ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd14b24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009095.1| Triticum aestivum clone wkm2c.pk005.e4:fis, full ... 615 e-173
2gb|AF264021.1| Poa secunda putative thiamine biosythesis protein... 143 7e-31
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 137 4e-29
4gb|AC084406.7|AC084406 Oryza sativa chromosome 3 BAC OSJNBa0067E... 137 4e-29
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 137 4e-29
6dbj|AK120238.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 4e-29
7dbj|AK068703.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 4e-29
8dbj|AK065235.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 4e-29
9ref|NM_179804.2| Arabidopsis thaliana catalytic AT2G29630 transc... 96 1e-16
10gb|AC005496.3| Arabidopsis thaliana chromosome 2 clone T27A16 ma... 96 1e-16
11gb|AE013167.1| Thermoanaerobacter tengcongensis MB4, section 194... 50 0.008
12gb|AE013127.1| Thermoanaerobacter tengcongensis MB4, section 154... 50 0.008
13gb|AE013112.1| Thermoanaerobacter tengcongensis MB4, section 139... 50 0.008
14dbj|D13323.1|STRREPRESP Streptococcus sobrinus par and pag genes... 50 0.008
15gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 48 0.031
16gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 44 0.48
17gb|AY543013.1| Bigelowiella natans folate receptor mRNA, complet... 44 0.48
18gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 44 0.48
19gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 44 0.48
20gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 44 0.48
21emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 44 0.48
22gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 44 0.48
23gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 42 1.9
24gb|AE004097.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom... 42 1.9
25emb|CR378663.1| Photobacterium profundum SS9; segment 1/12 42 1.9
26gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome 42 1.9
27gb|AC116075.5| Rattus norvegicus 6 BAC CH230-139H23 (Children's ... 40 7.5
28gb|AC131596.10| Mus musculus chromosome 10, clone RP23-476G10, c... 40 7.5
29gb|AC102647.8| Mus musculus chromosome 10, clone RP23-269A24, co... 40 7.5
30gb|AC137078.24| Medicago truncatula clone mth2-10e12, complete s... 40 7.5
31emb|AL928717.5| Human DNA sequence from clone RP11-363G10 on chr... 40 7.5
32emb|AL772193.5| Zebrafish DNA sequence from clone CH211-194C5 in... 40 7.5
33emb|BX546500.7| Zebrafish DNA sequence from clone DKEY-15L19 in ... 40 7.5
34gb|AC183493.1| Brassica oleracea Contig B, complete sequence 40 7.5
35gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare str... 40 7.5
36gb|AC153823.5| Mus musculus 10 BAC RP23-11M21 (Roswell Park Canc... 40 7.5
37gb|AC157504.2| Medicago truncatula chromosome 2 BAC clone mte1-6... 40 7.5
38gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 7.5
39ref|NM_064567.2| Caenorhabditis elegans Y48B6A.12 (Y48B6A.12) mR... 40 7.5
40gb|AC142116.2| Homo sapiens BAC clone RP11-1288H11 from 2, compl... 40 7.5
41gb|AC107301.10| Homo sapiens 3 BAC RP11-544A22 (Roswell Park Can... 40 7.5
42ref|XM_234514.3| PREDICTED: Rattus norvegicus B-cell leukemia/ly... 40 7.5
43dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge... 40 7.5
44emb|AL807744.7| Mouse DNA sequence from clone RP23-174C4 on chro... 40 7.5
45emb|BX470085.6| Zebrafish DNA sequence from clone DKEY-238K17 in... 40 7.5
46gb|AC007225.2|AC007225 Homo sapiens chromosome 16 clone RPCI-11_... 40 7.5
47emb|AL110490.1|CEY48B6A Caenorhabditis elegans YAC Y48B6A, compl... 40 7.5
48emb|AL773539.18| Mouse DNA sequence from clone RP23-9F18 on chro... 40 7.5
49emb|AL626783.16| Mouse DNA sequence from clone RP23-406B13 on ch... 40 7.5
50emb|AL118555.6|CNS01DRS Human chromosome 14 DNA sequence BAC C-2... 40 7.5
51emb|AL731713.8| Mouse DNA sequence from clone RP23-32L9 on chrom... 40 7.5 
>gb|BT009095.1| Triticum aestivum clone wkm2c.pk005.e4:fis, full insert mRNA sequence
          Length = 2406

 Score =  615 bits (310), Expect = e-173
 Identities = 352/366 (96%)
 Strand = Plus / Plus

                                                                        
Query: 13   ctggatcgttgcgatatgggctgagaaagtccctttgaacctgaacaggataatgcctgc 72
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1829 ctggattgttgcgatatgggctgagaaagtccctttgaacctgaacaggataatgcctgc 1888

                                                                        
Query: 73   gaagggagtgtgcatttctattttcatgtttcccaggatacattcaaccctcgacattct 132
            ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1889 gaagggagtgtgcatttttattttcatgtttcccaggatacactcaaccctcgacattct 1948

                                                                        
Query: 133  gggaatcgagggaccaagttttcctgaatgtgtggagcgcacccactggatatgcatgtt 192
            || |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 1949 ggaaatcgagggaccaagttttcctgaatgtgtggagcgcatctactggatatgcatgtt 2008

                                                                        
Query: 193  tccttctctgacgcaacatggtaatgtacacgatttcttgaaccagcatacatattggca 252
            |||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2009 tcctactctgaagtaacatggtaatgtacacgatttcttgaaccagcatacatattggta 2068

                                                                        
Query: 253  tttctccaagaggagagaatatttacagtcatagtgttatcatggaacacataaaattta 312
            |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 2069 tttctccaagaggagagaatatttacaggcatagtgttaccatggaacacataaaattta 2128

                                                                        
Query: 313  gtcatcatggaacacataaaatttagtcatacgtgtggctagtttagtccaacttcataa 372
            |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2129 gtcaacatggaacacataaaatttagtcatacgtgtggctagtttagtcaaacttcataa 2188

                  
Query: 373  gcccat 378
            ||||||
Sbjct: 2189 gcccat 2194



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 75/83 (90%), Gaps = 2/83 (2%)
 Strand = Plus / Plus

                                                                        
Query: 392  gaggaatcccattacatcttgcaaagcattcacaatgcccggtgtaattttaccttttta 451
            ||||||||||||||||||| ||||||||||||||||| || |||||||||   |||||||
Sbjct: 2204 gaggaatcccattacatctcgcaaagcattcacaatgtcctgtgtaattt--acttttta 2261

                                   
Query: 452  cccctatccatgtacatatttct 474
            | ||||||| |||||||||||||
Sbjct: 2262 cacctatccttgtacatatttct 2284
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>gb|AF264021.1| Poa secunda putative thiamine biosythesis protein ThiC mRNA, complete
            cds
          Length = 2387

 Score =  143 bits (72), Expect = 7e-31
 Identities = 81/84 (96%)
 Strand = Plus / Plus

                                                                        
Query: 13   ctggatcgttgcgatatgggctgagaaagtccctttgaacctgaacaggataatgcctgc 72
            |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2276 ctggattgttgtgatatgggctgagaaagtccctttgaacctgaacaggataatgcctgc 2335

                                    
Query: 73   gaagggagtgtgcatttctatttt 96
            | ||||||||||||||||||||||
Sbjct: 2336 gtagggagtgtgcatttctatttt 2359
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  137 bits (69), Expect = 4e-29
 Identities = 75/77 (97%)
 Strand = Plus / Plus

                                                                            
Query: 29       tgggctgagaaagtccctttgaacctgaacaggataatgcctgcgaagggagtgtgcatt 88
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26666472 tgggctgagaaagtccctttgaacctgaacaggataatgcctgcgaagggagtgtgcatt 26666531

                                 
Query: 89       tctattttcatgtttcc 105
                |||| ||| ||||||||
Sbjct: 26666532 tctacttttatgtttcc 26666548



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 85      catttctattttcatgtttc 104
               ||||||||||||||||||||
Sbjct: 9363190 catttctattttcatgtttc 9363171
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>gb|AC084406.7|AC084406 Oryza sativa chromosome 3 BAC OSJNBa0067E01 genomic sequence, complete
             sequence
          Length = 140044

 Score =  137 bits (69), Expect = 4e-29
 Identities = 75/77 (97%)
 Strand = Plus / Minus

                                                                         
Query: 29    tgggctgagaaagtccctttgaacctgaacaggataatgcctgcgaagggagtgtgcatt 88
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91368 tgggctgagaaagtccctttgaacctgaacaggataatgcctgcgaagggagtgtgcatt 91309

                              
Query: 89    tctattttcatgtttcc 105
             |||| ||| ||||||||
Sbjct: 91308 tctacttttatgtttcc 91292
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  137 bits (69), Expect = 4e-29
 Identities = 75/77 (97%)
 Strand = Plus / Plus

                                                                            
Query: 29       tgggctgagaaagtccctttgaacctgaacaggataatgcctgcgaagggagtgtgcatt 88
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26757795 tgggctgagaaagtccctttgaacctgaacaggataatgcctgcgaagggagtgtgcatt 26757854

                                 
Query: 89       tctattttcatgtttcc 105
                |||| ||| ||||||||
Sbjct: 26757855 tctacttttatgtttcc 26757871



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 85      catttctattttcatgtttc 104
               ||||||||||||||||||||
Sbjct: 9361311 catttctattttcatgtttc 9361292
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>dbj|AK120238.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044A21, full
            insert sequence
          Length = 3285

 Score =  137 bits (69), Expect = 4e-29
 Identities = 75/77 (97%)
 Strand = Plus / Plus

                                                                        
Query: 29   tgggctgagaaagtccctttgaacctgaacaggataatgcctgcgaagggagtgtgcatt 88
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2116 tgggctgagaaagtccctttgaacctgaacaggataatgcctgcgaagggagtgtgcatt 2175

                             
Query: 89   tctattttcatgtttcc 105
            |||| ||| ||||||||
Sbjct: 2176 tctacttttatgtttcc 2192
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>dbj|AK068703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159A12, full
            insert sequence
          Length = 3033

 Score =  137 bits (69), Expect = 4e-29
 Identities = 75/77 (97%)
 Strand = Plus / Plus

                                                                        
Query: 29   tgggctgagaaagtccctttgaacctgaacaggataatgcctgcgaagggagtgtgcatt 88
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2149 tgggctgagaaagtccctttgaacctgaacaggataatgcctgcgaagggagtgtgcatt 2208

                             
Query: 89   tctattttcatgtttcc 105
            |||| ||| ||||||||
Sbjct: 2209 tctacttttatgtttcc 2225
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>dbj|AK065235.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002H20, full
            insert sequence
          Length = 3301

 Score =  137 bits (69), Expect = 4e-29
 Identities = 75/77 (97%)
 Strand = Plus / Plus

                                                                        
Query: 29   tgggctgagaaagtccctttgaacctgaacaggataatgcctgcgaagggagtgtgcatt 88
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2155 tgggctgagaaagtccctttgaacctgaacaggataatgcctgcgaagggagtgtgcatt 2214

                             
Query: 89   tctattttcatgtttcc 105
            |||| ||| ||||||||
Sbjct: 2215 tctacttttatgtttcc 2231
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>ref|NM_179804.2| Arabidopsis thaliana catalytic AT2G29630 transcript variant
            AT2G29630.2 mRNA, complete cds
          Length = 2435

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 54/56 (96%)
 Strand = Plus / Plus

                                                                    
Query: 31   ggctgagaaagtccctttgaacctgaacaggataatgcctgcgaagggagtgtgca 86
            ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 2160 ggctgagaaagtccctttgaacctgaacagggtaatgcctgcgcagggagtgtgca 2215
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>gb|AC005496.3| Arabidopsis thaliana chromosome 2 clone T27A16 map mi54, complete
             sequence
          Length = 90665

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 54/56 (96%)
 Strand = Plus / Minus

                                                                     
Query: 31    ggctgagaaagtccctttgaacctgaacaggataatgcctgcgaagggagtgtgca 86
             ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 78564 ggctgagaaagtccctttgaacctgaacagggtaatgcctgcgcagggagtgtgca 78509
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>gb|AE013167.1| Thermoanaerobacter tengcongensis MB4, section 194 of 244 of the
             complete genome
          Length = 14498

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                  
Query: 43    ccctttgaacctgaacaggataatgcctgcgaaggga 79
             ||||| |||||||| |||| |||||||||||||||||
Sbjct: 14359 cccttagaacctgaccagggtaatgcctgcgaaggga 14323
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>gb|AE013127.1| Thermoanaerobacter tengcongensis MB4, section 154 of 244 of the
            complete genome
          Length = 10370

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                 
Query: 43   ccctttgaacctgaacaggataatgcctgcgaaggga 79
            ||||| |||||||| |||| |||||||||||||||||
Sbjct: 3242 cccttagaacctgaccagggtaatgcctgcgaaggga 3206
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>gb|AE013112.1| Thermoanaerobacter tengcongensis MB4, section 139 of 244 of the
            complete genome
          Length = 11948

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                 
Query: 43   ccctttgaacctgaacaggataatgcctgcgaaggga 79
            ||||| |||||||| |||| |||||||||||||||||
Sbjct: 9309 cccttagaacctgaccagggtaatgcctgcgaaggga 9273
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>dbj|D13323.1|STRREPRESP Streptococcus sobrinus par and pag genes for repressor protein and
            surface protein antigen PAg, complete and partial cds
          Length = 2853

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 45   ctttgaacctgaacaggataatgcctgcg 73
            ||||||||||||||||| |||||||||||
Sbjct: 2572 ctttgaacctgaacagggtaatgcctgcg 2544
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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 33      ctgagaaagtccctttgaacctga 56
               ||||||||||||||||||||||||
Sbjct: 2711013 ctgagaaagtccctttgaacctga 2711036
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                             
Query: 34      tgagaaagtccctttgaacctgaacaggataatgcctgcgaaggga 79
               |||||||  |||||||||||||| | |||||||||| ||| |||||
Sbjct: 1285217 tgagaaataccctttgaacctgatctggataatgccagcgcaggga 1285172
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>gb|AY543013.1| Bigelowiella natans folate receptor mRNA, complete cds
          Length = 1529

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                              
Query: 46   tttgaacctgaacaggataatgcctgcgaaggga 79
            ||||||||||| |||| |||| ||||||||||||
Sbjct: 1140 tttgaacctgatcagggtaattcctgcgaaggga 1173
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                             
Query: 34      tgagaaagtccctttgaacctgaacaggataatgcctgcgaaggga 79
               |||||||  |||||||||||||| | |||||||||| ||| |||||
Sbjct: 3183798 tgagaaataccctttgaacctgatctggataatgccagcgcaggga 3183843
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                             
Query: 34      tgagaaagtccctttgaacctgaacaggataatgcctgcgaaggga 79
               |||||||  |||||||||||||| | |||||||||| ||| |||||
Sbjct: 1617038 tgagaaataccctttgaacctgatctggataatgccagcgcaggga 1616993
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                             
Query: 34      tgagaaagtccctttgaacctgaacaggataatgcctgcgaaggga 79
               |||||||  |||||||||||||| | |||||||||| ||| |||||
Sbjct: 3314046 tgagaaataccctttgaacctgatctggataatgccagcgcaggga 3314091
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                             
Query: 34      tgagaaagtccctttgaacctgaacaggataatgcctgcgaaggga 79
               |||||||  |||||||||||||| | |||||||||| ||| |||||
Sbjct: 1504180 tgagaaataccctttgaacctgatctggataatgccagcgcaggga 1504135
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                             
Query: 34      tgagaaagtccctttgaacctgaacaggataatgcctgcgaaggga 79
               |||||||  |||||||||||||| | |||||||||| ||| |||||
Sbjct: 3261259 tgagaaataccctttgaacctgatctggataatgccagcgcaggga 3261304
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                    
Query: 43      ccctttgaacctgaacaggataatgcctgcgaaggga 79
               |||||||||||||| | |||||||||| ||| |||||
Sbjct: 3319645 ccctttgaacctgatccggataatgccggcgtaggga 3319681
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>gb|AE004097.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 5
            of 251 of the complete chromosome
          Length = 10632

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                             
Query: 47   ttgaacctgaacaggataatgcctgcgaaggga 79
            |||||||||| |||| |||| ||||||||||||
Sbjct: 4229 ttgaacctgatcaggttaatacctgcgaaggga 4261
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>emb|CR378663.1| Photobacterium profundum SS9; segment 1/12
          Length = 348044

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 47     ttgaacctgaacaggataatgcctgcgaaggga 79
              |||||||||| |||| |||| ||||||||||||
Sbjct: 106668 ttgaacctgatcaggctaatacctgcgaaggga 106700
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>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome
          Length = 2839318

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 47     ttgaacctgaacaggataatgcctgcgaaggga 79
              |||||||||| |||| |||| ||||||||||||
Sbjct: 821588 ttgaacctgatcaggctaatacctgcgaaggga 821620
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>gb|AC116075.5| Rattus norvegicus 6 BAC CH230-139H23 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 153441

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 523    acatgccacttgtcatttcagaac 546
              ||||||||||| ||||||||||||
Sbjct: 120922 acatgccacttttcatttcagaac 120899
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>gb|AC131596.10| Mus musculus chromosome 10, clone RP23-476G10, complete sequence
          Length = 178668

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 86     atttctattttcatgtttcc 105
              ||||||||||||||||||||
Sbjct: 117259 atttctattttcatgtttcc 117278
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>gb|AC102647.8| Mus musculus chromosome 10, clone RP23-269A24, complete sequence
          Length = 201670

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 496   ctagactaacagattggaat 515
             ||||||||||||||||||||
Sbjct: 11852 ctagactaacagattggaat 11833
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>gb|AC137078.24| Medicago truncatula clone mth2-10e12, complete sequence
          Length = 144306

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 438   attttacctttttaccccta 457
             ||||||||||||||||||||
Sbjct: 60471 attttacctttttaccccta 60452
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>emb|AL928717.5| Human DNA sequence from clone RP11-363G10 on chromosome X Contains the
              gene for family D 4 melanoma antigen (MAGED4) (KIAA1859,
              DKFZp761N1924, FLJ37222, FLJ25964), gene LOC349420
              (FLJ39060) and a CpG island, complete sequence
          Length = 186278

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 470    tttctgtagcatagtagaagatgt 493
              ||||||||||| ||||||||||||
Sbjct: 158793 tttctgtagcacagtagaagatgt 158770
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>emb|AL772193.5| Zebrafish DNA sequence from clone CH211-194C5 in linkage group 7
             Contains a novel gene similar to PPP1R14B (protein
             phosphatase 1, regulatory (inhibitor) subunit 14B), a
             novel gene similar to BRMS1 (breast cancer
             metastasis-suppressor 1 (BRMS1), the pc gene for pyruvate
             carboxylase and three putative novel retrotransposons,
             complete sequence
          Length = 192531

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 276   tacagtcatagtgttatcat 295
             ||||||||||||||||||||
Sbjct: 77920 tacagtcatagtgttatcat 77939
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>emb|BX546500.7| Zebrafish DNA sequence from clone DKEY-15L19 in linkage group 23,
              complete sequence
          Length = 237446

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 234    accagcatacatattggcatttct 257
              ||||||||||||| ||||||||||
Sbjct: 106572 accagcatacatagtggcatttct 106595
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>gb|AC183493.1| Brassica oleracea Contig B, complete sequence
          Length = 284024

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 439   ttttacctttttacccctat 458
             ||||||||||||||||||||
Sbjct: 78818 ttttacctttttacccctat 78799
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>gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0002D01, from chromosome 3, complete sequence
          Length = 187589

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    catttctattttcatgtttc 104
             ||||||||||||||||||||
Sbjct: 60590 catttctattttcatgtttc 60571
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>gb|AC153823.5| Mus musculus 10 BAC RP23-11M21 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 210101

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 496    ctagactaacagattggaat 515
              ||||||||||||||||||||
Sbjct: 112376 ctagactaacagattggaat 112357
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>gb|AC157504.2| Medicago truncatula chromosome 2 BAC clone mte1-65n19, complete
             sequence
          Length = 106635

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 301   acataaaatttagtcatcat 320
             ||||||||||||||||||||
Sbjct: 63854 acataaaatttagtcatcat 63873
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 244     atattggcatttctccaaga 263
               ||||||||||||||||||||
Sbjct: 3391949 atattggcatttctccaaga 3391930
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>ref|NM_064567.2| Caenorhabditis elegans Y48B6A.12 (Y48B6A.12) mRNA, complete cds
          Length = 2232

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 438  attttacctttttaccccta 457
            ||||||||||||||||||||
Sbjct: 2135 attttacctttttaccccta 2154
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>gb|AC142116.2| Homo sapiens BAC clone RP11-1288H11 from 2, complete sequence
          Length = 21376

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 146   ccaagttttcctgaatgtgt 165
             ||||||||||||||||||||
Sbjct: 13178 ccaagttttcctgaatgtgt 13159
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>gb|AC107301.10| Homo sapiens 3 BAC RP11-544A22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 188000

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   aagaggagagaatatttaca 279
             ||||||||||||||||||||
Sbjct: 39878 aagaggagagaatatttaca 39859
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>ref|XM_234514.3| PREDICTED: Rattus norvegicus B-cell leukemia/lymphoma 11B (predicted)
            (Bcl11b_predicted), mRNA
          Length = 5714

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 523  acatgccacttgtcatttcagaac 546
            ||||||||||| ||||||||||||
Sbjct: 3451 acatgccacttttcatttcagaac 3428
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>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 47      ttgaacctgaacaggataat 66
               ||||||||||||||||||||
Sbjct: 1440429 ttgaacctgaacaggataat 1440448
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>emb|AL807744.7| Mouse DNA sequence from clone RP23-174C4 on chromosome X, complete
             sequence
          Length = 163576

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 96    tcatgtttcccaggatacattcaa 119
             |||||||||||||| |||||||||
Sbjct: 11051 tcatgtttcccaggctacattcaa 11074
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>emb|BX470085.6| Zebrafish DNA sequence from clone DKEY-238K17 in linkage group 20,
             complete sequence
          Length = 107263

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 276   tacagtcatagtgttatcat 295
             ||||||||||||||||||||
Sbjct: 78053 tacagtcatagtgttatcat 78034
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>gb|AC007225.2|AC007225 Homo sapiens chromosome 16 clone RPCI-11_480G7, complete sequence
          Length = 218892

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 268    agaatatttacagtcatagt 287
              ||||||||||||||||||||
Sbjct: 129246 agaatatttacagtcatagt 129227
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>emb|AL110490.1|CEY48B6A Caenorhabditis elegans YAC Y48B6A, complete sequence
          Length = 101295

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 438   attttacctttttaccccta 457
             ||||||||||||||||||||
Sbjct: 76153 attttacctttttaccccta 76134
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>emb|AL773539.18| Mouse DNA sequence from clone RP23-9F18 on chromosome 4, complete
              sequence
          Length = 182206

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     gtgcatttctattttcatgt 101
              ||||||||||||||||||||
Sbjct: 175010 gtgcatttctattttcatgt 174991
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>emb|AL626783.16| Mouse DNA sequence from clone RP23-406B13 on chromosome 4, complete
             sequence
          Length = 179370

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 432   ggtgtaattttaccttttta 451
             ||||||||||||||||||||
Sbjct: 70029 ggtgtaattttaccttttta 70010
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>emb|AL118555.6|CNS01DRS Human chromosome 14 DNA sequence BAC C-2011M8 of library CalTech-D from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 122552

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 266   agagaatatttacagtcata 285
             ||||||||||||||||||||
Sbjct: 67371 agagaatatttacagtcata 67390
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>emb|AL731713.8| Mouse DNA sequence from clone RP23-32L9 on chromosome 2, complete
             sequence
          Length = 219076

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    tttctattttcatgtttccc 106
             ||||||||||||||||||||
Sbjct: 16446 tttctattttcatgtttccc 16465


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,368,035
Number of Sequences: 3902068
Number of extensions: 5368035
Number of successful extensions: 101082
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100806
Number of HSP's gapped (non-prelim): 273
length of query: 556
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 533
effective length of database: 17,143,297,704
effective search space: 9137377676232
effective search space used: 9137377676232
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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