ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd14a24 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190891.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2409 Score = 79.8 bits (40), Expect = 1e-11 Identities = 115/140 (82%) Strand = Plus / Plus Query: 19 actgggatatggccggagtcaagaagcttcagtgacaaagggtacgggccaataccatca 78 ||||| |||||||||||||| ||||||||||| ||| |||| |||||||| | || || Sbjct: 619 actggtatatggccggagtcgagaagcttcagcgacgaaggttacgggccggtgccggca 678 Query: 79 aggtggaaaggaaagtgccaagtcgggccagactggggcatcaataattgcagccgcaag 138 |||||||||| |||||| ||||| || ||||||| ||| || |||||||||||| Sbjct: 679 cggtggaaaggcgtgtgccaggtcggcgaaggatggggcagcaacaactgcagccgcaag 738 Query: 139 atcatcggcgcaaggttcta 158 ||||||||||| ||||||| Sbjct: 739 atcatcggcgcgcggttcta 758 Score = 42.1 bits (21), Expect = 2.1 Identities = 97/120 (80%), Gaps = 3/120 (2%) Strand = Plus / Plus Query: 387 cgtgctagccgccatcgacgatgcgatctatgatggagtagacgtcttgtctctctccct 446 |||||| |||||||||||||| |||||| | || || || ||||| |||| |||||||| Sbjct: 990 cgtgctggccgccatcgacgacgcgatccacgacggcgtggacgtgctgtcgctctccct 1049 Query: 447 cggtgtcccgggcgagaactcttttggtgctctgcacgccgttcaaaaggggatcaccgt 506 || | ||| | |||||||| || || || | ||||||||| || |||||||||||||| Sbjct: 1050 -ggggaccctg--gagaactccttcggcgcgcagcacgccgtccagaaggggatcaccgt 1106
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 75.8 bits (38), Expect = 1e-10 Identities = 110/134 (82%) Strand = Plus / Plus Query: 25 atatggccggagtcaagaagcttcagtgacaaagggtacgggccaataccatcaaggtgg 84 |||||||||||||| ||||||||||| ||| |||| |||||||| | || || ||||| Sbjct: 33669746 atatggccggagtcgagaagcttcagcgacgaaggttacgggccggtgccggcacggtgg 33669805 Query: 85 aaaggaaagtgccaagtcgggccagactggggcatcaataattgcagccgcaagatcatc 144 ||||| |||||| ||||| || ||||||| ||| || |||||||||||||||||| Sbjct: 33669806 aaaggcgtgtgccaggtcggcgaaggatggggcagcaacaactgcagccgcaagatcatc 33669865 Query: 145 ggcgcaaggttcta 158 ||||| ||||||| Sbjct: 33669866 ggcgcgcggttcta 33669879 Score = 73.8 bits (37), Expect = 6e-10 Identities = 112/137 (81%) Strand = Plus / Plus Query: 22 gggatatggccggagtcaagaagcttcagtgacaaagggtacgggccaataccatcaagg 81 ||||||||||||||||||||||| ||||| ||| |||| |||||||| | || || || Sbjct: 33663306 gggatatggccggagtcaagaagtttcagcgacgaaggatacgggccggtgccggcacgg 33663365 Query: 82 tggaaaggaaagtgccaagtcgggccagactggggcatcaataattgcagccgcaagatc 141 ||||| || |||||| ||||| || ||||||| ||| || ||||||||||||||| Sbjct: 33663366 tggaagggcgtgtgccaggtcggagaaggatggggcagcaacaactgcagccgcaagatc 33663425 Query: 142 atcggcgcaaggttcta 158 |||||||| ||||||| Sbjct: 33663426 atcggcgcgcggttcta 33663442 Score = 65.9 bits (33), Expect = 1e-07 Identities = 111/137 (81%) Strand = Plus / Plus Query: 22 gggatatggccggagtcaagaagcttcagtgacaaagggtacgggccaataccatcaagg 81 ||||||||||||||||| ||||||||| | ||| ||||||||||||| | || || || Sbjct: 33654008 gggatatggccggagtcgagaagcttccgcgacgaagggtacgggccggtgccggcacgg 33654067 Query: 82 tggaaaggaaagtgccaagtcgggccagactggggcatcaataattgcagccgcaagatc 141 ||||| || ||| || ||||| || ||||||| ||| || ||||||||||||||| Sbjct: 33654068 tggaagggcgtgtgtcaggtcggagaaggatggggcagcaacaactgcagccgcaagatc 33654127 Query: 142 atcggcgcaaggttcta 158 |||||||| ||||||| Sbjct: 33654128 atcggcgcgcggttcta 33654144 Score = 61.9 bits (31), Expect = 2e-06 Identities = 115/143 (80%) Strand = Plus / Plus Query: 460 gagaactcttttggtgctctgcacgccgttcaaaaggggatcaccgtcgtgtacacggcc 519 |||||||| || || || ||||||||||| || ||||||||||||||||||||| | || Sbjct: 33663741 gagaactcgttcggcgcgctgcacgccgtccagaaggggatcaccgtcgtgtacgccgca 33663800 Query: 520 ggcaacaatggccccataccacagacggttgggaacacttcgccgtgggtcatcacggtg 579 || ||| ||| || | || ||| |||||||||||| | || ||||||||||| || Sbjct: 33663801 gggaactctggacctgtgccgcaggtggttgggaacacggctccatgggtcatcacagtc 33663860 Query: 580 gcagcaaccaaggttgatcggtc 602 ||||||| |||| | |||||||| Sbjct: 33663861 gcagcaagcaagatcgatcggtc 33663883 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 460 gagaactcttttggtgctctgcacgccgttcaaaaggggatcaccgtcgtgtac 513 |||||||| || || || ||||||||||| || |||||||||||||| |||||| Sbjct: 33654443 gagaactcgttcggcgcgctgcacgccgtccagaaggggatcaccgttgtgtac 33654496 Score = 46.1 bits (23), Expect = 0.13 Identities = 44/51 (86%) Strand = Plus / Plus Query: 28 tggccggagtcaagaagcttcagtgacaaagggtacgggccaataccatca 78 ||||| || ||||||||||||||||| | || ||||| |||||||||||| Sbjct: 33686932 tggcctgaatcaagaagcttcagtgatcatggatacggaccaataccatca 33686982 Score = 42.1 bits (21), Expect = 2.1 Identities = 97/120 (80%), Gaps = 3/120 (2%) Strand = Plus / Plus Query: 387 cgtgctagccgccatcgacgatgcgatctatgatggagtagacgtcttgtctctctccct 446 |||||| |||||||||||||| |||||| | || || || ||||| |||| |||||||| Sbjct: 33670111 cgtgctggccgccatcgacgacgcgatccacgacggcgtggacgtgctgtcgctctccct 33670170 Query: 447 cggtgtcccgggcgagaactcttttggtgctctgcacgccgttcaaaaggggatcaccgt 506 || | ||| | |||||||| || || || | ||||||||| || |||||||||||||| Sbjct: 33670171 -ggggaccctg--gagaactccttcggcgcgcagcacgccgtccagaaggggatcaccgt 33670227
>dbj|AP003299.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0699H05 Length = 144850 Score = 75.8 bits (38), Expect = 1e-10 Identities = 110/134 (82%) Strand = Plus / Plus Query: 25 atatggccggagtcaagaagcttcagtgacaaagggtacgggccaataccatcaaggtgg 84 |||||||||||||| ||||||||||| ||| |||| |||||||| | || || ||||| Sbjct: 22816 atatggccggagtcgagaagcttcagcgacgaaggttacgggccggtgccggcacggtgg 22875 Query: 85 aaaggaaagtgccaagtcgggccagactggggcatcaataattgcagccgcaagatcatc 144 ||||| |||||| ||||| || ||||||| ||| || |||||||||||||||||| Sbjct: 22876 aaaggcgtgtgccaggtcggcgaaggatggggcagcaacaactgcagccgcaagatcatc 22935 Query: 145 ggcgcaaggttcta 158 ||||| ||||||| Sbjct: 22936 ggcgcgcggttcta 22949 Score = 73.8 bits (37), Expect = 6e-10 Identities = 112/137 (81%) Strand = Plus / Plus Query: 22 gggatatggccggagtcaagaagcttcagtgacaaagggtacgggccaataccatcaagg 81 ||||||||||||||||||||||| ||||| ||| |||| |||||||| | || || || Sbjct: 16376 gggatatggccggagtcaagaagtttcagcgacgaaggatacgggccggtgccggcacgg 16435 Query: 82 tggaaaggaaagtgccaagtcgggccagactggggcatcaataattgcagccgcaagatc 141 ||||| || |||||| ||||| || ||||||| ||| || ||||||||||||||| Sbjct: 16436 tggaagggcgtgtgccaggtcggagaaggatggggcagcaacaactgcagccgcaagatc 16495 Query: 142 atcggcgcaaggttcta 158 |||||||| ||||||| Sbjct: 16496 atcggcgcgcggttcta 16512 Score = 65.9 bits (33), Expect = 1e-07 Identities = 111/137 (81%) Strand = Plus / Plus Query: 22 gggatatggccggagtcaagaagcttcagtgacaaagggtacgggccaataccatcaagg 81 ||||||||||||||||| ||||||||| | ||| ||||||||||||| | || || || Sbjct: 7078 gggatatggccggagtcgagaagcttccgcgacgaagggtacgggccggtgccggcacgg 7137 Query: 82 tggaaaggaaagtgccaagtcgggccagactggggcatcaataattgcagccgcaagatc 141 ||||| || ||| || ||||| || ||||||| ||| || ||||||||||||||| Sbjct: 7138 tggaagggcgtgtgtcaggtcggagaaggatggggcagcaacaactgcagccgcaagatc 7197 Query: 142 atcggcgcaaggttcta 158 |||||||| ||||||| Sbjct: 7198 atcggcgcgcggttcta 7214 Score = 61.9 bits (31), Expect = 2e-06 Identities = 115/143 (80%) Strand = Plus / Plus Query: 460 gagaactcttttggtgctctgcacgccgttcaaaaggggatcaccgtcgtgtacacggcc 519 |||||||| || || || ||||||||||| || ||||||||||||||||||||| | || Sbjct: 16811 gagaactcgttcggcgcgctgcacgccgtccagaaggggatcaccgtcgtgtacgccgca 16870 Query: 520 ggcaacaatggccccataccacagacggttgggaacacttcgccgtgggtcatcacggtg 579 || ||| ||| || | || ||| |||||||||||| | || ||||||||||| || Sbjct: 16871 gggaactctggacctgtgccgcaggtggttgggaacacggctccatgggtcatcacagtc 16930 Query: 580 gcagcaaccaaggttgatcggtc 602 ||||||| |||| | |||||||| Sbjct: 16931 gcagcaagcaagatcgatcggtc 16953 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 460 gagaactcttttggtgctctgcacgccgttcaaaaggggatcaccgtcgtgtac 513 |||||||| || || || ||||||||||| || |||||||||||||| |||||| Sbjct: 7513 gagaactcgttcggcgcgctgcacgccgtccagaaggggatcaccgttgtgtac 7566 Score = 46.1 bits (23), Expect = 0.13 Identities = 44/51 (86%) Strand = Plus / Plus Query: 28 tggccggagtcaagaagcttcagtgacaaagggtacgggccaataccatca 78 ||||| || ||||||||||||||||| | || ||||| |||||||||||| Sbjct: 40002 tggcctgaatcaagaagcttcagtgatcatggatacggaccaataccatca 40052 Score = 42.1 bits (21), Expect = 2.1 Identities = 97/120 (80%), Gaps = 3/120 (2%) Strand = Plus / Plus Query: 387 cgtgctagccgccatcgacgatgcgatctatgatggagtagacgtcttgtctctctccct 446 |||||| |||||||||||||| |||||| | || || || ||||| |||| |||||||| Sbjct: 23181 cgtgctggccgccatcgacgacgcgatccacgacggcgtggacgtgctgtcgctctccct 23240 Query: 447 cggtgtcccgggcgagaactcttttggtgctctgcacgccgttcaaaaggggatcaccgt 506 || | ||| | |||||||| || || || | ||||||||| || |||||||||||||| Sbjct: 23241 -ggggaccctg--gagaactccttcggcgcgcagcacgccgtccagaaggggatcaccgt 23297
>ref|NM_190890.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2043 Score = 73.8 bits (37), Expect = 6e-10 Identities = 112/137 (81%) Strand = Plus / Plus Query: 22 gggatatggccggagtcaagaagcttcagtgacaaagggtacgggccaataccatcaagg 81 ||||||||||||||||||||||| ||||| ||| |||| |||||||| | || || || Sbjct: 268 gggatatggccggagtcaagaagtttcagcgacgaaggatacgggccggtgccggcacgg 327 Query: 82 tggaaaggaaagtgccaagtcgggccagactggggcatcaataattgcagccgcaagatc 141 ||||| || |||||| ||||| || ||||||| ||| || ||||||||||||||| Sbjct: 328 tggaagggcgtgtgccaggtcggagaaggatggggcagcaacaactgcagccgcaagatc 387 Query: 142 atcggcgcaaggttcta 158 |||||||| ||||||| Sbjct: 388 atcggcgcgcggttcta 404 Score = 61.9 bits (31), Expect = 2e-06 Identities = 115/143 (80%) Strand = Plus / Plus Query: 460 gagaactcttttggtgctctgcacgccgttcaaaaggggatcaccgtcgtgtacacggcc 519 |||||||| || || || ||||||||||| || ||||||||||||||||||||| | || Sbjct: 703 gagaactcgttcggcgcgctgcacgccgtccagaaggggatcaccgtcgtgtacgccgca 762 Query: 520 ggcaacaatggccccataccacagacggttgggaacacttcgccgtgggtcatcacggtg 579 || ||| ||| || | || ||| |||||||||||| | || ||||||||||| || Sbjct: 763 gggaactctggacctgtgccgcaggtggttgggaacacggctccatgggtcatcacagtc 822 Query: 580 gcagcaaccaaggttgatcggtc 602 ||||||| |||| | |||||||| Sbjct: 823 gcagcaagcaagatcgatcggtc 845
>gb|AF200467.1|AF200467 Oryza sativa subtilase mRNA, complete cds Length = 2545 Score = 73.8 bits (37), Expect = 6e-10 Identities = 112/137 (81%) Strand = Plus / Plus Query: 22 gggatatggccggagtcaagaagcttcagtgacaaagggtacgggccaataccatcaagg 81 ||||||||||||||||||||||| ||||| ||| |||| |||||||| | || || || Sbjct: 440 gggatatggccggagtcaagaagtttcagcgacgaaggatacgggccggtgccggcacgg 499 Query: 82 tggaaaggaaagtgccaagtcgggccagactggggcatcaataattgcagccgcaagatc 141 ||||| || |||||| ||||| || ||||||| ||| || ||||||||||||||| Sbjct: 500 tggaagggcgtgtgccaggtcggagaaggatggggcagcaacaactgcagccgcaagatc 559 Query: 142 atcggcgcaaggttcta 158 |||||||| ||||||| Sbjct: 560 atcggcgcgcggttcta 576 Score = 61.9 bits (31), Expect = 2e-06 Identities = 115/143 (80%) Strand = Plus / Plus Query: 460 gagaactcttttggtgctctgcacgccgttcaaaaggggatcaccgtcgtgtacacggcc 519 |||||||| || || || ||||||||||| || ||||||||||||||||||||| | || Sbjct: 875 gagaactcgttcggcgcgctgcacgccgtccagaaggggatcaccgtcgtgtacgccgca 934 Query: 520 ggcaacaatggccccataccacagacggttgggaacacttcgccgtgggtcatcacggtg 579 || ||| ||| || | || ||| |||||||||||| | || ||||||||||| || Sbjct: 935 gggaactctggacctgtgccgcaggtggttgggaacacggctccatgggtcatcacagtc 994 Query: 580 gcagcaaccaaggttgatcggtc 602 ||||||| |||| | |||||||| Sbjct: 995 gcagcaagcaagatcgatcggtc 1017
>dbj|AP003290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0684C02 Length = 80086 Score = 73.8 bits (37), Expect = 6e-10 Identities = 112/137 (81%) Strand = Plus / Plus Query: 22 gggatatggccggagtcaagaagcttcagtgacaaagggtacgggccaataccatcaagg 81 ||||||||||||||||||||||| ||||| ||| |||| |||||||| | || || || Sbjct: 78178 gggatatggccggagtcaagaagtttcagcgacgaaggatacgggccggtgccggcacgg 78237 Query: 82 tggaaaggaaagtgccaagtcgggccagactggggcatcaataattgcagccgcaagatc 141 ||||| || |||||| ||||| || ||||||| ||| || ||||||||||||||| Sbjct: 78238 tggaagggcgtgtgccaggtcggagaaggatggggcagcaacaactgcagccgcaagatc 78297 Query: 142 atcggcgcaaggttcta 158 |||||||| ||||||| Sbjct: 78298 atcggcgcgcggttcta 78314 Score = 65.9 bits (33), Expect = 1e-07 Identities = 111/137 (81%) Strand = Plus / Plus Query: 22 gggatatggccggagtcaagaagcttcagtgacaaagggtacgggccaataccatcaagg 81 ||||||||||||||||| ||||||||| | ||| ||||||||||||| | || || || Sbjct: 68880 gggatatggccggagtcgagaagcttccgcgacgaagggtacgggccggtgccggcacgg 68939 Query: 82 tggaaaggaaagtgccaagtcgggccagactggggcatcaataattgcagccgcaagatc 141 ||||| || ||| || ||||| || ||||||| ||| || ||||||||||||||| Sbjct: 68940 tggaagggcgtgtgtcaggtcggagaaggatggggcagcaacaactgcagccgcaagatc 68999 Query: 142 atcggcgcaaggttcta 158 |||||||| ||||||| Sbjct: 69000 atcggcgcgcggttcta 69016 Score = 61.9 bits (31), Expect = 2e-06 Identities = 115/143 (80%) Strand = Plus / Plus Query: 460 gagaactcttttggtgctctgcacgccgttcaaaaggggatcaccgtcgtgtacacggcc 519 |||||||| || || || ||||||||||| || ||||||||||||||||||||| | || Sbjct: 78613 gagaactcgttcggcgcgctgcacgccgtccagaaggggatcaccgtcgtgtacgccgca 78672 Query: 520 ggcaacaatggccccataccacagacggttgggaacacttcgccgtgggtcatcacggtg 579 || ||| ||| || | || ||| |||||||||||| | || ||||||||||| || Sbjct: 78673 gggaactctggacctgtgccgcaggtggttgggaacacggctccatgggtcatcacagtc 78732 Query: 580 gcagcaaccaaggttgatcggtc 602 ||||||| |||| | |||||||| Sbjct: 78733 gcagcaagcaagatcgatcggtc 78755 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 460 gagaactcttttggtgctctgcacgccgttcaaaaggggatcaccgtcgtgtac 513 |||||||| || || || ||||||||||| || |||||||||||||| |||||| Sbjct: 69315 gagaactcgttcggcgcgctgcacgccgtccagaaggggatcaccgttgtgtac 69368
>ref|NM_190888.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2214 Score = 65.9 bits (33), Expect = 1e-07 Identities = 111/137 (81%) Strand = Plus / Plus Query: 22 gggatatggccggagtcaagaagcttcagtgacaaagggtacgggccaataccatcaagg 81 ||||||||||||||||| ||||||||| | ||| ||||||||||||| | || || || Sbjct: 436 gggatatggccggagtcgagaagcttccgcgacgaagggtacgggccggtgccggcacgg 495 Query: 82 tggaaaggaaagtgccaagtcgggccagactggggcatcaataattgcagccgcaagatc 141 ||||| || ||| || ||||| || ||||||| ||| || ||||||||||||||| Sbjct: 496 tggaagggcgtgtgtcaggtcggagaaggatggggcagcaacaactgcagccgcaagatc 555 Query: 142 atcggcgcaaggttcta 158 |||||||| ||||||| Sbjct: 556 atcggcgcgcggttcta 572 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 460 gagaactcttttggtgctctgcacgccgttcaaaaggggatcaccgtcgtgtac 513 |||||||| || || || ||||||||||| || |||||||||||||| |||||| Sbjct: 871 gagaactcgttcggcgcgctgcacgccgtccagaaggggatcaccgttgtgtac 924
>dbj|AK109067.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-154-F11, full insert sequence Length = 1572 Score = 65.9 bits (33), Expect = 1e-07 Identities = 111/137 (81%) Strand = Plus / Plus Query: 22 gggatatggccggagtcaagaagcttcagtgacaaagggtacgggccaataccatcaagg 81 ||||||||||||||||| ||||||||| | ||| ||||||||||||| | || || || Sbjct: 870 gggatatggccggagtcgagaagcttccgcgacgaagggtacgggccggtgccggcacgg 929 Query: 82 tggaaaggaaagtgccaagtcgggccagactggggcatcaataattgcagccgcaagatc 141 ||||| || ||| || ||||| || ||||||| ||| || ||||||||||||||| Sbjct: 930 tggaagggcgtgtgtcaggtcggagaaggatggggcagcaacaactgcagccgcaagatc 989 Query: 142 atcggcgcaaggttcta 158 |||||||| ||||||| Sbjct: 990 atcggcgcgcggttcta 1006 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 460 gagaactcttttggtgctctgcacgccgttcaaaaggggatcaccgtcgtgtac 513 |||||||| || || || ||||||||||| || |||||||||||||| |||||| Sbjct: 1305 gagaactcgttcggcgcgctgcacgccgtccagaaggggatcaccgttgtgtac 1358
>dbj|AK106644.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-E09, full insert sequence Length = 2875 Score = 65.9 bits (33), Expect = 1e-07 Identities = 111/137 (81%) Strand = Plus / Minus Query: 22 gggatatggccggagtcaagaagcttcagtgacaaagggtacgggccaataccatcaagg 81 ||||||||||||||||| ||||||||| | ||| ||||||||||||| | || || || Sbjct: 2347 gggatatggccggagtcgagaagcttccgcgacgaagggtacgggccggtgccggcacgg 2288 Query: 82 tggaaaggaaagtgccaagtcgggccagactggggcatcaataattgcagccgcaagatc 141 ||||| || ||| || ||||| || ||||||| ||| || ||||||||||||||| Sbjct: 2287 tggaagggcgtgtgtcaggtcggagaaggatggggcagcaacaactgcagccgcaagatc 2228 Query: 142 atcggcgcaaggttcta 158 |||||||| ||||||| Sbjct: 2227 atcggcgcgcggttcta 2211 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 460 gagaactcttttggtgctctgcacgccgttcaaaaggggatcaccgtcgtgtac 513 |||||||| || || || ||||||||||| || |||||||||||||| |||||| Sbjct: 1912 gagaactcgttcggcgcgctgcacgccgtccagaaggggatcaccgttgtgtac 1859
>dbj|AK063520.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-H07, full insert sequence Length = 2462 Score = 65.9 bits (33), Expect = 1e-07 Identities = 111/137 (81%) Strand = Plus / Plus Query: 22 gggatatggccggagtcaagaagcttcagtgacaaagggtacgggccaataccatcaagg 81 ||||||||||||||||| ||||||||| | ||| ||||||||||||| | || || || Sbjct: 451 gggatatggccggagtcgagaagcttccgcgacgaagggtacgggccggtgccggcacgg 510 Query: 82 tggaaaggaaagtgccaagtcgggccagactggggcatcaataattgcagccgcaagatc 141 ||||| || ||| || ||||| || ||||||| ||| || ||||||||||||||| Sbjct: 511 tggaagggcgtgtgtcaggtcggagaaggatggggcagcaacaactgcagccgcaagatc 570 Query: 142 atcggcgcaaggttcta 158 |||||||| ||||||| Sbjct: 571 atcggcgcgcggttcta 587 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 460 gagaactcttttggtgctctgcacgccgttcaaaaggggatcaccgtcgtgtac 513 |||||||| || || || ||||||||||| || |||||||||||||| |||||| Sbjct: 886 gagaactcgttcggcgcgctgcacgccgtccagaaggggatcaccgttgtgtac 939
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Minus Query: 496 gggatcaccgtcgtgtacacggccggcaacaatggccccataccacagacggttgggaac 555 |||||| ||||||||| | | || || ||| | ||||||| ||| |||||||| |||| | Sbjct: 9827312 gggatccccgtcgtgttctctgctgggaacgacggccccacaccgcagacggtggggagc 9827253 Query: 556 acttcgccgtgggtcatcacggtggc 581 || | ||| ||||||||||||||||| Sbjct: 9827252 accttgccatgggtcatcacggtggc 9827227 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 561 gccgtgggtcatcacggtggc 581 ||||||||||||||||||||| Sbjct: 9779604 gccgtgggtcatcacggtggc 9779584 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 561 gccgtgggtcatcacggtggc 581 ||||||||||||||||||||| Sbjct: 9765470 gccgtgggtcatcacggtggc 9765450 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 561 gccgtgggtcatcacggtggc 581 ||||||||||||||||||||| Sbjct: 9760825 gccgtgggtcatcacggtggc 9760805 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 561 gccgtgggtcatcacggtggc 581 ||||||||||||||||||||| Sbjct: 9713671 gccgtgggtcatcacggtggc 9713651
>dbj|AP005007.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0521F09 Length = 164823 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Minus Query: 496 gggatcaccgtcgtgtacacggccggcaacaatggccccataccacagacggttgggaac 555 |||||| ||||||||| | | || || ||| | ||||||| ||| |||||||| |||| | Sbjct: 8274 gggatccccgtcgtgttctctgctgggaacgacggccccacaccgcagacggtggggagc 8215 Query: 556 acttcgccgtgggtcatcacggtggc 581 || | ||| ||||||||||||||||| Sbjct: 8214 accttgccatgggtcatcacggtggc 8189
>dbj|AP005875.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0033K18 Length = 138487 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Minus Query: 496 gggatcaccgtcgtgtacacggccggcaacaatggccccataccacagacggttgggaac 555 |||||| ||||||||| | | || || ||| | ||||||| ||| |||||||| |||| | Sbjct: 136383 gggatccccgtcgtgttctctgctgggaacgacggccccacaccgcagacggtggggagc 136324 Query: 556 acttcgccgtgggtcatcacggtggc 581 || | ||| ||||||||||||||||| Sbjct: 136323 accttgccatgggtcatcacggtggc 136298 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 561 gccgtgggtcatcacggtggc 581 ||||||||||||||||||||| Sbjct: 88675 gccgtgggtcatcacggtggc 88655 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 561 gccgtgggtcatcacggtggc 581 ||||||||||||||||||||| Sbjct: 74541 gccgtgggtcatcacggtggc 74521 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 561 gccgtgggtcatcacggtggc 581 ||||||||||||||||||||| Sbjct: 69896 gccgtgggtcatcacggtggc 69876 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 561 gccgtgggtcatcacggtggc 581 ||||||||||||||||||||| Sbjct: 22742 gccgtgggtcatcacggtggc 22722
>dbj|AK100351.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083C17, full insert sequence Length = 2891 Score = 48.1 bits (24), Expect = 0.034 Identities = 51/60 (85%) Strand = Plus / Plus Query: 19 actgggatatggccggagtcaagaagcttcagtgacaaagggtacgggccaataccatca 78 ||||| || ||||| || ||||||||||||||||| | || ||||| |||||||||||| Sbjct: 420 actggtatctggcctgaatcaagaagcttcagtgatcatggatacggaccaataccatca 479
>gb|AC120307.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0074E19 map R1938, complete sequence Length = 160847 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Plus Query: 575 cggtggcagcaaccaaggttgatcgg 600 |||||||||||| ||||||||||||| Sbjct: 63047 cggtggcagcaaacaaggttgatcgg 63072
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Plus Query: 575 cggtggcagcaaccaaggttgatcgg 600 |||||||||||| ||||||||||||| Sbjct: 2287048 cggtggcagcaaacaaggttgatcgg 2287073 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 416 atgatggagtagacgtcttgtctctctcc 444 |||||||||| ||||||||||| |||||| Sbjct: 8713972 atgatggagttgacgtcttgtcactctcc 8713944
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Plus Query: 575 cggtggcagcaaccaaggttgatcgg 600 |||||||||||| ||||||||||||| Sbjct: 2294829 cggtggcagcaaacaaggttgatcgg 2294854 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 416 atgatggagtagacgtcttgtctctctcc 444 |||||||||| ||||||||||| |||||| Sbjct: 8784735 atgatggagttgacgtcttgtcactctcc 8784707
>ref|XM_472324.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 681 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 116 gcatcaataattgcagccgcaagat 140 ||||||||||||| ||||||||||| Sbjct: 208 gcatcaataattggagccgcaagat 184
>gb|AC145810.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0059C14, complete sequence Length = 142138 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 416 atgatggagtagacgtcttgtctctctcc 444 |||||||||| ||||||||||| |||||| Sbjct: 12743 atgatggagttgacgtcttgtcactctcc 12715
>gb|AC145366.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0014O08 map near S2137, complete sequence Length = 134033 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 416 atgatggagtagacgtcttgtctctctcc 444 |||||||||| ||||||||||| |||||| Sbjct: 125138 atgatggagttgacgtcttgtcactctcc 125110
>emb|AL606621.3|OSJN00054 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072K14, complete sequence Length = 139855 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 116 gcatcaataattgcagccgcaagat 140 ||||||||||||| ||||||||||| Sbjct: 115798 gcatcaataattggagccgcaagat 115774
>gb|AF106589.2| Caenorhabditis elegans cosmid Y44E3A, complete sequence Length = 48488 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 236 gtgcatcaactgcggcgggctcagc 260 ||||||||||| ||||||||||||| Sbjct: 26653 gtgcatcaacttcggcgggctcagc 26629
>ref|NM_058742.3| Caenorhabditis elegans Y44E3A.4 (Y44E3A.4) mRNA, complete cds Length = 1598 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 236 gtgcatcaactgcggcgggctcagc 260 ||||||||||| ||||||||||||| Sbjct: 421 gtgcatcaacttcggcgggctcagc 445
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 116 gcatcaataattgcagccgcaagat 140 ||||||||||||| ||||||||||| Sbjct: 19462237 gcatcaataattggagccgcaagat 19462213
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 275 gctttcatggcctcgccaagg 295 ||||||||||||||||||||| Sbjct: 8350061 gctttcatggcctcgccaagg 8350081
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 216 ccatggccacggcacgcactg 236 ||||||||||||||||||||| Sbjct: 6901921 ccatggccacggcacgcactg 6901901
>dbj|AP005527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0603C10 Length = 187620 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 275 gctttcatggcctcgccaagg 295 ||||||||||||||||||||| Sbjct: 143566 gctttcatggcctcgccaagg 143586
>dbj|AK110921.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-D02, full insert sequence Length = 1280 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 416 atgatggagtagacgtcttgtctctctcc 444 |||||||||| ||||||||||| |||||| Sbjct: 865 atgatggagttgacgtcttgtcactctcc 893
>dbj|AK110825.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-H07, full insert sequence Length = 2380 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 561 gccgtgggtcatcacggtggc 581 ||||||||||||||||||||| Sbjct: 1014 gccgtgggtcatcacggtggc 1034
>dbj|AK072092.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118B21, full insert sequence Length = 2457 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 561 gccgtgggtcatcacggtggc 581 ||||||||||||||||||||| Sbjct: 1112 gccgtgggtcatcacggtggc 1132
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 297 ggttgcacggggaggtgcgccgcg 320 ||||||| |||||||||||||||| Sbjct: 1507613 ggttgcagggggaggtgcgccgcg 1507590
>ref|XM_757413.1| Ustilago maydis 521 hypothetical protein (UM06359.1) partial mRNA Length = 864 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 573 cacggtggcagcaaccaagg 592 |||||||||||||||||||| Sbjct: 805 cacggtggcagcaaccaagg 824
>emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete chromosome; segment 9/12 Length = 323450 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 ccgcaagatcatcggcgcaa 151 |||||||||||||||||||| Sbjct: 85081 ccgcaagatcatcggcgcaa 85100
>gb|AC162180.2| Mus musculus BAC clone RP23-126K16 from chromosome 9, complete sequence Length = 226160 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 532 cccataccacagacggttgg 551 |||||||||||||||||||| Sbjct: 126700 cccataccacagacggttgg 126719
>gb|AC161589.2| Mus musculus BAC clone RP24-383M20 from chromosome 9, complete sequence Length = 226186 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 532 cccataccacagacggttgg 551 |||||||||||||||||||| Sbjct: 26072 cccataccacagacggttgg 26053
>gb|AC123660.8| Mus musculus chromosome 3, clone RP23-196E24, complete sequence Length = 211632 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 gaagcttcagtgacaaaggg 60 |||||||||||||||||||| Sbjct: 46825 gaagcttcagtgacaaaggg 46844
>gb|AC069513.28| Homo sapiens 3 BAC RP11-171N2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 174097 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 gggctcagccgtggaggcag 271 |||||||||||||||||||| Sbjct: 19566 gggctcagccgtggaggcag 19585
>gb|AC112666.9| Mus musculus chromosome 3, clone RP24-119D5, complete sequence Length = 193302 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 gaagcttcagtgacaaaggg 60 |||||||||||||||||||| Sbjct: 108995 gaagcttcagtgacaaaggg 109014
>gb|AC138975.2| Homo sapiens 12 BAC RP11-622F19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 10735 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 572 tcacggtggcagcaaccaaggttg 595 |||||||| ||||||||||||||| Sbjct: 4440 tcacggtgacagcaaccaaggttg 4463
>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome Length = 2153922 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 313 gcgccgcgcgctcgcatagcggta 336 ||||||||||| |||||||||||| Sbjct: 1240027 gcgccgcgcgcgcgcatagcggta 1240004 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,596,207 Number of Sequences: 3902068 Number of extensions: 3596207 Number of successful extensions: 59794 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59316 Number of HSP's gapped (non-prelim): 466 length of query: 605 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 582 effective length of database: 17,143,297,704 effective search space: 9977399263728 effective search space used: 9977399263728 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
