ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd14b03 |
|---|---|
| Clone Library Name | barley_pub |
>IE18_PRVKA (P33479) Immediate-early protein IE180| Length = 1446 Score = 30.0 bits (66), Expect = 2.4 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +3 Query: 18 HGHGDLLTSTVQPVVPNAGHAM 83 HGHG +T +V P +P+ G AM Sbjct: 585 HGHGSFITGSVTPPLPHIGDAM 606
>IE18_PRVIF (P11675) Immediate-early protein IE180| Length = 1461 Score = 30.0 bits (66), Expect = 2.4 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +3 Query: 18 HGHGDLLTSTVQPVVPNAGHAM 83 HGHG +T +V P +P+ G AM Sbjct: 596 HGHGSFITGSVTPPLPHIGDAM 617
>MURG_YERPS (Q66EK5) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 356 Score = 29.6 bits (65), Expect = 3.1 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = -1 Query: 110 GAPCLLHRWHGVAGVRNDGLYRTSKQVAMA 21 G P +LH +G+AG+ N L R +K+V A Sbjct: 118 GVPVVLHEQNGIAGLTNRWLARIAKKVLQA 147
>MURG_YERPE (Q8ZIE9) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 356 Score = 29.6 bits (65), Expect = 3.1 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = -1 Query: 110 GAPCLLHRWHGVAGVRNDGLYRTSKQVAMA 21 G P +LH +G+AG+ N L R +K+V A Sbjct: 118 GVPVVLHEQNGIAGLTNRWLARIAKKVLQA 147
>T22D4_HUMAN (Q9Y3Q8) TSC22 domain family protein 4 (TSC22-related-inducible| leucine zipper protein 2) (Tsc-22-like protein THG-1) Length = 395 Score = 28.1 bits (61), Expect = 9.0 Identities = 18/40 (45%), Positives = 19/40 (47%), Gaps = 6/40 (15%) Frame = +1 Query: 223 ASRGATGRVPWERCAARSRAFGSP------SSRPTSWLRP 324 AS GA GR R S G+P S PTSWLRP Sbjct: 115 ASGGAGGRSLDSRLELASLGLGAPTPPSGLSQGPTSWLRP 154
>GUX1_PENJA (Q06886) Exoglucanase 1 precursor (EC 3.2.1.91) (Exoglucanase I)| (Exocellobiohydrolase I) (1,4-beta-cellobiohydrolase) Length = 537 Score = 28.1 bits (61), Expect = 9.0 Identities = 26/103 (25%), Positives = 31/103 (30%), Gaps = 11/103 (10%) Frame = -2 Query: 289 SRRPSSAQHTFPMA----------PFRWRHATLTTSSLSPAPVTLTSIXXXXXXXXXXXX 140 SRRP++ + T+P A P TTSS S T S Sbjct: 430 SRRPNTVESTYPNAYVIYSNIKTGPLNSTFTGGTTSSSSTTTTTSKSTSTSSSSKTTTTV 489 Query: 139 XXXXXXGNDMGLLVFFTGGMAWPAFGTTGCT-VLVSRSPWPCT 14 G TG W G G T SP+ CT Sbjct: 490 TTTTTSSGSSG-----TGARDWAQCGGNGWTGPTTCVSPYTCT 527
>NTP2_VARV (P33051) Nucleoside triphosphatase II (EC 3.6.1.15) (NTPase II)| (Nucleoside triphosphate phosphohydrolase II) (NPH II) (RNA helicase I8) Length = 676 Score = 28.1 bits (61), Expect = 9.0 Identities = 9/24 (37%), Positives = 15/24 (62%) Frame = -1 Query: 104 PCLLHRWHGVAGVRNDGLYRTSKQ 33 P + HRWH V++ G+Y+ S + Sbjct: 44 PVIKHRWHNAHVVKHKGIYKVSTE 67
>NTP2_VACCV (P12927) Nucleoside triphosphatase II (EC 3.6.1.15) (NTPase II)| (Nucleoside triphosphate phosphohydrolase II) (NPH II) (RNA helicase I8) Length = 676 Score = 28.1 bits (61), Expect = 9.0 Identities = 9/24 (37%), Positives = 15/24 (62%) Frame = -1 Query: 104 PCLLHRWHGVAGVRNDGLYRTSKQ 33 P + HRWH V++ G+Y+ S + Sbjct: 44 PVIKHRWHNAHVVKHKGIYKVSTE 67
>NTP2_VACCT (Q9JFC3) Nucleoside triphosphatase II (EC 3.6.1.15) (NTPase II)| (Nucleoside triphosphate phosphohydrolase II) (NPH II) (RNA helicase I8) Length = 676 Score = 28.1 bits (61), Expect = 9.0 Identities = 9/24 (37%), Positives = 15/24 (62%) Frame = -1 Query: 104 PCLLHRWHGVAGVRNDGLYRTSKQ 33 P + HRWH V++ G+Y+ S + Sbjct: 44 PVIKHRWHNAHVVKHKGIYKVSTE 67
>NTP2_VACCC (P20502) Nucleoside triphosphatase II (EC 3.6.1.15) (NTPase II)| (Nucleoside triphosphate phosphohydrolase II) (NPH II) (RNA helicase I8) Length = 676 Score = 28.1 bits (61), Expect = 9.0 Identities = 9/24 (37%), Positives = 15/24 (62%) Frame = -1 Query: 104 PCLLHRWHGVAGVRNDGLYRTSKQ 33 P + HRWH V++ G+Y+ S + Sbjct: 44 PVIKHRWHNAHVVKHKGIYKVSTE 67
>NTP2_VACCA (O57193) Nucleoside triphosphatase II (EC 3.6.1.15) (NTPase II)| (Nucleoside triphosphate phosphohydrolase II) (NPH II) (RNA helicase I8) Length = 676 Score = 28.1 bits (61), Expect = 9.0 Identities = 9/24 (37%), Positives = 15/24 (62%) Frame = -1 Query: 104 PCLLHRWHGVAGVRNDGLYRTSKQ 33 P + HRWH V++ G+Y+ S + Sbjct: 44 PVIKHRWHNAHVVKHKGIYKVSTE 67 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,513,956 Number of Sequences: 219361 Number of extensions: 1146921 Number of successful extensions: 4109 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 3990 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4102 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
