ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd13m18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DOC2B_RAT (P70610) Double C2-like domain-containing protein beta... 31 1.8
2DOC2B_MOUSE (P70169) Double C2-like domain-containing protein be... 31 1.8
3HIS2_METKA (P58835) Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1... 30 3.1
4DOC2B_HUMAN (Q14184) Double C2-like domain-containing protein be... 30 4.1
5WDTC1_MOUSE (Q80ZK9) WD and tetratricopeptide repeats protein 1 30 4.1
6WDTC1_HUMAN (Q8N5D0) WD and tetratricopeptide repeats protein 1 30 4.1

>DOC2B_RAT (P70610) Double C2-like domain-containing protein beta (Doc2-beta)|
          Length = 412

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -3

Query: 516 ISLHLMP--FKRDKSITRTLKRTMNLSYMEA*EXLGKISGNIYRKRLYLSI 370
           + LHL+P   K +K  T+TL+ T+N S+ E     G    ++ RK L +S+
Sbjct: 166 VKLHLLPGASKANKLRTKTLRNTLNPSWNETLTYYGITDEDMIRKTLRISV 216



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>DOC2B_MOUSE (P70169) Double C2-like domain-containing protein beta (Doc2-beta)|
          Length = 412

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -3

Query: 516 ISLHLMP--FKRDKSITRTLKRTMNLSYMEA*EXLGKISGNIYRKRLYLSI 370
           + LHL+P   K +K  T+TL+ T+N S+ E     G    ++ RK L +S+
Sbjct: 166 VKLHLLPGASKANKLRTKTLRNTLNPSWNETLTYYGITDEDMVRKTLRISV 216



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>HIS2_METKA (P58835) Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (PRA-PH)|
          Length = 100

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
 Frame = +1

Query: 307 NVFCTKFIEETSDEVLV*EAGDAEVQPFPVYVSTNL------SQXFLGFHVGEVHCSFQ 465
           N  C K IEE+ + +L  + GD E     VY ST+L         +LG  +GEV   F+
Sbjct: 41  NKICEKIIEESGELILAAKDGDRE---GVVYESTDLIFHVLVLLAYLGIEIGEVFDEFE 96



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>DOC2B_HUMAN (Q14184) Double C2-like domain-containing protein beta (Doc2-beta)|
          Length = 412

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -3

Query: 516 ISLHLMP--FKRDKSITRTLKRTMNLSYMEA*EXLGKISGNIYRKRLYLSI 370
           + LHL+P   K +K  T+TL+ T+N ++ E     G    ++ RK L +S+
Sbjct: 166 VKLHLLPGASKANKLRTKTLRNTLNPTWNETLTYYGITDEDMIRKTLRISV 216



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>WDTC1_MOUSE (Q80ZK9) WD and tetratricopeptide repeats protein 1|
          Length = 677

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +1

Query: 265 NHEVLHKIDIDHLENVFCTKFIEETSDEVLV*EAGDAEVQPFPVYVSTNLSQXFLGFHVG 444
           +H+ L  +   H  N+F  KF+    D +L+  A D++V    + V   +     G H  
Sbjct: 78  HHKKLLSMHTGHTANIFSVKFLPHAGDRILITGAADSKVHVHDLTVKETI--HMFGDHTN 135

Query: 445 EV 450
            V
Sbjct: 136 RV 137



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>WDTC1_HUMAN (Q8N5D0) WD and tetratricopeptide repeats protein 1|
          Length = 677

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +1

Query: 265 NHEVLHKIDIDHLENVFCTKFIEETSDEVLV*EAGDAEVQPFPVYVSTNLSQXFLGFHVG 444
           +H+ L  +   H  N+F  KF+    D +L+  A D++V    + V   +     G H  
Sbjct: 78  HHKKLLSMHTGHTANIFSVKFLPHAGDRILITGAADSKVHVHDLTVKETI--HMFGDHTN 135

Query: 445 EV 450
            V
Sbjct: 136 RV 137


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,902,920
Number of Sequences: 219361
Number of extensions: 1374608
Number of successful extensions: 3587
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3587
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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