ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd13m08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT017119.1| Zea mays clone EL01N0364D05.c mRNA sequence 214 8e-53
2gb|BT016559.1| Zea mays clone Contig392 mRNA sequence 159 4e-36
3ref|XM_473181.1| Oryza sativa (japonica cultivar-group), predic... 143 2e-31
4dbj|AK099280.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 2e-31
5gb|AY111020.1| Zea mays CL189_1 mRNA sequence 143 2e-31
6dbj|AK059652.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 2e-31
7emb|AL731616.5|OSJN00262 Oryza sativa genomic DNA, chromosome 4,... 141 1e-30
8dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 141 1e-30
9emb|AL731630.2|OSJN00273 Oryza sativa genomic DNA, chromosome 4,... 141 1e-30
10gb|BT018937.1| Zea mays clone Contig81.F mRNA sequence 127 1e-26
11gb|BC111171.1| Bos taurus cDNA clone MGC:134276 IMAGE:8051015, c... 46 0.042
12ref|NM_001038164.1| Bos taurus similar to Lysosomal Pro-X carbox... 46 0.042
13ref|NM_181638.1| Rattus norvegicus T-box 3 (Tbx3), mRNA 42 0.66
14gb|AY289619.1| Rattus norvegicus Tbx3 mRNA, complete cds; altern... 42 0.66
15gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 2.6
16ref|XM_427189.1| PREDICTED: Gallus gallus similar to L-threonine... 40 2.6
17gb|AY324303.1| Lonchura castaneothorax isolate LC57 mitochondria... 40 2.6
18emb|AL023283.6|HS238G2 Human DNA sequence from clone RP1-238G2 o... 40 2.6
19emb|AL590447.1|CNS07EGE chromosome VII of strain GB-M1 of Enceph... 40 2.6
20gb|AC108004.3| Homo sapiens chromosome 17, clone CTD-2348K1, com... 40 2.6
21gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 40 2.6
22gb|AF240580.1|AF240580 Homo sapiens clone 17ptel_2111ctg_drft se... 40 2.6
23gb|AF446141.1| Aegilops tauschii LZ-NBS-LRR class RGA, NBS-LRR c... 40 2.6
24emb|AL844493.6| Mouse DNA sequence from clone RP23-396G18 on chr... 40 2.6 
>gb|BT017119.1| Zea mays clone EL01N0364D05.c mRNA sequence
          Length = 1417

 Score =  214 bits (108), Expect = 8e-53
 Identities = 180/204 (88%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctacgagaacggcggcatctccaccctcggcggcgtccaccccaagaccgtgcccaacaa 60
           |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 979 ctacgagaacggcggcatctccaccctcggcggcgtgcaccccaggaccgtgcccaacaa 920

                                                                       
Query: 61  ccccgacggcaccatggacgtccacaagatcgtcgctgccatcaggcaccgggacggggc 120
           ||||||||||||||||||| ||  || ||||||||  ||||||||| |||  ||||||||
Sbjct: 919 ccccgacggcaccatggacctcgccaggatcgtcggcgccatcaggaaccccgacggggc 860

                                                                       
Query: 121 catgtattatcccaccaccaggctcatctgcctcgagaacacgcatggaaattctggtgg 180
             ||   || || |||||||||||||||||||| |||||||||||||  |||||||||||
Sbjct: 859 gctgctgtacccgaccaccaggctcatctgcctggagaacacgcatgccaattctggtgg 800

                                   
Query: 181 gaaatgtatatctgtagagtacac 204
           ||||||  | ||||||||||||||
Sbjct: 799 gaaatgcttgtctgtagagtacac 776
to top
>gb|BT016559.1| Zea mays clone Contig392 mRNA sequence
          Length = 1322

 Score =  159 bits (80), Expect = 4e-36
 Identities = 164/192 (85%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctacgagaacggcggcatctccaccctcggcggcgtccaccccaagaccgtgcccaacaa 60
           |||||||||||||||||||||||||||||||||||| ||||| ||||||||    |||||
Sbjct: 856 ctacgagaacggcggcatctccaccctcggcggcgtgcaccctaagaccgtcagaaacaa 797

                                                                       
Query: 61  ccccgacggcaccatggacgtccacaagatcgtcgctgccatcaggcaccgggacggggc 120
           | ||||||||||||||||| || |||  ||||||||||| |||||||  |  | ||||| 
Sbjct: 796 ctccgacggcaccatggacatcgacagcatcgtcgctgcaatcaggcctcccggcggggg 737

                                                                       
Query: 121 catgtattatcccaccaccaggctcatctgcctcgagaacacgcatggaaattctggtgg 180
           | |||||||||| |||||||||||||||||| | |||||||| ||||| ||||| || ||
Sbjct: 736 cctgtattatccgaccaccaggctcatctgcttggagaacacacatgggaattccggagg 677

                       
Query: 181 gaaatgtatatc 192
           ||| ||| ||||
Sbjct: 676 gaagtgtttatc 665
to top
>ref|XM_473181.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1119

 Score =  143 bits (72), Expect = 2e-31
 Identities = 153/180 (85%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctacgagaacggcggcatctccaccctcggcggcgtccaccccaagaccgtgcccaacaa 60
           ||||||||||||||| ||||||||| |||||||||||||||||||||||||    |||||
Sbjct: 273 ctacgagaacggcgggatctccaccatcggcggcgtccaccccaagaccgtcaggaacaa 332

                                                                       
Query: 61  ccccgacggcaccatggacgtccacaagatcgtcgctgccatcaggcaccgggacggggc 120
           |||||| || ||||||||| || ||||||| ||||  ||||||||||| | ||| |||||
Sbjct: 333 ccccgatggaaccatggacatcgacaagattgtcgtcgccatcaggcatccggatggggc 392

                                                                       
Query: 121 catgtattatcccaccaccaggctcatctgcctcgagaacacgcatggaaattctggtgg 180
             |||||||||| ||||| ||||| |||||||| ||||| || |||| ||| | ||||||
Sbjct: 393 gctgtattatccgaccacaaggctgatctgcctggagaatacccatgcaaactgtggtgg 452
to top
>dbj|AK099280.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133K04, full
           insert sequence
          Length = 1381

 Score =  143 bits (72), Expect = 2e-31
 Identities = 153/180 (85%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctacgagaacggcggcatctccaccctcggcggcgtccaccccaagaccgtgcccaacaa 60
           ||||||||||||||| ||||||||| |||||||||||||||||||||||||    |||||
Sbjct: 406 ctacgagaacggcgggatctccaccatcggcggcgtccaccccaagaccgtcaggaacaa 465

                                                                       
Query: 61  ccccgacggcaccatggacgtccacaagatcgtcgctgccatcaggcaccgggacggggc 120
           |||||| || ||||||||| || ||||||| ||||  ||||||||||| | ||| |||||
Sbjct: 466 ccccgatggaaccatggacatcgacaagattgtcgtcgccatcaggcatccggatggggc 525

                                                                       
Query: 121 catgtattatcccaccaccaggctcatctgcctcgagaacacgcatggaaattctggtgg 180
             |||||||||| ||||| ||||| |||||||| ||||| || |||| ||| | ||||||
Sbjct: 526 gctgtattatccgaccacaaggctgatctgcctggagaatacccatgcaaactgtggtgg 585
to top
>gb|AY111020.1| Zea mays CL189_1 mRNA sequence
          Length = 1346

 Score =  143 bits (72), Expect = 2e-31
 Identities = 162/192 (84%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctacgagaacggcggcatctccaccctcggcggcgtccaccccaagaccgtgcccaacaa 60
           |||||||||||||||||||||||||||||||||||| ||||| ||||||||    |||||
Sbjct: 174 ctacgagaacggcggcatctccaccctcggcggcgtgcaccctaagaccgtcagaaacaa 233

                                                                       
Query: 61  ccccgacggcaccatggacgtccacaagatcgtcgctgccatcaggcaccgggacggggc 120
           | ||||||||||||||||| || |||  ||||||||||| |||||||  |  | ||| | 
Sbjct: 234 ctccgacggcaccatggacatcgacagcatcgtcgctgcaatcaggcctcccggcggtgg 293

                                                                       
Query: 121 catgtattatcccaccaccaggctcatctgcctcgagaacacgcatggaaattctggtgg 180
           | ||||||| || |||||||||||||||||| | |||||||| ||||| ||||| || ||
Sbjct: 294 cctgtattacccgaccaccaggctcatctgcttggagaacacacatgggaattccggagg 353

                       
Query: 181 gaaatgtatatc 192
           ||| ||| ||||
Sbjct: 354 gaagtgtttatc 365
to top
>dbj|AK059652.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-C08, full
           insert sequence
          Length = 1389

 Score =  143 bits (72), Expect = 2e-31
 Identities = 153/180 (85%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctacgagaacggcggcatctccaccctcggcggcgtccaccccaagaccgtgcccaacaa 60
           ||||||||||||||| ||||||||| |||||||||||||||||||||||||    |||||
Sbjct: 408 ctacgagaacggcgggatctccaccatcggcggcgtccaccccaagaccgtcaggaacaa 467

                                                                       
Query: 61  ccccgacggcaccatggacgtccacaagatcgtcgctgccatcaggcaccgggacggggc 120
           |||||| || ||||||||| || ||||||| ||||  ||||||||||| | ||| |||||
Sbjct: 468 ccccgatggaaccatggacatcgacaagattgtcgtcgccatcaggcatccggatggggc 527

                                                                       
Query: 121 catgtattatcccaccaccaggctcatctgcctcgagaacacgcatggaaattctggtgg 180
             |||||||||| ||||| ||||| |||||||| ||||| || |||| ||| | ||||||
Sbjct: 528 gctgtattatccgaccacaaggctgatctgcctggagaatacccatgcaaactgtggtgg 587
to top
>emb|AL731616.5|OSJN00262 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073E02,
             complete sequence
          Length = 139080

 Score =  141 bits (71), Expect = 1e-30
 Identities = 137/159 (86%)
 Strand = Plus / Minus

                                                                         
Query: 1     ctacgagaacggcggcatctccaccctcggcggcgtccaccccaagaccgtgcccaacaa 60
             ||||||||||||||| ||||||||| |||||||||||||||||||||||||    |||||
Sbjct: 19811 ctacgagaacggcgggatctccaccatcggcggcgtccaccccaagaccgtcaggaacaa 19752

                                                                         
Query: 61    ccccgacggcaccatggacgtccacaagatcgtcgctgccatcaggcaccgggacggggc 120
             |||||| || ||||||||| || ||||||| ||||  ||||||||||| | ||| |||||
Sbjct: 19751 ccccgatggaaccatggacatcgacaagattgtcgtcgccatcaggcatccggatggggc 19692

                                                    
Query: 121   catgtattatcccaccaccaggctcatctgcctcgagaa 159
               |||||||||| ||||| ||||| |||||||| |||||
Sbjct: 19691 gctgtattatccgaccacaaggctgatctgcctggagaa 19653
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  141 bits (71), Expect = 1e-30
 Identities = 137/159 (86%)
 Strand = Plus / Minus

                                                                            
Query: 1        ctacgagaacggcggcatctccaccctcggcggcgtccaccccaagaccgtgcccaacaa 60
                ||||||||||||||| ||||||||| |||||||||||||||||||||||||    |||||
Sbjct: 25802401 ctacgagaacggcgggatctccaccatcggcggcgtccaccccaagaccgtcaggaacaa 25802342

                                                                            
Query: 61       ccccgacggcaccatggacgtccacaagatcgtcgctgccatcaggcaccgggacggggc 120
                |||||| || ||||||||| || ||||||| ||||  ||||||||||| | ||| |||||
Sbjct: 25802341 ccccgatggaaccatggacatcgacaagattgtcgtcgccatcaggcatccggatggggc 25802282

                                                       
Query: 121      catgtattatcccaccaccaggctcatctgcctcgagaa 159
                  |||||||||| ||||| ||||| |||||||| |||||
Sbjct: 25802281 gctgtattatccgaccacaaggctgatctgcctggagaa 25802243
to top
>emb|AL731630.2|OSJN00273 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0072M01,
              complete sequence
          Length = 127712

 Score =  141 bits (71), Expect = 1e-30
 Identities = 137/159 (86%)
 Strand = Plus / Minus

                                                                          
Query: 1      ctacgagaacggcggcatctccaccctcggcggcgtccaccccaagaccgtgcccaacaa 60
              ||||||||||||||| ||||||||| |||||||||||||||||||||||||    |||||
Sbjct: 125327 ctacgagaacggcgggatctccaccatcggcggcgtccaccccaagaccgtcaggaacaa 125268

                                                                          
Query: 61     ccccgacggcaccatggacgtccacaagatcgtcgctgccatcaggcaccgggacggggc 120
              |||||| || ||||||||| || ||||||| ||||  ||||||||||| | ||| |||||
Sbjct: 125267 ccccgatggaaccatggacatcgacaagattgtcgtcgccatcaggcatccggatggggc 125208

                                                     
Query: 121    catgtattatcccaccaccaggctcatctgcctcgagaa 159
                |||||||||| ||||| ||||| |||||||| |||||
Sbjct: 125207 gctgtattatccgaccacaaggctgatctgcctggagaa 125169
to top
>gb|BT018937.1| Zea mays clone Contig81.F mRNA sequence
          Length = 1352

 Score =  127 bits (64), Expect = 1e-26
 Identities = 97/108 (89%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctacgagaacggcggcatctccaccctcggcggcgtccaccccaagaccgtgcccaacaa 60
           ||||||||||||||||||||||||| |||||||||| ||||||| |||||||   |||||
Sbjct: 372 ctacgagaacggcggcatctccaccatcggcggcgtgcaccccaggaccgtgaagaacaa 431

                                                           
Query: 61  ccccgacggcaccatggacgtccacaagatcgtcgctgccatcaggca 108
           ||||||||||||||||||  || |||||||||| || |||||||||||
Sbjct: 432 ccccgacggcaccatggatatcgacaagatcgttgccgccatcaggca 479
to top
>gb|BC111171.1| Bos taurus cDNA clone MGC:134276 IMAGE:8051015, complete cds
          Length = 2229

 Score = 46.1 bits (23), Expect = 0.042
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 16 catctccaccctcggcggcgtcc 38
          |||||||||||||||||||||||
Sbjct: 23 catctccaccctcggcggcgtcc 1
to top
>ref|NM_001038164.1| Bos taurus similar to Lysosomal Pro-X carboxypeptidase precursor
          (Prolylcarboxypeptidase) (PRCP) (Proline
          carboxypeptidase) (Angiotensinase C) (Lysosomal
          carboxypeptidase C) (MGC134276), mRNA
          Length = 2229

 Score = 46.1 bits (23), Expect = 0.042
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 16 catctccaccctcggcggcgtcc 38
          |||||||||||||||||||||||
Sbjct: 23 catctccaccctcggcggcgtcc 1
to top
>ref|NM_181638.1| Rattus norvegicus T-box 3 (Tbx3), mRNA
          Length = 2232

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 95   gctgccatcaggcaccgggacgggg 119
            ||||| |||||||||||||||||||
Sbjct: 1959 gctgctatcaggcaccgggacgggg 1935
to top
>gb|AY289619.1| Rattus norvegicus Tbx3 mRNA, complete cds; alternatively spliced
          Length = 2232

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 95   gctgccatcaggcaccgggacgggg 119
            ||||| |||||||||||||||||||
Sbjct: 1959 gctgctatcaggcaccgggacgggg 1935
to top
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 59     aaccccgacggcaccatggacgtc 82
              ||||||||||||||||| ||||||
Sbjct: 635279 aaccccgacggcaccatcgacgtc 635302
to top
>ref|XM_427189.1| PREDICTED: Gallus gallus similar to L-threonine aldolase
           (LOC429635), mRNA
          Length = 618

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 142 gctcatctgcctcgagaacacgca 165
           |||||||||||| |||||||||||
Sbjct: 345 gctcatctgcctggagaacacgca 368
to top
>gb|AY324303.1| Lonchura castaneothorax isolate LC57 mitochondrial NADH
           dehydrogenase subunit 6 (ND6) gene, partial cds;
           tRNA-Glu gene, complete sequence; and control region,
           partial sequence
          Length = 1101

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 41  cccaagaccgtgcccaacaacccc 64
           ||||||||||| ||||||||||||
Sbjct: 196 cccaagaccgtacccaacaacccc 219
to top
>emb|AL023283.6|HS238G2 Human DNA sequence from clone RP1-238G2 on chromosome 6q23.2-25.2,
             complete sequence
          Length = 118904

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 171   attctggtgggaaatgtata 190
             ||||||||||||||||||||
Sbjct: 23647 attctggtgggaaatgtata 23666
to top
>emb|AL590447.1|CNS07EGE chromosome VII of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 226576

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 72     ccatggacgtccacaagatcgtcgctgccatc 103
              ||||||||||||| ||||| |||| |||||||
Sbjct: 111687 ccatggacgtccagaagatagtcgatgccatc 111718
to top
>gb|AC108004.3| Homo sapiens chromosome 17, clone CTD-2348K1, complete sequence
          Length = 116762

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   ggtgggaaatgtatatctgt 195
             ||||||||||||||||||||
Sbjct: 19314 ggtgggaaatgtatatctgt 19333
to top
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 49     cgtgcccaacaaccccgacggcac 72
              ||||||||||||| ||||||||||
Sbjct: 280257 cgtgcccaacaacaccgacggcac 280234



 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     tcgtcgctgccatcaggcac 109
              ||||||||||||||||||||
Sbjct: 117337 tcgtcgctgccatcaggcac 117356
to top
>gb|AF240580.1|AF240580 Homo sapiens clone 17ptel_2111ctg_drft sequence
          Length = 82360

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   ggtgggaaatgtatatctgt 195
             ||||||||||||||||||||
Sbjct: 39050 ggtgggaaatgtatatctgt 39031
to top
>gb|AF446141.1| Aegilops tauschii LZ-NBS-LRR class RGA, NBS-LRR class RGA, HCBT-like
             putative defense response protein, and putative alliin
             lyase genes, complete cds; and unknown genes
          Length = 106618

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 52    gcccaacaaccccgacggcaccat 75
             ||||||||||||||||||| ||||
Sbjct: 93606 gcccaacaaccccgacggcgccat 93629
to top
>emb|AL844493.6| Mouse DNA sequence from clone RP23-396G18 on chromosome 2, complete
            sequence
          Length = 166025

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 172  ttctggtgggaaatgtatat 191
            ||||||||||||||||||||
Sbjct: 6397 ttctggtgggaaatgtatat 6416


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,289,923
Number of Sequences: 3902068
Number of extensions: 1289923
Number of successful extensions: 88868
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88684
Number of HSP's gapped (non-prelim): 174
length of query: 205
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 183
effective length of database: 17,147,199,772
effective search space: 3137937558276
effective search space used: 3137937558276
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top