ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd14a13 |
|---|---|
| Clone Library Name | barley_pub |
>AMP2A_ARATH (Q9FV49) Methionine aminopeptidase 2A (EC 3.4.11.18) (MetAP 2A)| (MAP 2A) (Peptidase M 2A) Length = 441 Score = 39.3 bits (90), Expect = 0.005 Identities = 21/42 (50%), Positives = 21/42 (50%) Frame = +3 Query: 333 EDGAGAPXXXXXXXXXXXXXXXXDSLQQTDPPSIPVDELFPS 458 EDG A SLQQTDPPSIPV ELFPS Sbjct: 53 EDGLKAEASTKKKKKKSKSKKKKSSLQQTDPPSIPVLELFPS 94
>AMP2B_ARATH (Q56Y85) Methionine aminopeptidase 2B (EC 3.4.11.18) (MetAP 2B)| (MAP 2B) (Peptidase M 2B) Length = 439 Score = 34.3 bits (77), Expect = 0.16 Identities = 15/16 (93%), Positives = 15/16 (93%) Frame = +3 Query: 411 QQTDPPSIPVDELFPS 458 QQTDPPSIPV ELFPS Sbjct: 77 QQTDPPSIPVVELFPS 92
>PITX3_HUMAN (O75364) Pituitary homeobox 3 (Homeobox protein PITX3)| Length = 302 Score = 30.4 bits (67), Expect = 2.3 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 9/63 (14%) Frame = -1 Query: 199 APISLVAASVLP---------PAISYVSFYGGGEPSARAAAVGSGVTGQRTASAVAARTS 47 +P S +AAS++P P + GGG P AAV SG ASA AA + Sbjct: 189 SPPSSIAASMVPSAAAAPGTVPGPGALQGLGGGPPGLAPAAVSSGAVSCPYASAAAAAAA 248 Query: 46 PSA 38 ++ Sbjct: 249 AAS 251
>NETR_SAGLB (Q5G265) Neurotrypsin precursor (EC 3.4.21.-)| Length = 875 Score = 30.0 bits (66), Expect = 2.9 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +2 Query: 152 RYGWG*HGCSNQGDGGIACWANQGNKRYS 238 R WG H CS++ D GIAC+ R S Sbjct: 467 RRQWGRHDCSHREDVGIACYPGSEGHRLS 495
>YOD3_CAEEL (P34595) Hypothetical protein ZC262.3 in chromosome III| Length = 773 Score = 29.3 bits (64), Expect = 5.0 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%) Frame = -3 Query: 224 FLGLPNMQCPHLLGC-CIRATPSHIVCF 144 FL L +CP +LGC C+R + +I CF Sbjct: 31 FLDLQLEKCPQVLGCRCVRDSTRNIQCF 58
>ATZD_PSESD (P58329) Cyanuric acid amidohydrolase (EC 3.5.2.15)| Length = 363 Score = 28.9 bits (63), Expect = 6.6 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 6/57 (10%) Frame = +3 Query: 30 IRRAEGDVLAATAD-----AVLCPV-TPLPTAAARAEGSPPP*KETYDMAGGSTDAA 182 ++RA D A+ D V CP+ TP A+AR+ G P +TY+ G S A+ Sbjct: 141 VKRAMRDAGIASIDDLHFVQVKCPLLTPAKIASARSRGCAPVTTDTYESMGYSRGAS 197
>FETUB_RAT (Q9QX79) Fetuin-B precursor (IRL685)| Length = 378 Score = 28.9 bits (63), Expect = 6.6 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = -1 Query: 217 VCPTCNAPISLVAASVLPPAISYVSFYGGGEPSARAAAV 101 +CP C P+ L A SVL A ++ + PS + A V Sbjct: 153 MCPDCPHPVDLSAPSVLEAATESLAKFNSENPSKQYALV 191
>DMBT1_MOUSE (Q60997) Deleted in malignant brain tumors 1 protein precursor| (CRP-ductin) (Vomeroglandin) Length = 2085 Score = 28.9 bits (63), Expect = 6.6 Identities = 13/39 (33%), Positives = 17/39 (43%) Frame = +2 Query: 158 GWG*HGCSNQGDGGIACWANQGNKRYSEKCVR*QWWRHG 274 GW H C +Q D G+ C A+Q + WW G Sbjct: 269 GWLSHNCGHQEDAGVICSASQSSSPTP------GWWNPG 301
>MSX1_SAGOE (Q2VL82) Homeobox protein MSX-1 (Msh homeobox 1-like protein)| Length = 297 Score = 28.9 bits (63), Expect = 6.6 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 5/50 (10%) Frame = -1 Query: 193 ISLVAASVLPPAISYVSFYGGGEPSARAAAVGSGVTG-----QRTASAVA 59 + + A +LPPA +SF GG P+A AAA G+ + G QR A VA Sbjct: 232 LKMAAKPMLPPAAFGLSFPLGG-PAAVAAAAGASLYGASGPFQRAALPVA 280
>MSX1_PROVC (Q2VL76) Homeobox protein MSX-1 (Msh homeobox 1-like protein)| Length = 297 Score = 28.9 bits (63), Expect = 6.6 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 5/50 (10%) Frame = -1 Query: 193 ISLVAASVLPPAISYVSFYGGGEPSARAAAVGSGVTG-----QRTASAVA 59 + + A +LPPA +SF GG P+A AAA G+ + G QR A VA Sbjct: 232 LKMAAKPMLPPAAFGLSFPLGG-PAAVAAAAGASLYGASGPFQRAALPVA 280
>MSX1_PERPO (Q2VL80) Homeobox protein MSX-1 (Msh homeobox 1-like protein)| Length = 297 Score = 28.9 bits (63), Expect = 6.6 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 5/50 (10%) Frame = -1 Query: 193 ISLVAASVLPPAISYVSFYGGGEPSARAAAVGSGVTG-----QRTASAVA 59 + + A +LPPA +SF GG P+A AAA G+ + G QR A VA Sbjct: 232 LKMAAKPMLPPAAFGLSFPLGG-PAAVAAAAGASLYGASGPFQRAALPVA 280
>MSX1_PANTR (Q2VL88) Homeobox protein MSX-1 (Msh homeobox 1-like protein)| Length = 297 Score = 28.9 bits (63), Expect = 6.6 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 5/50 (10%) Frame = -1 Query: 193 ISLVAASVLPPAISYVSFYGGGEPSARAAAVGSGVTG-----QRTASAVA 59 + + A +LPPA +SF GG P+A AAA G+ + G QR A VA Sbjct: 232 LKMAAKPMLPPAAFGLSFPLGG-PAAVAAAAGASLYGASGPFQRAALPVA 280
>MSX1_MACMU (Q2VL87) Homeobox protein MSX-1 (Msh homeobox 1-like protein)| Length = 297 Score = 28.9 bits (63), Expect = 6.6 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 5/50 (10%) Frame = -1 Query: 193 ISLVAASVLPPAISYVSFYGGGEPSARAAAVGSGVTG-----QRTASAVA 59 + + A +LPPA +SF GG P+A AAA G+ + G QR A VA Sbjct: 232 LKMAAKPMLPPAAFGLSFPLGG-PAAVAAAAGASLYGASGPFQRAALPVA 280
>MSX1_LEPED (Q2VL77) Homeobox protein MSX-1 (Msh homeobox 1-like protein)| Length = 297 Score = 28.9 bits (63), Expect = 6.6 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 5/50 (10%) Frame = -1 Query: 193 ISLVAASVLPPAISYVSFYGGGEPSARAAAVGSGVTG-----QRTASAVA 59 + + A +LPPA +SF GG P+A AAA G+ + G QR A VA Sbjct: 232 LKMAAKPMLPPAAFGLSFPLGG-PAAVAAAAGASLYGASGPFQRAALPVA 280
>MSX1_LEORO (Q2VL83) Homeobox protein MSX-1 (Msh homeobox 1-like protein)| Length = 297 Score = 28.9 bits (63), Expect = 6.6 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 5/50 (10%) Frame = -1 Query: 193 ISLVAASVLPPAISYVSFYGGGEPSARAAAVGSGVTG-----QRTASAVA 59 + + A +LPPA +SF GG P+A AAA G+ + G QR A VA Sbjct: 232 LKMAAKPMLPPAAFGLSFPLGG-PAAVAAAAGASLYGASGPFQRAALPVA 280
>MSX1_LEMCA (Q2VL78) Homeobox protein MSX-1 (Msh homeobox 1-like protein)| Length = 297 Score = 28.9 bits (63), Expect = 6.6 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 5/50 (10%) Frame = -1 Query: 193 ISLVAASVLPPAISYVSFYGGGEPSARAAAVGSGVTG-----QRTASAVA 59 + + A +LPPA +SF GG P+A AAA G+ + G QR A VA Sbjct: 232 LKMAAKPMLPPAAFGLSFPLGG-PAAVAAAAGASLYGASGPFQRAALPVA 280
>MSX1_HUMAN (P28360) Homeobox protein MSX-1 (Msh homeobox 1-like protein)| (Hox-7) Length = 297 Score = 28.9 bits (63), Expect = 6.6 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 5/50 (10%) Frame = -1 Query: 193 ISLVAASVLPPAISYVSFYGGGEPSARAAAVGSGVTG-----QRTASAVA 59 + + A +LPPA +SF GG P+A AAA G+ + G QR A VA Sbjct: 232 LKMAAKPMLPPAAFGLSFPLGG-PAAVAAAAGASLYGASGPFQRAALPVA 280
>MSX1_DAUMA (Q2VL79) Homeobox protein MSX-1 (Msh homeobox 1-like protein)| Length = 297 Score = 28.9 bits (63), Expect = 6.6 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 5/50 (10%) Frame = -1 Query: 193 ISLVAASVLPPAISYVSFYGGGEPSARAAAVGSGVTG-----QRTASAVA 59 + + A +LPPA +SF GG P+A AAA G+ + G QR A VA Sbjct: 232 LKMAAKPMLPPAAFGLSFPLGG-PAAVAAAAGASLYGASGPFQRAALPVA 280
>MSX1_CALJA (Q2VL84) Homeobox protein MSX-1 (Msh homeobox 1-like protein)| Length = 297 Score = 28.9 bits (63), Expect = 6.6 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 5/50 (10%) Frame = -1 Query: 193 ISLVAASVLPPAISYVSFYGGGEPSARAAAVGSGVTG-----QRTASAVA 59 + + A +LPPA +SF GG P+A AAA G+ + G QR A VA Sbjct: 232 LKMAAKPMLPPAAFGLSFPLGG-PAAVAAAAGASLYGASGPFQRAALPVA 280
>MSX1_CALGO (Q2VL85) Homeobox protein MSX-1 (Msh homeobox 1-like protein)| Length = 297 Score = 28.9 bits (63), Expect = 6.6 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 5/50 (10%) Frame = -1 Query: 193 ISLVAASVLPPAISYVSFYGGGEPSARAAAVGSGVTG-----QRTASAVA 59 + + A +LPPA +SF GG P+A AAA G+ + G QR A VA Sbjct: 232 LKMAAKPMLPPAAFGLSFPLGG-PAAVAAAAGASLYGASGPFQRAALPVA 280
>DMBT1_HUMAN (Q9UGM3) Deleted in malignant brain tumors 1 protein precursor| (Glycoprotein 340) (Gp-340) (Surfactant pulmonary-associated D-binding protein) Length = 2413 Score = 28.9 bits (63), Expect = 6.6 Identities = 15/48 (31%), Positives = 21/48 (43%) Frame = +2 Query: 158 GWG*HGCSNQGDGGIACWANQGNKRYSEKCVR*QWWRHGRSSVVTTSR 301 GW H C + D G+ C A Q N ++ WW + TT+R Sbjct: 1723 GWLTHNCGHHEDAGVICSATQINSTTTD------WW---HPTTTTTAR 1761
>SOX3_MOUSE (P53784) Transcription factor SOX-3| Length = 375 Score = 28.5 bits (62), Expect = 8.6 Identities = 18/41 (43%), Positives = 24/41 (58%) Frame = -1 Query: 160 AISYVSFYGGGEPSARAAAVGSGVTGQRTASAVAARTSPSA 38 A + S YGG PSA AAA + GQ+ A+A AA + +A Sbjct: 255 AAAAASGYGGMAPSAAAAA--AAAYGQQPATAAAAAAAAAA 293
>SOX3_HUMAN (P41225) Transcription factor SOX-3| Length = 446 Score = 28.5 bits (62), Expect = 8.6 Identities = 18/41 (43%), Positives = 24/41 (58%) Frame = -1 Query: 160 AISYVSFYGGGEPSARAAAVGSGVTGQRTASAVAARTSPSA 38 A + S YGG PSA AAA + GQ+ A+A AA + +A Sbjct: 326 AAAAASGYGGMAPSATAAA--AAAYGQQPATAAAAAAAAAA 364
>NETR_MOUSE (O08762) Neurotrypsin precursor (EC 3.4.21.-) (Motopsin)| (Brain-specific serine protease 3) (BSSP-3) Length = 761 Score = 28.5 bits (62), Expect = 8.6 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = +2 Query: 152 RYGWG*HGCSNQGDGGIACWANQGNKRYS 238 R WG H CS++ D G+ C+ + R S Sbjct: 353 RRQWGRHDCSHREDVGLTCYPDSDGHRLS 381
>C163B_HUMAN (Q9NR16) Scavenger receptor cysteine-rich type 1 protein M160| precursor (CD163 antigen-like 1) (CD163b antigen) Length = 1453 Score = 28.5 bits (62), Expect = 8.6 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = +2 Query: 158 GWG*HGCSNQGDGGIACWANQGNKRYSE 241 GWG H C ++ D G+ C + YSE Sbjct: 1119 GWGQHDCRHKEDAGVICSEFTALRLYSE 1146
>DAK2_YEAST (P43550) Dihydroxyacetone kinase 2 (EC 2.7.1.29) (Glycerone kinase| 2) (DHA kinase 2) Length = 591 Score = 28.5 bits (62), Expect = 8.6 Identities = 18/46 (39%), Positives = 21/46 (45%) Frame = -1 Query: 166 PPAISYVSFYGGGEPSARAAAVGSGVTGQRTASAVAARTSPSARLI 29 PP +S VS G G A VG G A A+ A SPS + I Sbjct: 48 PPKVSLVSGGGSGHEPTHAGFVGEGALDAIAAGAIFA--SPSTKQI 91
>AMOT_MOUSE (Q8VHG2) Angiomotin (Fragment)| Length = 926 Score = 28.5 bits (62), Expect = 8.6 Identities = 18/51 (35%), Positives = 24/51 (47%) Frame = -1 Query: 199 APISLVAASVLPPAISYVSFYGGGEPSARAAAVGSGVTGQRTASAVAARTS 47 AP+S AA +P A S + AAV + T TA+A AA T+ Sbjct: 762 APVSPAAAVQIPAAASLTPATVSPTAATATAAVAAATTAAITAAAAAATTA 812 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,795,235 Number of Sequences: 219361 Number of extensions: 878898 Number of successful extensions: 3811 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 3576 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3795 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
