| Clone Name | basd13m20 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK070384.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052E08, full insert sequence Length = 1010 Score = 617 bits (311), Expect = e-173 Identities = 535/609 (87%), Gaps = 3/609 (0%) Strand = Plus / Plus Query: 63 cggcggcggtgcggtgtgccgaggagctagtggagagggagatgagcgggcgcgacgcct 122 |||||||||||||| || |||||||| | ||||||||||||| ||||||||||||| Sbjct: 80 cggcggcggtgcgggcggcggaggagcttgcggagagggagatggcggggcgcgacgcct 139 Query: 123 cccacgacgccgctcacgcactccgcgtccgggacctcgcgctctccctcgccgccgagc 182 ||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct: 140 cccacgacgccgcccacgccctccgcgtccgcgacctcgcgctctccctcgccgccgagc 199 Query: 183 agggcgtctcctcc---ccggaccgcctcctcatcgtggaactggctgcactcctgcacg 239 ||| |||||||| || |||||||||||||||||||| | || || |||||||| | Sbjct: 200 tcggcctctcctcctcccccgaccgcctcctcatcgtggagatagccgcgctcctgcatg 259 Query: 240 acatcggtgattacaagtataccaaggataatgcggaggatatgagcatcgtcaaaaggt 299 ||||||||||||||||||| |||||||| ||||| ||||||||||||||||| | |||| Sbjct: 260 acatcggtgattacaagtacaccaaggacaatgctgaggatatgagcatcgtggagaggt 319 Query: 300 ttcttggagaggtgggtctcgaggagggacagaaggaggaaatagtggccattattacag 359 |||||| |||||||| || ||| |||| |||| ||||||||| ||||| || |||| | Sbjct: 320 ttcttgaagaggtggaactggagcagggccagagggaggaaattgtggcgatcattaagg 379 Query: 360 ggatgggattcaaaaatgaggtttcaaagaagcttaatgcagagaccactcttgagtttg 419 ||||||||||||||||||| |||||||||||| | || ||| | ||||||||||||| Sbjct: 380 ggatgggattcaaaaatgaagtttcaaagaagtctgttgttgagcctactcttgagtttg 439 Query: 420 caatcgtgcaagatgcagatcgtctggatgcaattggtgcgattggcgttgcaagatgtt 479 |||| || ||||||||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 440 caattgtacaagatgcagatcgtcttgatgcaattggtgcaattggtattgcaagatgtt 499 Query: 480 ttacatatggagggagcaagaacagtgcattgcatgatcctaacgtacttccgcgggata 539 |||| ||||| ||||||||||| | |||||||||||||||| |||| ||||| |||| Sbjct: 500 ttacgtatggtgggagcaagaaaaacacattgcatgatcctaagatactgccgcgtgata 559 Query: 540 atttgtcaaaggagaagtacatgtccaaggaggagaaacaaacatcaattaatcatttcc 599 |||||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||| Sbjct: 560 atttgtcaaaggagaaatacatgtccaaggatgaaaaacagacatcaattaatcatttcc 619 Query: 600 atgagaagctttttaagttgaaggacatgatgaagacagaggctgggaaaaagagagcag 659 |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 620 atgagaagctatttaagttgaaggacatgatgaagacagaggccgggaaaaagagagcag 679 Query: 660 agaaaaggc 668 ||||||||| Sbjct: 680 agaaaaggc 688
>gb|AY104455.1| Zea mays PCO091750 mRNA sequence Length = 1044 Score = 484 bits (244), Expect = e-133 Identities = 520/612 (84%) Strand = Plus / Plus Query: 57 aaatgacggcggcggtgcggtgtgccgaggagctagtggagagggagatgagcgggcgcg 116 ||||| |||||||||||||| | || |||||||| ||||||||||||||| ||||||||| Sbjct: 125 aaatggcggcggcggtgcggcgagcggaggagctggtggagagggagatgggcgggcgcg 184 Query: 117 acgcctcccacgacgccgctcacgcactccgcgtccgggacctcgcgctctccctcgccg 176 ||||||||||||||||||| ||||| ||||||||||| ||||| |||||||| ||||| | Sbjct: 185 acgcctcccacgacgccgcgcacgcgctccgcgtccgagaccttgcgctctcgctcgcag 244 Query: 177 ccgagcagggcgtctcctccccggaccgcctcctcatcgtggaactggctgcactcctgc 236 |||| ||||| ||||| | || ||||||||||||| |||||||||||| || ||||||| Sbjct: 245 ccgaagagggcctctccgctcccgaccgcctcctcaccgtggaactggccgctctcctgc 304 Query: 237 acgacatcggtgattacaagtataccaaggataatgcggaggatatgagcatcgtcaaaa 296 ||||| | || |||||||||||||||||| | |||| ||||||||| ||| |||| | | Sbjct: 305 acgacgttggagattacaagtataccaagaacaatgtggaggatataagcgtcgttgaga 364 Query: 297 ggtttcttggagaggtgggtctcgaggagggacagaaggaggaaatagtggccattatta 356 ||||||| |||||| || | || || || || ||||| ||||||||||| ||||||| Sbjct: 365 tgtttcttcaagaggtaggattggatgaaggccaaaaggatgaaatagtggcaattatta 424 Query: 357 cagggatgggattcaaaaatgaggtttcaaagaagcttaatgcagagaccactcttgagt 416 |||||||| ||||||||||| |||||||| || || || ||| |||||||||| | Sbjct: 425 aggggatggggttcaaaaatgaagtttcaaataaatctattgttgagcccactcttgaat 484 Query: 417 ttgcaatcgtgcaagatgcagatcgtctggatgcaattggtgcgattggcgttgcaagat 476 ||||||| || |||||||||||||| ||||||||||||| || ||||| ||||||||| Sbjct: 485 ttgcaattgtacaagatgcagatcgcttggatgcaattggggcaattggtattgcaagat 544 Query: 477 gttttacatatggagggagcaagaacagtgcattgcatgatcctaacgtacttccgcggg 536 ||||||||||||| || ||||||||||| ||||| |||||||||| | || || || | Sbjct: 545 gttttacatatggtggtagcaagaacagcgcattacatgatcctagaattctgccacgtg 604 Query: 537 ataatttgtcaaaggagaagtacatgtccaaggaggagaaacaaacatcaattaatcatt 596 ||| ||||| || || ||||||||||||||||| ||||| || |||||||| ||||||| Sbjct: 605 atagcttgtcgaaagaaaagtacatgtccaaggaagagaagcagacatcaatcaatcatt 664 Query: 597 tccatgagaagctttttaagttgaaggacatgatgaagacagaggctgggaaaaagagag 656 | ||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||| Sbjct: 665 ttcatgagaagctttttaaactgaaggacatgatgaagacagaggccgggaaaaggagag 724 Query: 657 cagagaaaaggc 668 | |||||||||| Sbjct: 725 ctgagaaaaggc 736
>ref|NM_197081.1| Oryza sativa (japonica cultivar-group) putative HD domain protein (OSJNBa0029C15.4), mRNA Length = 1131 Score = 359 bits (181), Expect = 8e-96 Identities = 351/407 (86%), Gaps = 3/407 (0%) Strand = Plus / Plus Query: 63 cggcggcggtgcggtgtgccgaggagctagtggagagggagatgagcgggcgcgacgcct 122 |||||||||||||| || |||||||| | ||||||||||||| ||||||||||||| Sbjct: 8 cggcggcggtgcgggcggcggaggagcttgcggagagggagatggcggggcgcgacgcct 67 Query: 123 cccacgacgccgctcacgcactccgcgtccgggacctcgcgctctccctcgccgccgagc 182 ||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct: 68 cccacgacgccgcccacgccctccgcgtccgcgacctcgcgctctccctcgccgccgagc 127 Query: 183 agggcgt---ctcctccccggaccgcctcctcatcgtggaactggctgcactcctgcacg 239 ||| | ||||||||| |||||||||||||||||||| | || || |||||||| | Sbjct: 128 tcggcctctcctcctcccccgaccgcctcctcatcgtggagatagccgcgctcctgcatg 187 Query: 240 acatcggtgattacaagtataccaaggataatgcggaggatatgagcatcgtcaaaaggt 299 ||||||||||||||||||| |||||||| ||||| ||||||||||||||||| | |||| Sbjct: 188 acatcggtgattacaagtacaccaaggacaatgctgaggatatgagcatcgtggagaggt 247 Query: 300 ttcttggagaggtgggtctcgaggagggacagaaggaggaaatagtggccattattacag 359 |||||| |||||||| || ||| |||| |||| ||||||||| ||||| || |||| | Sbjct: 248 ttcttgaagaggtggaactggagcagggccagagggaggaaattgtggcgatcattaagg 307 Query: 360 ggatgggattcaaaaatgaggtttcaaagaagcttaatgcagagaccactcttgagtttg 419 ||||||||||||||||||| |||||||||||| | || ||| | ||||||||||||| Sbjct: 308 ggatgggattcaaaaatgaagtttcaaagaagtctgttgttgagcctactcttgagtttg 367 Query: 420 caatcgtgcaagatgcagatcgtctggatgcaattggtgcgattggc 466 |||| || ||||||||||||||||| |||||||||||||| |||||| Sbjct: 368 caattgtacaagatgcagatcgtcttgatgcaattggtgcaattggc 414 Score = 272 bits (137), Expect = 1e-69 Identities = 185/201 (92%) Strand = Plus / Plus Query: 468 ttgcaagatgttttacatatggagggagcaagaacagtgcattgcatgatcctaacgtac 527 |||||||||||||||| ||||| ||||||||||| | |||||||||||||||| ||| Sbjct: 503 ttgcaagatgttttacgtatggtgggagcaagaaaaacacattgcatgatcctaagatac 562 Query: 528 ttccgcgggataatttgtcaaaggagaagtacatgtccaaggaggagaaacaaacatcaa 587 | ||||| |||||||||||||||||||| |||||||||||||| || ||||| ||||||| Sbjct: 563 tgccgcgtgataatttgtcaaaggagaaatacatgtccaaggatgaaaaacagacatcaa 622 Query: 588 ttaatcatttccatgagaagctttttaagttgaaggacatgatgaagacagaggctggga 647 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct: 623 ttaatcatttccatgagaagctatttaagttgaaggacatgatgaagacagaggccggga 682 Query: 648 aaaagagagcagagaaaaggc 668 ||||||||||||||||||||| Sbjct: 683 aaaagagagcagagaaaaggc 703
>dbj|AK109052.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-154-E06, full insert sequence Length = 1448 Score = 337 bits (170), Expect = 3e-89 Identities = 239/262 (91%) Strand = Plus / Plus Query: 407 actcttgagtttgcaatcgtgcaagatgcagatcgtctggatgcaattggtgcgattggc 466 ||||||||||||||||| || ||||||| ||||||||| |||||||||||||| ||||| Sbjct: 15 actcttgagtttgcaattgtacaagatgtagatcgtcttgatgcaattggtgcaattggt 74 Query: 467 gttgcaagatgttttacatatggagggagcaagaacagtgcattgcatgatcctaacgta 526 |||||||||||||||| ||||| ||||||||||| | |||||||||||||||| || Sbjct: 75 attgcaagatgttttacgtatggtgggagcaagaaaaacacattgcatgatcctaagata 134 Query: 527 cttccgcgggataatttgtcaaaggagaagtacatgtccaaggaggagaaacaaacatca 586 || ||||| |||||||||||||||||||| |||||||||||||| || ||||| |||||| Sbjct: 135 ctgccgcgtgataatttgtcaaaggagaaatacatgtccaaggatgaaaaacagacatca 194 Query: 587 attaatcatttccatgagaagctttttaagttgaaggacatgatgaagacagaggctggg 646 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct: 195 attaatcatttccatgagaagctatttaagttgaaggacatgatgaagacagaggccggg 254 Query: 647 aaaaagagagcagagaaaaggc 668 |||||||||||||||||||||| Sbjct: 255 aaaaagagagcagagaaaaggc 276
>gb|BT017587.1| Zea mays clone EL01N0430C11.c mRNA sequence Length = 916 Score = 293 bits (148), Expect = 4e-76 Identities = 377/453 (83%), Gaps = 4/453 (0%) Strand = Plus / Plus Query: 215 gtggaactggctgcactcctgcacgacatcggtgattacaagtataccaaggataatgcg 274 ||||||||||| || |||||||||||| | |||||||||||||||||| | |||| | Sbjct: 92 gtggaactggccgctctcctgcacgac----gagattacaagtataccaagaacaatgtg 147 Query: 275 gaggatatgagcatcgtcaaaaggtttcttggagaggtgggtctcgaggagggacagaag 334 |||||||||||| |||| | ||| ||| |||||| || | || || || || ||| Sbjct: 148 gaggatatgagcgtcgttgagagggggcttcaagaggtaggattggatgaagggcaaaag 207 Query: 335 gaggaaatagtggccattattacagggatgggattcaaaaatgaggtttcaaagaagctt 394 || ||||||||||| ||||||| |||||||| ||||||||||| |||||||| || | Sbjct: 208 gatgaaatagtggcaattattaaggggatggggttcaaaaatgaagtttcaaataaatct 267 Query: 395 aatgcagagaccactcttgagtttgcaatcgtgcaagatgcagatcgtctggatgcaatt 454 | || ||| |||||||||| |||||||| || |||||||||||||| |||||||||||| Sbjct: 268 attggtgagcccactcttgaatttgcaattgtacaagatgcagatcgcctggatgcaatt 327 Query: 455 ggtgcgattggcgttgcaagatgttttacatatggagggagcaagaacagtgcattgcat 514 || || ||||| |||||||||||||||||||||| || ||||||||||| ||||| ||| Sbjct: 328 ggggcaattggtattgcaagatgttttacatatggtggtagcaagaacagcgcattacat 387 Query: 515 gatcctaacgtacttccgcgggataatttgtcaaaggagaagtacatgtccaaggaggag 574 ||||||| | || || || | || ||||| ||||| ||||||||||||||||| ||| Sbjct: 388 gatcctagaattctgccacgtgttagcttgtcgaaggaaaagtacatgtccaaggaagag 447 Query: 575 aaacaaacatcaattaatcatttccatgagaagctttttaagttgaaggacatgatgaag 634 || || |||||||| |||||||| ||||||||||||||||| ||||||||||||||||| Sbjct: 448 aagcagacatcaatcaatcattttcatgagaagctttttaaactgaaggacatgatgaag 507 Query: 635 acagaggctgggaaaaagagagcagagaaaagg 667 |||||||| ||||||| ||| || ||||||||| Sbjct: 508 acagaggccgggaaaaggagggctgagaaaagg 540
>gb|AC087182.12| Oryza sativa chromosome 10 BAC OSJNBa0029C15 genomic sequence, complete sequence Length = 148816 Score = 226 bits (114), Expect = 7e-56 Identities = 159/174 (91%) Strand = Plus / Minus Query: 468 ttgcaagatgttttacatatggagggagcaagaacagtgcattgcatgatcctaacgtac 527 |||||||||||||||| ||||| ||||||||||| | |||||||||||||||| ||| Sbjct: 57922 ttgcaagatgttttacgtatggtgggagcaagaaaaacacattgcatgatcctaagatac 57863 Query: 528 ttccgcgggataatttgtcaaaggagaagtacatgtccaaggaggagaaacaaacatcaa 587 | ||||| |||||||||||||||||||| |||||||||||||| || ||||| ||||||| Sbjct: 57862 tgccgcgtgataatttgtcaaaggagaaatacatgtccaaggatgaaaaacagacatcaa 57803 Query: 588 ttaatcatttccatgagaagctttttaagttgaaggacatgatgaagacagagg 641 |||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 57802 ttaatcatttccatgagaagctatttaagttgaaggacatgatgaagacagagg 57749 Score = 157 bits (79), Expect = 6e-35 Identities = 138/157 (87%), Gaps = 3/157 (1%) Strand = Plus / Minus Query: 63 cggcggcggtgcggtgtgccgaggagctagtggagagggagatgagcgggcgcgacgcct 122 |||||||||||||| || |||||||| | ||||||||||||| ||||||||||||| Sbjct: 60602 cggcggcggtgcgggcggcggaggagcttgcggagagggagatggcggggcgcgacgcct 60543 Query: 123 cccacgacgccgctcacgcactccgcgtccgggacctcgcgctctccctcgccgccgagc 182 ||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct: 60542 cccacgacgccgcccacgccctccgcgtccgcgacctcgcgctctccctcgccgccgagc 60483 Query: 183 agggcgt---ctcctccccggaccgcctcctcatcgt 216 ||| | ||||||||| ||||||||||||||||| Sbjct: 60482 tcggcctctcctcctcccccgaccgcctcctcatcgt 60446 Score = 99.6 bits (50), Expect = 1e-17 Identities = 89/102 (87%) Strand = Plus / Minus Query: 365 ggattcaaaaatgaggtttcaaagaagcttaatgcagagaccactcttgagtttgcaatc 424 |||||||||||||| |||||||||||| | || ||| | ||||||||||||||||| Sbjct: 58791 ggattcaaaaatgaagtttcaaagaagtctgttgttgagcctactcttgagtttgcaatt 58732 Query: 425 gtgcaagatgcagatcgtctggatgcaattggtgcgattggc 466 || ||||||||||||||||| |||||||||||||| |||||| Sbjct: 58731 gtacaagatgcagatcgtcttgatgcaattggtgcaattggc 58690 Score = 67.9 bits (34), Expect = 4e-08 Identities = 82/98 (83%) Strand = Plus / Minus Query: 269 aatgcggaggatatgagcatcgtcaaaaggtttcttggagaggtgggtctcgaggaggga 328 ||||| ||||||||||||||||| | |||||||||| |||||||| || ||| |||| Sbjct: 59132 aatgctgaggatatgagcatcgtggagaggtttcttgaagaggtggaactggagcagggc 59073 Query: 329 cagaaggaggaaatagtggccattattacagggatggg 366 |||| ||||||||| ||||| || |||| |||||||| Sbjct: 59072 cagagggaggaaattgtggcgatcattaaggggatggg 59035 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 639 aggctgggaaaaagagagcagagaaaaggc 668 |||| ||||||||||||||||||||||||| Sbjct: 57307 aggccgggaaaaagagagcagagaaaaggc 57278
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 226 bits (114), Expect = 7e-56 Identities = 159/174 (91%) Strand = Plus / Plus Query: 468 ttgcaagatgttttacatatggagggagcaagaacagtgcattgcatgatcctaacgtac 527 |||||||||||||||| ||||| ||||||||||| | |||||||||||||||| ||| Sbjct: 17874119 ttgcaagatgttttacgtatggtgggagcaagaaaaacacattgcatgatcctaagatac 17874178 Query: 528 ttccgcgggataatttgtcaaaggagaagtacatgtccaaggaggagaaacaaacatcaa 587 | ||||| |||||||||||||||||||| |||||||||||||| || ||||| ||||||| Sbjct: 17874179 tgccgcgtgataatttgtcaaaggagaaatacatgtccaaggatgaaaaacagacatcaa 17874238 Query: 588 ttaatcatttccatgagaagctttttaagttgaaggacatgatgaagacagagg 641 |||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 17874239 ttaatcatttccatgagaagctatttaagttgaaggacatgatgaagacagagg 17874292 Score = 157 bits (79), Expect = 6e-35 Identities = 138/157 (87%), Gaps = 3/157 (1%) Strand = Plus / Plus Query: 63 cggcggcggtgcggtgtgccgaggagctagtggagagggagatgagcgggcgcgacgcct 122 |||||||||||||| || |||||||| | ||||||||||||| ||||||||||||| Sbjct: 17871439 cggcggcggtgcgggcggcggaggagcttgcggagagggagatggcggggcgcgacgcct 17871498 Query: 123 cccacgacgccgctcacgcactccgcgtccgggacctcgcgctctccctcgccgccgagc 182 ||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct: 17871499 cccacgacgccgcccacgccctccgcgtccgcgacctcgcgctctccctcgccgccgagc 17871558 Query: 183 agggcgt---ctcctccccggaccgcctcctcatcgt 216 ||| | ||||||||| ||||||||||||||||| Sbjct: 17871559 tcggcctctcctcctcccccgaccgcctcctcatcgt 17871595 Score = 99.6 bits (50), Expect = 1e-17 Identities = 89/102 (87%) Strand = Plus / Plus Query: 365 ggattcaaaaatgaggtttcaaagaagcttaatgcagagaccactcttgagtttgcaatc 424 |||||||||||||| |||||||||||| | || ||| | ||||||||||||||||| Sbjct: 17873250 ggattcaaaaatgaagtttcaaagaagtctgttgttgagcctactcttgagtttgcaatt 17873309 Query: 425 gtgcaagatgcagatcgtctggatgcaattggtgcgattggc 466 || ||||||||||||||||| |||||||||||||| |||||| Sbjct: 17873310 gtacaagatgcagatcgtcttgatgcaattggtgcaattggc 17873351 Score = 67.9 bits (34), Expect = 4e-08 Identities = 82/98 (83%) Strand = Plus / Plus Query: 269 aatgcggaggatatgagcatcgtcaaaaggtttcttggagaggtgggtctcgaggaggga 328 ||||| ||||||||||||||||| | |||||||||| |||||||| || ||| |||| Sbjct: 17872909 aatgctgaggatatgagcatcgtggagaggtttcttgaagaggtggaactggagcagggc 17872968 Query: 329 cagaaggaggaaatagtggccattattacagggatggg 366 |||| ||||||||| ||||| || |||| |||||||| Sbjct: 17872969 cagagggaggaaattgtggcgatcattaaggggatggg 17873006 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 639 aggctgggaaaaagagagcagagaaaaggc 668 |||| ||||||||||||||||||||||||| Sbjct: 17874734 aggccgggaaaaagagagcagagaaaaggc 17874763
>dbj|AK106675.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-A07, full insert sequence Length = 1734 Score = 226 bits (114), Expect = 7e-56 Identities = 159/174 (91%) Strand = Plus / Plus Query: 468 ttgcaagatgttttacatatggagggagcaagaacagtgcattgcatgatcctaacgtac 527 |||||||||||||||| ||||| ||||||||||| | |||||||||||||||| ||| Sbjct: 1234 ttgcaagatgttttacgtatggtgggagcaagaaaaacacattgcatgatcctaagatac 1293 Query: 528 ttccgcgggataatttgtcaaaggagaagtacatgtccaaggaggagaaacaaacatcaa 587 | ||||| |||||||||||||||||||| |||||||||||||| || ||||| ||||||| Sbjct: 1294 tgccgcgtgataatttgtcaaaggagaaatacatgtccaaggatgaaaaacagacatcaa 1353 Query: 588 ttaatcatttccatgagaagctttttaagttgaaggacatgatgaagacagagg 641 |||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 1354 ttaatcatttccatgagaagctatttaagttgaaggacatgatgaagacagagg 1407 Score = 168 bits (85), Expect = 1e-38 Identities = 162/187 (86%), Gaps = 3/187 (1%) Strand = Plus / Plus Query: 63 cggcggcggtgcggtgtgccgaggagctagtggagagggagatgagcgggcgcgacgcct 122 |||||||||||||| || |||||||| | ||||||||||||| ||||||||||||| Sbjct: 79 cggcggcggtgcgggcggcggaggagcttgcggagagggagatggcggggcgcgacgcct 138 Query: 123 cccacgacgccgctcacgcactccgcgtccgggacctcgcgctctccctcgccgccgagc 182 ||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct: 139 cccacgacgccgcccacgccctccgcgtccgcgacctcgcgctctccctcgccgccgagc 198 Query: 183 agggcgt---ctcctccccggaccgcctcctcatcgtggaactggctgcactcctgcacg 239 ||| | ||||||||| |||||||||||||||||||| | || || |||||||| | Sbjct: 199 tcggcctctcctcctcccccgaccgcctcctcatcgtggagatagccgcgctcctgcatg 258 Query: 240 acatcgg 246 ||||||| Sbjct: 259 acatcgg 265 Score = 163 bits (82), Expect = 9e-37 Identities = 169/198 (85%) Strand = Plus / Plus Query: 269 aatgcggaggatatgagcatcgtcaaaaggtttcttggagaggtgggtctcgaggaggga 328 ||||| ||||||||||||||||| | |||||||||| |||||||| || ||| |||| Sbjct: 269 aatgctgaggatatgagcatcgtggagaggtttcttgaagaggtggaactggagcagggc 328 Query: 329 cagaaggaggaaatagtggccattattacagggatgggattcaaaaatgaggtttcaaag 388 |||| ||||||||| ||||| || |||| |||||||||||||||||||| ||||||||| Sbjct: 329 cagagggaggaaattgtggcgatcattaaggggatgggattcaaaaatgaagtttcaaag 388 Query: 389 aagcttaatgcagagaccactcttgagtttgcaatcgtgcaagatgcagatcgtctggat 448 ||| | || ||| | ||||||||||||||||| || ||||||||||||||||| ||| Sbjct: 389 aagtctgttgttgagcctactcttgagtttgcaattgtacaagatgcagatcgtcttgat 448 Query: 449 gcaattggtgcgattggc 466 ||||||||||| |||||| Sbjct: 449 gcaattggtgcaattggc 466
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 226 bits (114), Expect = 7e-56 Identities = 159/174 (91%) Strand = Plus / Plus Query: 468 ttgcaagatgttttacatatggagggagcaagaacagtgcattgcatgatcctaacgtac 527 |||||||||||||||| ||||| ||||||||||| | |||||||||||||||| ||| Sbjct: 17883372 ttgcaagatgttttacgtatggtgggagcaagaaaaacacattgcatgatcctaagatac 17883431 Query: 528 ttccgcgggataatttgtcaaaggagaagtacatgtccaaggaggagaaacaaacatcaa 587 | ||||| |||||||||||||||||||| |||||||||||||| || ||||| ||||||| Sbjct: 17883432 tgccgcgtgataatttgtcaaaggagaaatacatgtccaaggatgaaaaacagacatcaa 17883491 Query: 588 ttaatcatttccatgagaagctttttaagttgaaggacatgatgaagacagagg 641 |||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 17883492 ttaatcatttccatgagaagctatttaagttgaaggacatgatgaagacagagg 17883545 Score = 157 bits (79), Expect = 6e-35 Identities = 138/157 (87%), Gaps = 3/157 (1%) Strand = Plus / Plus Query: 63 cggcggcggtgcggtgtgccgaggagctagtggagagggagatgagcgggcgcgacgcct 122 |||||||||||||| || |||||||| | ||||||||||||| ||||||||||||| Sbjct: 17880692 cggcggcggtgcgggcggcggaggagcttgcggagagggagatggcggggcgcgacgcct 17880751 Query: 123 cccacgacgccgctcacgcactccgcgtccgggacctcgcgctctccctcgccgccgagc 182 ||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct: 17880752 cccacgacgccgcccacgccctccgcgtccgcgacctcgcgctctccctcgccgccgagc 17880811 Query: 183 agggcgt---ctcctccccggaccgcctcctcatcgt 216 ||| | ||||||||| ||||||||||||||||| Sbjct: 17880812 tcggcctctcctcctcccccgaccgcctcctcatcgt 17880848 Score = 99.6 bits (50), Expect = 1e-17 Identities = 89/102 (87%) Strand = Plus / Plus Query: 365 ggattcaaaaatgaggtttcaaagaagcttaatgcagagaccactcttgagtttgcaatc 424 |||||||||||||| |||||||||||| | || ||| | ||||||||||||||||| Sbjct: 17882503 ggattcaaaaatgaagtttcaaagaagtctgttgttgagcctactcttgagtttgcaatt 17882562 Query: 425 gtgcaagatgcagatcgtctggatgcaattggtgcgattggc 466 || ||||||||||||||||| |||||||||||||| |||||| Sbjct: 17882563 gtacaagatgcagatcgtcttgatgcaattggtgcaattggc 17882604 Score = 67.9 bits (34), Expect = 4e-08 Identities = 82/98 (83%) Strand = Plus / Plus Query: 269 aatgcggaggatatgagcatcgtcaaaaggtttcttggagaggtgggtctcgaggaggga 328 ||||| ||||||||||||||||| | |||||||||| |||||||| || ||| |||| Sbjct: 17882162 aatgctgaggatatgagcatcgtggagaggtttcttgaagaggtggaactggagcagggc 17882221 Query: 329 cagaaggaggaaatagtggccattattacagggatggg 366 |||| ||||||||| ||||| || |||| |||||||| Sbjct: 17882222 cagagggaggaaattgtggcgatcattaaggggatggg 17882259 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 639 aggctgggaaaaagagagcagagaaaaggc 668 |||| ||||||||||||||||||||||||| Sbjct: 17883987 aggccgggaaaaagagagcagagaaaaggc 17884016
>emb|AL591981.1| Listeria monocytogenes strain EGD, complete genome, segment 9/12 Length = 347050 Score = 48.1 bits (24), Expect = 0.037 Identities = 30/32 (93%) Strand = Plus / Minus Query: 428 caagatgcagatcgtctggatgcaattggtgc 459 ||||||||||| ||| |||||||||||||||| Sbjct: 101325 caagatgcagaccgtttggatgcaattggtgc 101294
>gb|AC152158.10| Medicago truncatula clone mth2-139g10, complete sequence Length = 140874 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Plus Query: 576 aacaaacatcaattaatcatttccatgagaagctt 610 ||||||| ||||||||||||| |||||||||||| Sbjct: 122875 aacaaactacaattaatcattttcatgagaagctt 122909
>gb|AC161033.18| Medicago truncatula clone mth2-57g13, complete sequence Length = 109039 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Plus Query: 576 aacaaacatcaattaatcatttccatgagaagctt 610 ||||||| ||||||||||||| |||||||||||| Sbjct: 18059 aacaaactacaattaatcattttcatgagaagctt 18093
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Minus Query: 221 ctggctgcactcctgcacgacatcgg 246 ||||| |||||||||||||||||||| Sbjct: 3625287 ctggccgcactcctgcacgacatcgg 3625262
>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29 Length = 290850 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Minus Query: 168 ccctcgccgccgagcagggcgtctcc 193 ||||||||||||||| |||||||||| Sbjct: 75032 ccctcgccgccgagctgggcgtctcc 75007
>gb|AC018755.3|AC018755 Homo sapiens chromosome 19, BAC BC330783 (CIT-HSPC_470E3), complete sequence Length = 229155 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 646 gaaaaagagagcagagaaaagg 667 |||||||||||||||||||||| Sbjct: 72418 gaaaaagagagcagagaaaagg 72439
>ref|XM_634007.1| Dictyostelium discoideum hypothetical protein (DDB0218506), partial mRNA Length = 2349 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 575 aaacaaacatcaattaatcat 595 ||||||||||||||||||||| Sbjct: 1822 aaacaaacatcaattaatcat 1842
>ref|XM_364293.1| Magnaporthe grisea 70-15 hypothetical protein (MG09138.4) partial mRNA Length = 672 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 302 cttggagaggtgggtctcgag 322 ||||||||||||||||||||| Sbjct: 462 cttggagaggtgggtctcgag 442
>gb|AY550908.1| Mus musculus hyperplastic discs protein (Edd) mRNA, complete cds Length = 8858 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 408 ctcttgagtttgcaatcgtgc 428 ||||||||||||||||||||| Sbjct: 3693 ctcttgagtttgcaatcgtgc 3673
>ref|XM_984858.1| PREDICTED: Mus musculus E3 ubiquitin protein ligase, HECT domain containing, 1 (Edd1), mRNA Length = 10026 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 408 ctcttgagtttgcaatcgtgc 428 ||||||||||||||||||||| Sbjct: 4338 ctcttgagtttgcaatcgtgc 4318
>ref|XM_912064.2| PREDICTED: Mus musculus E3 ubiquitin protein ligase, HECT domain containing, 1, transcript variant 10 (Edd1), mRNA Length = 9455 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 408 ctcttgagtttgcaatcgtgc 428 ||||||||||||||||||||| Sbjct: 3767 ctcttgagtttgcaatcgtgc 3747
>ref|XM_898880.2| PREDICTED: Mus musculus E3 ubiquitin protein ligase, HECT domain containing, 1, transcript variant 8 (Edd1), mRNA Length = 6546 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 408 ctcttgagtttgcaatcgtgc 428 ||||||||||||||||||||| Sbjct: 858 ctcttgagtttgcaatcgtgc 838
>ref|XM_898886.2| PREDICTED: Mus musculus E3 ubiquitin protein ligase, HECT domain containing, 1, transcript variant 9 (Edd1), mRNA Length = 6493 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 408 ctcttgagtttgcaatcgtgc 428 ||||||||||||||||||||| Sbjct: 805 ctcttgagtttgcaatcgtgc 785
>ref|XM_898869.2| PREDICTED: Mus musculus E3 ubiquitin protein ligase, HECT domain containing, 1, transcript variant 5 (Edd1), mRNA Length = 9793 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 408 ctcttgagtttgcaatcgtgc 428 ||||||||||||||||||||| Sbjct: 4102 ctcttgagtttgcaatcgtgc 4082
>ref|XM_196130.7| PREDICTED: Mus musculus E3 ubiquitin protein ligase, HECT domain containing, 1, transcript variant 1 (Edd1), mRNA Length = 9772 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 408 ctcttgagtttgcaatcgtgc 428 ||||||||||||||||||||| Sbjct: 4084 ctcttgagtttgcaatcgtgc 4064
>gb|AC116329.3| Mus musculus BAC clone RP24-290C19 from 5, complete sequence Length = 170072 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 320 gaggagggacagaaggaggaa 340 ||||||||||||||||||||| Sbjct: 282 gaggagggacagaaggaggaa 302
>gb|AC113596.8| Mus musculus chromosome 5, clone RP23-374B20, complete sequence Length = 203500 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 320 gaggagggacagaaggaggaa 340 ||||||||||||||||||||| Sbjct: 17788 gaggagggacagaaggaggaa 17768
>gb|BC047348.1| Mus musculus E3 ubiquitin protein ligase, HECT domain containing, 1, mRNA (cDNA clone IMAGE:4953361) Length = 7763 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 408 ctcttgagtttgcaatcgtgc 428 ||||||||||||||||||||| Sbjct: 2596 ctcttgagtttgcaatcgtgc 2576
>gb|AC012289.12| Homo sapiens chromosome 18, clone RP11-7E6, complete sequence Length = 165022 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 586 aattaatcatttccatgagaa 606 ||||||||||||||||||||| Sbjct: 158574 aattaatcatttccatgagaa 158554
>dbj|AK083545.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, clone:D030042K14 product:PROGESTIN INDUCED PROTEIN homolog [Homo sapiens], full insert sequence Length = 2769 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 408 ctcttgagtttgcaatcgtgc 428 ||||||||||||||||||||| Sbjct: 2226 ctcttgagtttgcaatcgtgc 2206
>gb|AC004828.2|AC004828 Homo sapiens clone DJ0514A23, complete sequence Length = 183249 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 637 agaggctgggaaaaagagagc 657 ||||||||||||||||||||| Sbjct: 38559 agaggctgggaaaaagagagc 38579
>emb|CT025919.8| Zebrafish DNA sequence from clone DKEY-199O23 in linkage group 5, complete sequence Length = 14176 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 323 gagggacagaaggaggaaata 343 ||||||||||||||||||||| Sbjct: 1617 gagggacagaaggaggaaata 1597
>dbj|AK122398.1| Mus musculus mRNA for mKIAA0896 protein Length = 5715 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 408 ctcttgagtttgcaatcgtgc 428 ||||||||||||||||||||| Sbjct: 576 ctcttgagtttgcaatcgtgc 556
>emb|CR932980.12| Zebrafish DNA sequence from clone DKEY-81L13 in linkage group 5, complete sequence Length = 253220 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 323 gagggacagaaggaggaaata 343 ||||||||||||||||||||| Sbjct: 252839 gagggacagaaggaggaaata 252819
>emb|AL392024.3|CNS06C8K Human chromosome 14 DNA sequence BAC R-182E21 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 146235 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 637 agaggctgggaaaaagagagc 657 ||||||||||||||||||||| Sbjct: 72726 agaggctgggaaaaagagagc 72706
>gb|AY722919.2| Borrelia garinii PBi variable plasmid segment G1M1b13a11.r1, WORKING DRAFT SEQUENCE Length = 16203 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 tagtggagagggagatgagc 109 |||||||||||||||||||| Sbjct: 7578 tagtggagagggagatgagc 7597
>ref|XM_513858.1| PREDICTED: Pan troglodytes LOC457367 (LOC457367), mRNA Length = 3395 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 ggagctagtggagagggaga 104 |||||||||||||||||||| Sbjct: 2255 ggagctagtggagagggaga 2274
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 tcgccgccgagcagggcgtc 190 |||||||||||||||||||| Sbjct: 1683049 tcgccgccgagcagggcgtc 1683030
>ref|XM_590378.2| PREDICTED: Bos taurus similar to neurofascin (LOC512796), mRNA Length = 4848 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 cccggaccgcctcctcatcg 215 |||||||||||||||||||| Sbjct: 522 cccggaccgcctcctcatcg 503
>emb|CR376787.10| Zebrafish DNA sequence from clone DKEY-33C9 in linkage group 7, complete sequence Length = 217684 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 571 ggagaaacaaacatcaatta 590 |||||||||||||||||||| Sbjct: 134287 ggagaaacaaacatcaatta 134268
>emb|CR352303.12| Zebrafish DNA sequence from clone CH211-157C9 in linkage group 5, complete sequence Length = 45283 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 565 caaggaggagaaacaaacat 584 |||||||||||||||||||| Sbjct: 33314 caaggaggagaaacaaacat 33295
>emb|CR759843.7| Zebrafish DNA sequence from clone DKEYP-82B4 in linkage group 22, complete sequence Length = 190165 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 565 caaggaggagaaacaaacat 584 |||||||||||||||||||| Sbjct: 56925 caaggaggagaaacaaacat 56944
>emb|Z82173.2|HSB1D7 Human DNA sequence from clone SC22CB-1D7 on chromosome 22, complete sequence Length = 37731 Score = 40.1 bits (20), Expect = 9.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 76 gtgtgccgaggagctagtggagagggag 103 ||||||| |||||||||||| ||||||| Sbjct: 29620 gtgtgcctaggagctagtggggagggag 29593
>emb|AL591543.22| Human DNA sequence from clone RP13-198D9 on chromosome 9 Contains a novel gene (KIAA2015), a novel gene, a tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide (YWHAB) pseudogene and two CpG islands, complete sequence Length = 179501 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 ccgcctcctgctctgcacac 44 |||||||||||||||||||| Sbjct: 120306 ccgcctcctgctctgcacac 120325
>emb|AL139410.20| Human DNA sequence from clone RP11-21N7 on chromosome 1 Contains the FDPS gene for farnesyl diphosphate synthase (farnesyl pyrophosphate synthetase, dimethylallyltranstransferase, geranyltranstransferase), two novel genes, the gene for a novel protein (FLJ35976), the RUSC1 gene for RUN and SH3 domain containing 1, the 3' end of the ASH1L gene for ash1 (absent, small, or homeotic)-like (Drosophila), a POU domain class 5 transcription factor 1 (POU5F1) pseudogene and a CpG island, complete sequence Length = 166288 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 ggagctagtggagagggaga 104 |||||||||||||||||||| Sbjct: 32269 ggagctagtggagagggaga 32250
>gb|AC103453.7| Rattus norvegicus 13 BAC CH230-127N19 (Children's Hospital Oakland Research Institute) complete sequence Length = 199669 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 571 ggagaaacaaacatcaatta 590 |||||||||||||||||||| Sbjct: 111849 ggagaaacaaacatcaatta 111868
>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29 Length = 283100 Score = 40.1 bits (20), Expect = 9.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 130 cgccgctcacgcactccgcgtccgggacctcg 161 |||||| |||| || ||||||||||||||||| Sbjct: 170488 cgccgcccacgaacaccgcgtccgggacctcg 170457 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 tcgccgccgagcagggcgtc 190 |||||||||||||||||||| Sbjct: 39966 tcgccgccgagcagggcgtc 39947
>gb|AC087235.13| Homo sapiens 12 BAC RP11-153K16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 157610 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 644 gggaaaaagagagcagagaa 663 |||||||||||||||||||| Sbjct: 58180 gggaaaaagagagcagagaa 58199
>emb|AL954245.1| Pan troglodytes chromosome 22 clone PTB-047B05 map 22q22.3, complete sequence Length = 176622 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 aaaatgaggtttcaaagaag 391 |||||||||||||||||||| Sbjct: 126907 aaaatgaggtttcaaagaag 126926
>emb|BX897739.8| Zebrafish DNA sequence from clone CH211-160J20 in linkage group 14, complete sequence Length = 162410 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 565 caaggaggagaaacaaacat 584 |||||||||||||||||||| Sbjct: 18774 caaggaggagaaacaaacat 18793
>ref|NM_205110.1| Gallus gallus topoisomerase (DNA) I (TOP1), mRNA Length = 3844 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 560 atgtccaaggaggagaaaca 579 |||||||||||||||||||| Sbjct: 1193 atgtccaaggaggagaaaca 1212
>gb|AC018525.8| Homo sapiens chromosome 8, clone RP11-3J13, complete sequence Length = 150052 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 ggagggacagaaggaggaaa 341 |||||||||||||||||||| Sbjct: 57553 ggagggacagaaggaggaaa 57534
>ref|NM_018489.1| Homo sapiens ash1 (absent, small, or homeotic)-like (Drosophila) (ASH1L), mRNA Length = 9926 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 ggagctagtggagagggaga 104 |||||||||||||||||||| Sbjct: 9371 ggagctagtggagagggaga 9390
>gb|AC113370.2| Homo sapiens chromosome 5 clone RP11-124O5, complete sequence Length = 189590 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 573 agaaacaaacatcaattaat 592 |||||||||||||||||||| Sbjct: 95250 agaaacaaacatcaattaat 95231
>gb|AC109469.2| Homo sapiens chromosome 5 clone RP11-349F8, complete sequence Length = 184776 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 573 agaaacaaacatcaattaat 592 |||||||||||||||||||| Sbjct: 4410 agaaacaaacatcaattaat 4391
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 cctcgccgccgagcagggcg 188 |||||||||||||||||||| Sbjct: 514118 cctcgccgccgagcagggcg 514099
>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome Length = 2685015 Score = 40.1 bits (20), Expect = 9.1 Identities = 32/36 (88%) Strand = Plus / Minus Query: 430 agatgcagatcgtctggatgcaattggtgcgattgg 465 |||||||||||| || ||||| |||||||| ||||| Sbjct: 949244 agatgcagatcgactagatgcgattggtgctattgg 949209
>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome Length = 230138 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 620 aaggacatgatgaagacaga 639 |||||||||||||||||||| Sbjct: 171804 aaggacatgatgaagacaga 171823
>gb|AC010595.7| Homo sapiens chromosome 5 clone CTC-480C2, complete sequence Length = 179484 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 647 aaaaagagagcagagaaaag 666 |||||||||||||||||||| Sbjct: 21447 aaaaagagagcagagaaaag 21466
>gb|AC026700.5| Homo sapiens chromosome 5 clone CTC-534B23, complete sequence Length = 59483 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 647 aaaaagagagcagagaaaag 666 |||||||||||||||||||| Sbjct: 40178 aaaaagagagcagagaaaag 40197
>gb|AF320254.1|AF320254 Azoarcus evansii aerobic 2-aminobenzoate metabolism type II operon, complete sequence Length = 11010 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 160 cgcgctctccctcgccgccgagca 183 ||||||| |||||||||||||||| Sbjct: 7185 cgcgctcgccctcgccgccgagca 7162
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 atggagggagcaagaacagt 505 |||||||||||||||||||| Sbjct: 29019155 atggagggagcaagaacagt 29019174
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 gctctccctcgccgccgagc 182 |||||||||||||||||||| Sbjct: 929465 gctctccctcgccgccgagc 929446
>gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete genome Length = 1308759 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 560 atgtccaaggaggagaaaca 579 |||||||||||||||||||| Sbjct: 1290622 atgtccaaggaggagaaaca 1290603
>gb|AF257305.1|AF257305 Homo sapiens ASH1 mRNA, complete cds Length = 9926 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 ggagctagtggagagggaga 104 |||||||||||||||||||| Sbjct: 9371 ggagctagtggagagggaga 9390
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 gacctcgcgctctccctcgc 174 |||||||||||||||||||| Sbjct: 3526916 gacctcgcgctctccctcgc 3526897
>dbj|AP003726.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0596H10 Length = 166570 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 atggagggagcaagaacagt 505 |||||||||||||||||||| Sbjct: 34142 atggagggagcaagaacagt 34161
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 cctcgccgccgagcagggcg 188 |||||||||||||||||||| Sbjct: 882253 cctcgccgccgagcagggcg 882272
>dbj|AP005354.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1159C3, complete sequence Length = 133276 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 ggagggacagaaggaggaaa 341 |||||||||||||||||||| Sbjct: 9788 ggagggacagaaggaggaaa 9769
>emb|AJ491854.1|OSA491854 Oryza sativa (japonica cultivar-group) partial hkt9 gene for putative sodium transporter, exons 1-3 Length = 2206 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 atggagggagcaagaacagt 505 |||||||||||||||||||| Sbjct: 1964 atggagggagcaagaacagt 1945
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 tcgccgccgagcagggcgtc 190 |||||||||||||||||||| Sbjct: 1968028 tcgccgccgagcagggcgtc 1968047
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 618 tgaaggacatgatgaagaca 637 |||||||||||||||||||| Sbjct: 2025633 tgaaggacatgatgaagaca 2025614
>emb|Z97338.2|ATFCA3 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 3 Length = 200252 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 tttcttggagaggtgggtct 318 |||||||||||||||||||| Sbjct: 23686 tttcttggagaggtgggtct 23705
>emb|AL161540.2|ATCHRIV40 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 40 Length = 197405 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 tttcttggagaggtgggtct 318 |||||||||||||||||||| Sbjct: 169568 tttcttggagaggtgggtct 169587
>emb|AL929165.9| Mouse DNA sequence from clone RP23-446D4 on chromosome 2, complete sequence Length = 181326 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 630 tgaagacagaggctgggaaa 649 |||||||||||||||||||| Sbjct: 123553 tgaagacagaggctgggaaa 123572
>dbj|AB000407.1| Gallus gallus mRNA for DNA topoisomerase I, complete cds Length = 3844 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 560 atgtccaaggaggagaaaca 579 |||||||||||||||||||| Sbjct: 1193 atgtccaaggaggagaaaca 1212
>dbj|AB063083.1| Macaca fascicularis brain cDNA clone:QtrA-14690, full insert sequence Length = 1821 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 ggagctagtggagagggaga 104 |||||||||||||||||||| Sbjct: 836 ggagctagtggagagggaga 855
>emb|AJ492242.1|STU492242 Solanum tuberosum DNA for genomic PstI fragment from 3'end, clone GP219 Length = 538 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 aagaagcttaatgcagagaccact 409 ||||||||||||| |||||||||| Sbjct: 425 aagaagcttaatgaagagaccact 402 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,133,981 Number of Sequences: 3902068 Number of extensions: 6133981 Number of successful extensions: 127281 Number of sequences better than 10.0: 77 Number of HSP's better than 10.0 without gapping: 77 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 126375 Number of HSP's gapped (non-prelim): 899 length of query: 668 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 645 effective length of database: 17,143,297,704 effective search space: 11057427019080 effective search space used: 11057427019080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)