>YPGQ_BACSU (P54168) Hypothetical protein ypgQ|
          Length = 205

 Score = 96.7 bits (239), Expect = 6e-20
 Identities = 64/192 (33%), Positives = 97/192 (50%)
 Frame = +2

Query: 92  VEREMSGRDASHDAAHALRVRDLALSLAAEQGVSSPDRLLIVELAALLHDIGDYKYTKDN 271
           V+  ++   + HD  H  RV DLA  +  ++       L IVE AAL+HD+ D K     
Sbjct: 14  VQSILTDESSGHDWHHVSRVADLAAYIGEKEKAD----LFIVETAALVHDLIDVKLPDTV 69

Query: 272 AEDMSIVKRFLGEVGLEEGQKEEIVAIITGMGFKNEVSKKLNAETTLEFAIVQDADRLDA 451
              +S V   L   G+ +   + ++ IIT M F++   K      ++E   VQDADRLDA
Sbjct: 70  RLSVSEVYDQLVFFGVGKENADRVIHIITRMSFRDR-GKLAKEPLSIEGKAVQDADRLDA 128

Query: 452 IGAIGVARCFTYGGSKNSALHDPNVLPRDNLSKEKYMSKEEKQTSINHFHEKLFKLKDMM 631
           IGA+G+AR F + G+K   L+                   ++Q++  HF  KL +LKDMM
Sbjct: 129 IGAVGIARAFMFAGAKGHGLYG------------------DEQSAYAHFFHKLLRLKDMM 170

Query: 632 KTEAGKKRAEKR 667
            T+  ++ AE+R
Sbjct: 171 NTDTARELAEER 182

>YEDJ_ECOLI (P46144) Hypothetical protein yedJ|
          Length = 231

 Score = 79.3 bits (194), Expect = 9e-15
 Identities = 65/201 (32%), Positives = 98/201 (48%), Gaps = 8/201 (3%)
 Frame = +2

Query: 83  EELVEREMSGRDASHDAAHALRVRDLALSLAAEQGVSSPDRLLIVELAALLHDIGDYKYT 262
           E  ++     +DA+HD  H  RV   A  LAA+  V     +L++  A   HDI      
Sbjct: 11  ENWLKNHHQHQDAAHDVCHFRRVWATAQKLAADDDVD----MLVILTACYFHDIVSLAKN 66

Query: 263 KDNAEDMSIV-----KRFLGEVGLEEGQKEEIVAI---ITGMGFKNEVSKKLNAETTLEF 418
               +  SI+     +R L E   E+   E+I A+   I    F  ++     A  T E 
Sbjct: 67  HPQRQRSSILAAEETRRLLREE-FEQFPAEKIEAVCHAIAAHSFSAQI-----APLTTEA 120

Query: 419 AIVQDADRLDAIGAIGVARCFTYGGSKNSALHDPNVLPRDNLSKEKYMSKEEKQTSINHF 598
            IVQDADRL+A+GAIG+AR F   G+   AL D      D  ++ + +  ++K+ +++HF
Sbjct: 121 KIVQDADRLEALGAIGLARVFAVSGALGVALFD----GEDPFAQHRPL--DDKRYALDHF 174

Query: 599 HEKLFKLKDMMKTEAGKKRAE 661
             KL KL   M+T  GK+ A+
Sbjct: 175 QTKLLKLPQTMQTARGKQLAQ 195

>YL803_MIMIV (Q5UR59) Hypothetical protein L803|
          Length = 243

 Score = 60.1 bits (144), Expect = 6e-09
 Identities = 58/206 (28%), Positives = 96/206 (46%), Gaps = 23/206 (11%)
 Frame = +2

Query: 71  VRCAEELVERE-MSGRD-ASHDAAHALRVRDLALSLAAEQGVSSPDRLLIVELAALLHDI 244
           +R   EL  RE MS  + A HD  H + VR+ A+     + +S+  +L  VE AA+LHD+
Sbjct: 8   LRNLTELTVREFMSNHNVAGHDVDHFIAVRNHAIKALKYENISNSKKLQ-VEFAAMLHDV 66

Query: 245 GDYKYTKDNAEDMSIVKRFLGEVGLEEGQKEEIVAIITGMGFKNE-------VSKKLNAE 403
            D K    + +  +   +++ +    +   E I++  T   FK         VS   N +
Sbjct: 67  DDPKIFSQSIDYQNA--KYILDTIFTKMSFENIISDCTYDVFKQGIVTLISLVSCSKNGD 124

Query: 404 TTLE---FAIVQDADRLDAIGAIGVARCFTYGGSKNSALHDPNVLPRDNLSKE------- 553
             +E    AI +DADRL+AIG IG+ RC  Y        +  +  PR   S+E       
Sbjct: 125 DGVEESWMAIPRDADRLEAIGKIGIQRCTDYANHIKLPYYLDST-PRAKTSEEALSFANR 183

Query: 554 ----KYMSKEEKQTSINHFHEKLFKL 619
               +Y +  +  + I+H+++KL  +
Sbjct: 184 DRFDRYKNGHKSVSMIDHYYDKLLHI 209

>PGK_HAEDU (Q7VMV0) Phosphoglycerate kinase (EC 2.7.2.3)|
          Length = 391

 Score = 35.4 bits (80), Expect = 0.16
 Identities = 28/93 (30%), Positives = 43/93 (46%)
 Frame = +2

Query: 212 IVELAALLHDIGDYKYTKDNAEDMSIVKRFLGEVGLEEGQKEEIVAIITGMGFKNEVSKK 391
           + E A  L  + DY    D    + +V+ +L   G+E  Q E +V     +   N+  KK
Sbjct: 67  VFEEANSLQPVVDYLNASDLGVPVRLVRDYLD--GVEVNQNEIVVLENVRI---NKGEKK 121

Query: 392 LNAETTLEFAIVQDADRLDAIGAIGVARCFTYG 490
            +AE   ++A + D   +DA G    A C TYG
Sbjct: 122 NDAELAKKYAALCDIFVMDAFGTAHRAECSTYG 154

>RP1_CANFA (Q8MJ04) Oxygen-regulated protein 1 (Retinitis pigmentosa RP1 protein|
            homolog)
          Length = 2141

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
 Frame = +2

Query: 248  DYKYTKDNAEDMSIVKRFL------GEVGLEEGQKEEIVAIITGMGFKNEVSKKLNAETT 409
            D++Y K+N ED ++   F        +    +GQ E     + G+  KN VSK  N+  T
Sbjct: 805  DFRYCKNNFEDQNLFPMFNFLEQRPSDFCGPQGQAEIASWYLGGITKKNLVSKVNNSHIT 864

Query: 410  LEFAIVQDADRLDAIGAIGVARCFTYGGSKNS 505
            L+    Q  D+L +   +   +  T   S  S
Sbjct: 865  LKTQKKQKGDKLKSSTTVSKQQVTTRANSLGS 896

>HRP_PLABE (Q08168) 58 kDa phosphoprotein (Heat shock-related protein) (HRP)|
          Length = 423

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 49/186 (26%), Positives = 75/186 (40%), Gaps = 19/186 (10%)
 Frame = +2

Query: 164 LSLAAEQGVSSPDRLLIVELAALLHDIGDYKYTKDNAEDMSIVKRFLGEVGLEEGQKEEI 343
           L L  E+ V  P    I+E       I +    K+ A D+   K++  E  LE+  K   
Sbjct: 84  LELIKEEAVECPPLAPIIEGELSEEQIEEICKLKEEAVDLVENKKY--EEALEKYNKIIS 141

Query: 344 VAIITGMGFKNEVSKKLNAETTLEFAIVQDADR-----LDAIGAIGV-ARCFTYGGSKNS 505
               + M +    S  LN +     A ++D        +D+  A  + A+ + Y G    
Sbjct: 142 FGNPSAMIYTKRASILLNLKRPK--ACIRDCTEALNLNVDSANAYKIRAKAYRYLGKWEF 199

Query: 506 AL----------HDPNVLPRDNLSKEKYMSKEEKQT-SINHFHEK--LFKLKDMMKTEAG 646
           A           +D N+     L +EKY    EK+   IN   EK  L + K++ K  A 
Sbjct: 200 AHADMEQGQKIDYDENLWDMQKLIQEKYKKIYEKRRYKINKEEEKQRLKREKELKKKLAA 259

Query: 647 KKRAEK 664
           KK+AEK
Sbjct: 260 KKKAEK 265

>UBP13_HUMAN (Q92995) Ubiquitin carboxyl-terminal hydrolase 13 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 13)
           (Ubiquitin-specific-processing protease 13)
           (Deubiquitinating enzyme 13) (Isopeptidase T-3) (ISOT-3)
          Length = 863

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 305 GEVGLEEGQKEEIVAIITGMGF-KNEVSKKLNA 400
           G  GL+    EEIVAIIT MGF +N+  + L A
Sbjct: 720 GASGLDNQPPEEIVAIITSMGFQRNQAIQALRA 752

>THII_HAEI8 (Q4QKG3) Thiamine biosynthesis protein thiI|
          Length = 485

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 21/102 (20%), Positives = 45/102 (44%)
 Frame = +2

Query: 131 AAHALRVRDLALSLAAEQGVSSPDRLLIVELAALLHDIGDYKYTKDNAEDMSIVKRFLGE 310
           AAH + V+ +A  +      S   R + +    +   +G+     DN +   ++KR +  
Sbjct: 214 AAHEIGVKQMAYHIWQRYSASHKVRFITINFEGV---VGEILEKVDNGQMGVVLKRMMVR 270

Query: 311 VGLEEGQKEEIVAIITGMGFKNEVSKKLNAETTLEFAIVQDA 436
              +  Q+  I AI+TG     E   +++++T     ++ +A
Sbjct: 271 AASKVAQRFNIEAIVTG-----EALGQVSSQTLTNLRLIDEA 307

>GLNA_PYRWO (P36687) Glutamine synthetase 1 (EC 6.3.1.2) (Glutamine synthetase|
           I) (Glutamate--ammonia ligase) (GSI)
          Length = 439

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
 Frame = +2

Query: 221 LAALLHDIGDYKYTKDNAEDMSIVKR----------FLGEVGLEEGQKEEIVAIITGMGF 370
           L  + H I  + Y ++N  +MS  KR           LGE  LEE +K+++V    G  +
Sbjct: 340 LDGIKHKIDPFAYVEENVYEMSEEKRKELGIETLPGSLGEA-LEELEKDKVVKEALGDAY 398

Query: 371 KNEVSKKLNA-ETTLEF 418
           KN ++ K    E+ LE+
Sbjct: 399 KNFINYKWKEWESYLEY 415

>GLNA_PYRFU (Q05907) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia|
           ligase) (GS)
          Length = 439

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
 Frame = +2

Query: 221 LAALLHDIGDYKYTKDNAEDMSIVKR----------FLGEVGLEEGQKEEIVAIITGMGF 370
           L  + H I  + Y ++N  +MS  KR           LGE  LEE +K+++V    G  +
Sbjct: 340 LDGIKHKIDPFAYVEENVYEMSEEKRKELGIETLPGSLGEA-LEELEKDKVVKEALGDAY 398

Query: 371 KNEVSKKLNA-ETTLEF 418
           KN ++ K    E+ LE+
Sbjct: 399 KNFINYKWKEWESYLEY 415

>FRAP_HUMAN (P42345) FKBP12-rapamycin complex-associated protein (FK506-binding|
            protein 12-rapamycin complex-associated protein 1)
            (Rapamycin target protein) (RAPT1) (Mammalian target of
            rapamycin) (MTOR)
          Length = 2549

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = -3

Query: 498  LLPPYVKHLATPIAPIASRRSASCTIANSRVVSALSF--FETSFLNPI 361
            LLPP VK    P AP+ SR++A  T+   R+  +L F  + +  ++PI
Sbjct: 1114 LLPPIVKLFDAPEAPLPSRKAALETV--DRLTESLDFTDYASRIIHPI 1159

>EX1_HAEIN (P45188) Exodeoxyribonuclease I (EC 3.1.11.1) (Exonuclease I) (DNA|
           deoxyribophosphodiesterase) (dRPase)
          Length = 473

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 24/85 (28%), Positives = 37/85 (43%)
 Frame = -2

Query: 538 IPRKYVRIMQCTVLAPSICKTSCNANRTNCIQTICILHDCKLKSGLCIKLL*NLIFESHP 359
           +P K V I +C +LAP+       ANR    + +C+ +  KL++   I+     IF    
Sbjct: 294 VPLKLVHINKCPILAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIF---- 349

Query: 358 CNNGHYFXXXXXLETHLSKKPFDDA 284
            N    F     +ET L    F +A
Sbjct: 350 -NEERQFASNDNVETELYNGFFSNA 373

>ATP8_PELSU (O79674) ATP synthase protein 8 (EC 3.6.3.14) (ATPase subunit 8)|
           (A6L)
          Length = 55

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -3

Query: 393 SFFETSFLNPIPVIMATISSFCPSSRPTSPRNLLT 289
           S F TS+L  I +++  I S  P++ PT+ +N+LT
Sbjct: 11  SIFITSWLILIIILLPKIKSHIPNNSPTNKKNMLT 45

>CDC15_SCHPO (Q09822) Cell division control protein 15|
          Length = 927

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = -3

Query: 459 APIASRRSASCTIANSRVVSALSFFETSFLNPIPVIMATISSFCPSSRPTSPRNL 295
           +P+ SRRS++   +  R  S+LS  ++  ++P P   A   S     RP+S  +L
Sbjct: 702 SPMLSRRSSTLRPSFERSASSLSVRQSDVVSPAPSTRARGQSVSGQQRPSSSMSL 756

>SYH_PYRAB (Q9UY31) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 431

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 22/122 (18%)
 Frame = +2

Query: 188 VSSPDRLLIVELAALL---HDIGDYKYT--KDNAEDMSIVKRFLGEVGLEEGQKEEIVAI 352
           V+  DR+L+ E A +L    DIG  +    KD       +K  LGE GL+E   E+++ +
Sbjct: 156 VNIGDRVLLDEFAKMLGVKDDIGLMRIIDKKDKLSQEEFLKA-LGEFGLDENGIEKVLNL 214

Query: 353 I-----------------TGMGFKNEVSKKLNAETTLEFAIVQDADRLDAIGAIGVARCF 481
           I                 T    K E+S+  N    L +  V +  ++D    +G+AR F
Sbjct: 215 IEIKGKPDDVLPLAEELFTSERAKEEISRLYNLVDILSWYEVDEWIQID----LGIARGF 270

Query: 482 TY 487
            Y
Sbjct: 271 DY 272

>MMRN2_HUMAN (Q9H8L6) Multimerin-2 precursor (EMILIN-3) (Elastin microfibril|
           interface located protein 3) (Elastin microfibril
           interfacer 3) (EndoGlyx-1 p125/p140 subunit)
          Length = 949

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 23/87 (26%), Positives = 38/87 (43%)
 Frame = +2

Query: 92  VEREMSGRDASHDAAHALRVRDLALSLAAEQGVSSPDRLLIVELAALLHDIGDYKYTKDN 271
           VER++     +H A   LRV  +  SL  E+     +R L+     L H  G +      
Sbjct: 429 VERQVEELQVNHTALRELRVILMEKSLIMEENKEEVERQLLELNLTLQHLQGGHADLIKY 488

Query: 272 AEDMSIVKRFLGEVGLEEGQKEEIVAI 352
            +D +  K +L    + EGQ++   A+
Sbjct: 489 VKDCNCQKLYLDLDVIREGQRDATRAL 515


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,870,036
Number of Sequences: 219361
Number of extensions: 1593630
Number of successful extensions: 5558
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5551
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6484657212
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)