ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd13m24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SLAF1_CANFA (Q95MM9) Signaling lymphocytic activation molecule p... 36 0.066
2MCP_HUMAN (P15529) Membrane cofactor protein precursor (Trophobl... 30 3.6
3LAMA_DROME (Q00174) Laminin alpha chain precursor 30 3.6

>SLAF1_CANFA (Q95MM9) Signaling lymphocytic activation molecule precursor (CD150|
           antigen homolog)
          Length = 342

 Score = 36.2 bits (82), Expect = 0.066
 Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
 Frame = +3

Query: 441 ESSVPH-WAIYA-LCISGALGLVVIASIVYLLLSRRKKDNTVIP 566
           ESSVP  W +YA L + G +G+++I  +V LLL RR K N   P
Sbjct: 231 ESSVPRQWRLYAGLFLGGIVGVILIFEVVLLLLRRRGKTNHYKP 274



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>MCP_HUMAN (P15529) Membrane cofactor protein precursor (Trophoblast leukocyte|
           common antigen) (TLX) (CD46 antigen)
          Length = 392

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 420 YSQPETNE-SSVPHWAIYALCISGALGLVVIASIVYLLLSRRKKDNTVI 563
           Y +PE     S+  W I  + I+  +G+ VI  + Y  L RRKK  T +
Sbjct: 331 YPKPEEGILDSLDVWVIAVIVIAIVVGVAVICVVPYRYLQRRKKKGTYL 379



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>LAMA_DROME (Q00174) Laminin alpha chain precursor|
          Length = 3712

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +3

Query: 120  MSFRQERPSGSLWNLGEKKAFGAAATSLVKGNPSTEI--PNELQERIMISEVLTDG 281
            +SFR ERP+G L   G K+     A  L+ G  + EI    +LQ +I     L DG
Sbjct: 3377 ISFRTERPNGLLIYAGSKQRDDFIAVYLLDGRVTYEIRVGAQLQAKITTEAELNDG 3432


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,799,254
Number of Sequences: 219361
Number of extensions: 1497829
Number of successful extensions: 3698
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3695
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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