frame = +3 Query: 300 LEGVISKLHDTKESRIEEPVLYVKMQIASFLLEKG--NQKECKKLVDEGKTTLDSMDDVD 473 L+ V++ HD+ RI + + +K Q+ ++ + N + ++ + + ++ Sbjct: 161 LKTVVAAWHDSDWKRISDFWIMIKFQMRQLIVRQTDHNDPDLITYIENREGIIIITPELV 220 Query: 474 PSVHSTYYWLCSQYHKVCQDYSEFYKNALLYLAYTTVESLSEPFKQNLAFDLS----LAA 641 ++ + L ++ S+ Y+ L+ TV + P K+ + + LS LA Sbjct: 221 ALFNTENHTLTYMTFEIVLMVSDMYEGRHNILSLCTVSTYLNPLKKRITYLLSLVDNLAF 280 Query: 642 LLGDNIYN 665 +GD +YN Sbjct: 281 QIGDAVYN 288
>YBA4_YEAST (P35194) Hypothetical 287.5 kDa protein in PDR3-HTA2 intergenic| region Length = 2493 Score = 30.8 bits (68), Expect = 3.8 Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 5/128 (3%) Frame = +3 Query: 291 ISYLEGVISKLHDTKESRIEEPVLYVKMQIASFLLEKGNQKECKKLVDEGKTTLDSMDDV 470 +S+LEG I L D+ S E V+ ++I L+ E ++ + ++ V Sbjct: 1889 VSHLEGFIPFLRDSLLSE-NEGVVISTLRILITLIRLDFSDESSEIFKNCARKVLNIIKV 1947 Query: 471 DPSVHSTYYWLCSQYHKVCQDY-----SEFYKNALLYLAYTTVESLSEPFKQNLAFDLSL 635 PS S LC K + S AL Y+ + L+EP +Q LAF+ L Sbjct: 1948 SPSTSSE---LCQMGLKFLSAFIRHTDSTLKDTALSYVLGRVLPDLNEPSRQGLAFNF-L 2003 Query: 636 AALLGDNI 659 AL+ +I Sbjct: 2004 KALVSKHI 2011
>FZOL_SCHPO (Q9USY7) Transmembrane GTPase fzo-like protein (EC 3.6.5.-)| Length = 758 Score = 30.4 bits (67), Expect = 5.0 Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 8/101 (7%) Frame = +3 Query: 102 RKLWH--QLTLKLDQFLALAVVQAGDALIQLYTHFISDFESKINLL------KFAHFAVV 257 RK+ H Q T + ++ L A VQ+ I +TH S+ E I+ L K++ F Sbjct: 447 RKVKHEQQFTYQKNESLVEATVQS----ISQHTH--SELEDAIDSLGSFASVKYSGFFFA 500 Query: 258 VSRQYSDKDAGISYLEGVISKLHDTKESRIEEPVLYVKMQI 380 S +DA YLE + + D R EE VL ++ + Sbjct: 501 YQYAISVRDAMQQYLEEKLLESEDYARKRTEEAVLCIQKDV 541
>RAD50_METKA (Q8TXI4) DNA double-strand break repair rad50 ATPase| Length = 876 Score = 30.4 bits (67), Expect = 5.0 Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 11/168 (6%) Frame = +3 Query: 12 GRRRWXFLEAQGSTRPELAEWYAALADLYQRKLWHQLTLKLDQFL-----ALAVVQAGDA 176 G R F EA + E+A+ A + +RK TL L +F A +++ +A Sbjct: 125 GVDRDVFREAVYIRQGEIAKLVEATRE--ERKRIVDRTLGLAEFKKAREQAHELLRVAEA 182 Query: 177 LIQLYTHFISDFE-SKINLLKFAHFAVVVSRQYSDKDAGISYLEGVISKLHDTKES--RI 347 ++ + + D + SK L + + R+ + + + L+ +++L + K R+ Sbjct: 183 KLETFRERVRDLKGSKKELKRVERELEELKREVKELEPEVEELKERLNELREAKREFERL 242 Query: 348 EEPVLYVKMQIASFLLEKGNQKECKKLVDEGKTT---LDSMDDVDPSV 482 E + ++ +I S KG + + +KLV+EGK L + DV V Sbjct: 243 EGELRLLENKIESL---KGRRDDLRKLVEEGKEAERELQRLGDVPSKV 287
>FN3X_ARATH (Q9LEW8) Hypothetical 35.5 kDa protein At3g61080| Length = 318 Score = 30.0 bits (66), Expect = 6.6 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = +3 Query: 45 GSTRPELAEWYAALADLY-QRKLWHQLTLKLDQFLALAVVQAGDALIQ 185 GST P++ W + + Y +++L +QL L DQ+ A+ Q G LIQ Sbjct: 159 GST-PQINTWSSDWIEFYGEKRLGYQLKLARDQYGDSAIYQKGHTLIQ 205
>YPIA_BACSU (P54389) Hypothetical protein ypiA| Length = 423 Score = 29.6 bits (65), Expect = 8.6 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 11/111 (9%) Frame = +3 Query: 132 LDQFLAL--AVVQAGDALIQLYTHFISDFESKINLLKFAHFAVVVSRQYSDKDAGIS-YL 302 L + LAL V+A L+ +Y H D++ I+L++ R Y ++D + YL Sbjct: 295 LQEALALDPGFVEALHTLLAVY-HKEEDYDQIIDLIQEV-------RSYGEEDPKYNWYL 346 Query: 303 EGVISKLHDTKESRIEEPVLYVKM--------QIASFLLEKGNQKECKKLV 431 ++L +E++ Y+ + ASFLLE+G QKE L+ Sbjct: 347 ASAYTELEQYEEAKQSFEAAYLHYREDRDFLYEYASFLLEEGLQKEALPLL 397
>Y3379_CLOAB (Q97DU2) Putative nucleotidase CAC3379 (EC 3.1.3.-)| Length = 192 Score = 29.6 bits (65), Expect = 8.6 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 5/56 (8%) Frame = +3 Query: 465 DVDPSVHSTYYW--LCSQYHKVC---QDYSEFYKNALLYLAYTTVESLSEPFKQNL 617 D+D ++ YYW LC+ Y K +D +++Y + +L + E +K L Sbjct: 9 DIDGTITDAYYWIDLCNSYFKTSITEKDATQYYIHKILNVPLEEYNEFYEKYKYKL 64 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,626,733 Number of Sequences: 219361 Number of extensions: 1583551 Number of successful extensions: 5544 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 5324 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5536 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6484657212 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
