ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd13m10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1G168_PARPR (P17053) G surface protein, allelic form 168 precursor 31 2.0
2ZF106_MOUSE (O88466) Zinc finger protein 106 (Zfp-106) (Zinc fin... 29 7.7
3FBXW7_DROME (Q9VZF4) F-box/WD-repeat protein 7 (F-box and WD-40 ... 29 7.7
4JAK2_HUMAN (O60674) Tyrosine-protein kinase JAK2 (EC 2.7.10.2) (... 29 10.0

>G168_PARPR (P17053) G surface protein, allelic form 168 precursor|
          Length = 2704

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
 Frame = +2

Query: 86   CSVGNITGLGAGNICSITMSSSNCTQHTSHQIISFQGIQEGFLQWKYPTKQYCILFS--C 259
            CS    +G GA      T  +S C  HT     +  G    FL W   T+Q C L S  C
Sbjct: 2578 CSWTAASGTGA------TAVASKCATHTCATNQATNGACTRFLNWDKKTQQVCTLVSGAC 2631

Query: 260  KKNNSK*ESINTTRFFGGFLQCWH 331
               +    S N      G+   W+
Sbjct: 2632 TATDPSTLSSNDCFLVSGYTYTWN 2655



to top

>ZF106_MOUSE (O88466) Zinc finger protein 106 (Zfp-106) (Zinc finger protein 474)|
            (H3a minor histocompatibility antigen) (Son of insulin
            receptor mutant)
          Length = 1888

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
 Frame = +2

Query: 170  SHQIISFQGIQEGFLQWKYPTKQYCILFSCKKNNSK*ESINTTR-----FFGGFL 319
            +H+I   QG+QE +   ++P +  C L S ++ NS+ ++   T      FF GFL
Sbjct: 1122 THRIQILQGLQETYEPPEHPDQAPCSLISREQRNSRSQTSFETALLPAPFFPGFL 1176



to top

>FBXW7_DROME (Q9VZF4) F-box/WD-repeat protein 7 (F-box and WD-40 domain protein|
           7) (Protein archipelago)
          Length = 1326

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 19/62 (30%), Positives = 26/62 (41%)
 Frame = +2

Query: 44  CTTGKIYIGISHHLCSVGNITGLGAGNICSITMSSSNCTQHTSHQIISFQGIQEGFLQWK 223
           C+TG   +G S    S    +G GA N C    +S   T   + Q+ +    QE FL   
Sbjct: 560 CSTGSACLGDSQASTSASTSSGAGASNRCQYATTS---TTKAARQVNASAQTQERFLTRS 616

Query: 224 YP 229
            P
Sbjct: 617 NP 618



to top

>JAK2_HUMAN (O60674) Tyrosine-protein kinase JAK2 (EC 2.7.10.2) (Janus kinase|
           2) (JAK-2)
          Length = 1132

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 23/108 (21%)
 Frame = +3

Query: 126 SVQSQCHHPIAHNILVIKLSVS-------------REYKRVFFNGNIQPSNIAFFSHAKR 266
           ++QS CH PI+ +  + KL  +             +++ + F    ++  N+  + H   
Sbjct: 395 NIQSNCHGPISMDFAISKLKKAGNQTGLYVLRCSPKDFNKYFLTFAVERENVIEYKHCLI 454

Query: 267 TT----------VNKNQSTQQDFLGAFYSAGTIRAKMDKGLCLPFTQC 380
           T             KN S+ +D L   Y   T+R+     +   FT+C
Sbjct: 455 TKNENEEYNLSGTKKNFSSLKDLLNC-YQMETVRS---DNIIFQFTKC 498


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,371,009
Number of Sequences: 219361
Number of extensions: 1836397
Number of successful extensions: 4354
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4354
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top