Clone Information

BLAST Search Result

Clone Name	basd14a13
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY105027.1\| Zea mays PCO081602 mRNA sequence	78	3e-11
2	ref\|XM_483588.1\| Oryza sativa (japonica cultivar-group), mRNA	66	1e-07
3	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	66	1e-07
4	dbj\|AP003914.3\| Oryza sativa (japonica cultivar-group) genomic D...	66	1e-07
5	dbj\|AP003948.2\| Oryza sativa (japonica cultivar-group) genomic D...	66	1e-07
6	gb\|AC027133.3\| Oryza sativa (japonica cultivar-group) chromosome...	56	1e-04
7	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	56	1e-04
8	dbj\|AK122063.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	56	1e-04
9	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	56	1e-04
10	emb\|CR847978.17\| Zebrafish DNA sequence from clone CH211-209D14 ...	44	0.40
11	gb\|AC007018.7\| Arabidopsis thaliana chromosome 2 clone F5G3 map ...	44	0.40
12	gb\|AY740087.1\| Ostreococcus tauri CONSTANS-like protein gene, co...	44	0.40
13	gb\|CP000151.1\| Burkholderia sp. 383 chromosome 1, complete sequence	42	1.6
14	ref\|XM_473485.1\| Oryza sativa (japonica cultivar-group), predic...	42	1.6
15	ref\|XM_387331.1\| Gibberella zeae PH-1 chromosome 4 hypothetical ...	42	1.6
16	emb\|AL139423.25\| Human DNA sequence from clone RP4-734G22 on chr...	42	1.6
17	emb\|AL035701.13\|HS8B1 Human DNA sequence from clone RP1-8B1 on c...	42	1.6
18	emb\|AL606687.3\|OSJN00087 Oryza sativa genomic DNA, chromosome 4,...	42	1.6
19	dbj\|D50659.1\| Homo sapiens ACTGP9 pseudogene, gamma-actin mRNA-c...	42	1.6
20	ref\|NG_001069.1\| Homo sapiens actin, gamma pseudogene 9 (ACTGP9)...	42	1.6
21	gb\|AF350318.1\| Amaranthus tricolor copia-like retrotransposon C1...	42	1.6
22	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.6
23	gb\|CP000356.1\| Sphingopyxis alaskensis RB2256, complete genome	40	6.2
24	ref\|XM_705513.1\| Candida albicans SC5314 putative U3 snoRNP prot...	40	6.2
25	ref\|XM_705499.1\| Candida albicans SC5314 putative U3 snoRNP prot...	40	6.2
26	emb\|AL772143.31\| Zebrafish DNA sequence from clone CH211-158B22 ...	40	6.2
27	emb\|CR658347.2\|CNS0F6Y9 Tetraodon nigroviridis full-length cDNA	40	6.2
28	ref\|XM_661129.1\| Cryptosporidium hominis TU502 hypothetical prot...	40	6.2
29	emb\|CR522870.1\| Desulfotalea psychrophila LSv54 chromosome	40	6.2
30	emb\|BX640442.1\| Bordetella bronchiseptica strain RB50, complete ...	40	6.2
31	emb\|BX640430.1\| Bordetella parapertussis strain 12822, complete ...	40	6.2
32	emb\|BX640417.1\| Bordetella pertussis strain Tohama I, complete g...	40	6.2
33	gb\|AC008763.9\| Homo sapiens chromosome 19 clone CTD-3214H19, com...	40	6.2
34	gb\|AC009806.9\| Homo sapiens chromosome 11, clone RP11-51B23, com...	40	6.2
35	gb\|AE005919.1\| Caulobacter crescentus CB15 section 245 of 359 of...	40	6.2
36	gb\|AC122145.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.2
37	gb\|AC097446.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.2
38	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.2
39	gb\|AC010578.5\|AC010578 Drosophila melanogaster, chromosome 2R, r...	40	6.2
40	gb\|AC084537.1\|CBRG26I17 Caenorhabditis briggsae cosmid G26I17, c...	40	6.2
41	gb\|AC008812.7\|AC008812 Homo sapiens chromosome 19 clone CTD-2102...	40	6.2
42	dbj\|BA000040.2\| Bradyrhizobium japonicum USDA 110 DNA, complete ...	40	6.2
43	gb\|AE003813.3\| Drosophila melanogaster chromosome 2R, section 37...	40	6.2
44	gb\|CP000085.1\| Burkholderia thailandensis E264 chromosome II, co...	40	6.2
45	emb\|CR936257.1\| Natronomonas pharaonis DSM 2160 complete genome	40	6.2
46	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.2
47	emb\|AL954371.6\| Zebrafish DNA sequence from clone CH211-207O15, ...	40	6.2
48	gb\|AC145948.5\| Gallus gallus BAC clone CH261-24O17 from chromoso...	40	6.2

>gb|AY105027.1| Zea mays PCO081602 mRNA sequence
          Length = 1570

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 51/55 (92%)
 Strand = Plus / Plus

                                                                  
Query: 406 cccttcagcagacagatcctccatcaatccctgtggatgagcttttcccttcagg 460
           ||||||| |||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct: 472 cccttcaacagacagatcctccatcaatacctgttgatgagcttttcccctcagg 526



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                         
Query: 300 gatgatgatgatgcacaagtggatggtccatctgaagatggagcag 345
           ||||||||||| |||||||  |||||||||||| ||||||||||||
Sbjct: 372 gatgatgatgaagcacaagctgatggtccatctcaagatggagcag 417



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 181 caaccaaggagatgggggcattgcatgttgggcaaa 216
           |||||||||||||||  ||| |||||||||| ||||
Sbjct: 241 caaccaaggagatggatgcactgcatgttggacaaa 276

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>ref|XM_483588.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1389

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                
Query: 408 cttcagcagacagatcctccatcaatccctgtggatgagcttttcccttcagg 460
           ||||||||||||||||||||||| |||||||| ||||| || ||||| |||||
Sbjct: 295 cttcagcagacagatcctccatcgatccctgttgatgaactcttcccatcagg 347



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Plus

                                                                       
Query: 275 aggagctcagtcgtcaccaccagcagatgatgatgatgcacaagtggatggtccatctga 334
           |||||||| ||  |||||||||| | |||||||||||||| |||||||   ||| ||| |
Sbjct: 138 aggagctccgtactcaccaccagaaaatgatgatgatgcagaagtggactatccgtctca 197

                     
Query: 335 agatggagca 344
           ||||||||||
Sbjct: 198 agatggagca 207

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                     
Query: 408      cttcagcagacagatcctccatcaatccctgtggatgagcttttcccttcagg 460
                ||||||||||||||||||||||| |||||||| ||||| || ||||| |||||
Sbjct: 27118948 cttcagcagacagatcctccatcgatccctgttgatgaactcttcccatcagg 27118896



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                            
Query: 275      aggagctcagtcgtcaccaccagcagatgatgatgatgcacaagtggatggtccatctga 334
                |||||||| ||  |||||||||| | |||||||||||||| |||||||   ||| ||| |
Sbjct: 27119283 aggagctccgtactcaccaccagaaaatgatgatgatgcagaagtggactatccgtctca 27119224

                          
Query: 335      agatggagca 344
                ||||||||||
Sbjct: 27119223 agatggagca 27119214

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>dbj|AP003914.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1521_G02
          Length = 117964

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                  
Query: 408   cttcagcagacagatcctccatcaatccctgtggatgagcttttcccttcagg 460
             ||||||||||||||||||||||| |||||||| ||||| || ||||| |||||
Sbjct: 19981 cttcagcagacagatcctccatcgatccctgttgatgaactcttcccatcagg 19929



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                         
Query: 275   aggagctcagtcgtcaccaccagcagatgatgatgatgcacaagtggatggtccatctga 334
             |||||||| ||  |||||||||| | |||||||||||||| |||||||   ||| ||| |
Sbjct: 20316 aggagctccgtactcaccaccagaaaatgatgatgatgcagaagtggactatccgtctca 20257

                       
Query: 335   agatggagca 344
             ||||||||||
Sbjct: 20256 agatggagca 20247

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>dbj|AP003948.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1211_G06
          Length = 96421

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                  
Query: 408   cttcagcagacagatcctccatcaatccctgtggatgagcttttcccttcagg 460
             ||||||||||||||||||||||| |||||||| ||||| || ||||| |||||
Sbjct: 90035 cttcagcagacagatcctccatcgatccctgttgatgaactcttcccatcagg 89983



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                         
Query: 275   aggagctcagtcgtcaccaccagcagatgatgatgatgcacaagtggatggtccatctga 334
             |||||||| ||  |||||||||| | |||||||||||||| |||||||   ||| ||| |
Sbjct: 90370 aggagctccgtactcaccaccagaaaatgatgatgatgcagaagtggactatccgtctca 90311

                       
Query: 335   agatggagca 344
             ||||||||||
Sbjct: 90310 agatggagca 90301

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>gb|AC027133.3| Oryza sativa (japonica cultivar-group) chromosome 12 clone
             OSJNBb0003F09, complete sequence
          Length = 159600

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 51/58 (87%), Gaps = 3/58 (5%)
 Strand = Plus / Plus

                                                                       
Query: 288   tcaccaccagcagatgatgatgat---gcacaagtggatggtccatctgaagatggag 342
             |||||||||| |||||||||||||   || |||| ||||||||||||| |||||||||
Sbjct: 65753 tcaccaccagaagatgatgatgatgaagcgcaaggggatggtccatctcaagatggag 65810



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 408   cttcagcagacagatcctccatcaat 433
             ||||||||||| ||||||||||||||
Sbjct: 66078 cttcagcagactgatcctccatcaat 66103

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 51/58 (87%), Gaps = 3/58 (5%)
 Strand = Plus / Plus

                                                                          
Query: 288      tcaccaccagcagatgatgatgat---gcacaagtggatggtccatctgaagatggag 342
                |||||||||| |||||||||||||   || |||| ||||||||||||| |||||||||
Sbjct: 26940786 tcaccaccagaagatgatgatgatgaagcgcaaggggatggtccatctcaagatggag 26940843



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 408      cttcagcagacagatcctccatcaat 433
                ||||||||||| ||||||||||||||
Sbjct: 26941111 cttcagcagactgatcctccatcaat 26941136

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>dbj|AK122063.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115K11, full
           insert sequence
          Length = 1791

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 51/58 (87%), Gaps = 3/58 (5%)
 Strand = Plus / Plus

                                                                     
Query: 288 tcaccaccagcagatgatgatgat---gcacaagtggatggtccatctgaagatggag 342
           |||||||||| |||||||||||||   || |||| ||||||||||||| |||||||||
Sbjct: 322 tcaccaccagaagatgatgatgatgaagcgcaaggggatggtccatctcaagatggag 379



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 408 cttcagcagacagatcctccatcaat 433
           ||||||||||| ||||||||||||||
Sbjct: 439 cttcagcagactgatcctccatcaat 464

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 51/58 (87%), Gaps = 3/58 (5%)
 Strand = Plus / Plus

                                                                          
Query: 288      tcaccaccagcagatgatgatgat---gcacaagtggatggtccatctgaagatggag 342
                |||||||||| |||||||||||||   || |||| ||||||||||||| |||||||||
Sbjct: 26868956 tcaccaccagaagatgatgatgatgaagcgcaaggggatggtccatctcaagatggag 26869013



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 408      cttcagcagacagatcctccatcaat 433
                ||||||||||| ||||||||||||||
Sbjct: 26869281 cttcagcagactgatcctccatcaat 26869306

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>emb|CR847978.17| Zebrafish DNA sequence from clone CH211-209D14 in linkage group 3,
             complete sequence
          Length = 194437

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 225   acaaacgatattctgaaaaatg 246
             ||||||||||||||||||||||
Sbjct: 33430 acaaacgatattctgaaaaatg 33451

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>gb|AC007018.7| Arabidopsis thaliana chromosome 2 clone F5G3 map RNS1, complete
            sequence
          Length = 124326

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 291  ccaccagcagatgatgatgatg 312
            ||||||||||||||||||||||
Sbjct: 3147 ccaccagcagatgatgatgatg 3126

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>gb|AY740087.1| Ostreococcus tauri CONSTANS-like protein gene, complete cds
          Length = 1475

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 99  ccgacggccgccgcgcgcgccg 120
           ||||||||||||||||||||||
Sbjct: 40  ccgacggccgccgcgcgcgccg 61

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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 98      gccgacggccgccgcgcgcgc 118
               |||||||||||||||||||||
Sbjct: 3173612 gccgacggccgccgcgcgcgc 3173632

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>ref|XM_473485.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1554

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 105 gccgccgcgcgcgccgaaggt 125
           |||||||||||||||||||||
Sbjct: 418 gccgccgcgcgcgccgaaggt 438

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>ref|XM_387331.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG07155.1)
            partial mRNA
          Length = 2034

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 194  gggggcattgcatgttgggca 214
            |||||||||||||||||||||
Sbjct: 1239 gggggcattgcatgttgggca 1219

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>emb|AL139423.25| Human DNA sequence from clone RP4-734G22 on chromosome 1 Contains the 3'
              end of the PEX14 gene for peroxisomal biogenesis factor 14,
              the 3' end of the gene for a novel protein (FLJ34970,
              FLJ20321, FLJ12223) and two CpG islands, complete sequence
          Length = 143285

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 99     ccgacggccgccgcgcgcgcc 119
              |||||||||||||||||||||
Sbjct: 103531 ccgacggccgccgcgcgcgcc 103551

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>emb|AL035701.13|HS8B1 Human DNA sequence from clone RP1-8B1 on chromosome 6p11.2-21.1
            Contains the ENPP5 gene for ectonucleotide
            pyrophosphatase/phosphodiesterase 5 (putative function),
            the  ENPP4 gene for ectonucleotide
            pyrophosphatase/phosphodiesterase 4 (putative function)
            (NPP4, KIAA0879) and a novel gene, complete sequence
          Length = 126956

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 279  gctcagtcgtcaccaccagca 299
            |||||||||||||||||||||
Sbjct: 4391 gctcagtcgtcaccaccagca 4371

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>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11,
             complete sequence
          Length = 147806

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 105   gccgccgcgcgcgccgaaggt 125
             |||||||||||||||||||||
Sbjct: 54684 gccgccgcgcgcgccgaaggt 54664

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>dbj|D50659.1| Homo sapiens ACTGP9 pseudogene, gamma-actin mRNA-corresponding
           region
          Length = 2659

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 279 gctcagtcgtcaccaccagca 299
           |||||||||||||||||||||
Sbjct: 184 gctcagtcgtcaccaccagca 204

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>ref|NG_001069.1| Homo sapiens actin, gamma pseudogene 9 (ACTGP9) on chromosome 6
          Length = 2659

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 279 gctcagtcgtcaccaccagca 299
           |||||||||||||||||||||
Sbjct: 184 gctcagtcgtcaccaccagca 204

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>gb|AF350318.1| Amaranthus tricolor copia-like retrotransposon C10, partial
           sequence
          Length = 1284

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 304 atgatgatgcacaagtggatg 324
           |||||||||||||||||||||
Sbjct: 907 atgatgatgcacaagtggatg 927

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 105      gccgccgcgcgcgccgaaggt 125
                |||||||||||||||||||||
Sbjct: 28047458 gccgccgcgcgcgccgaaggt 28047438

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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 103     cggccgccgcgcgcgccgaa 122
               ||||||||||||||||||||
Sbjct: 3126092 cggccgccgcgcgcgccgaa 3126111

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>ref|XM_705513.1| Candida albicans SC5314 putative U3 snoRNP protein Utp30
           (CaO19.154), mRNA
          Length = 1086

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 289 caccaccagcagatgatgatgatg 312
           |||||||| |||||||||||||||
Sbjct: 110 caccaccaccagatgatgatgatg 133

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>ref|XM_705499.1| Candida albicans SC5314 putative U3 snoRNP protein Utp30
           (CaO19.7793), mRNA
          Length = 1110

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 289 caccaccagcagatgatgatgatg 312
           |||||||| |||||||||||||||
Sbjct: 110 caccaccaccagatgatgatgatg 133

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>emb|AL772143.31| Zebrafish DNA sequence from clone CH211-158B22 in linkage group 20,
             complete sequence
          Length = 73696

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 295   cagcagatgatgatgatgca 314
             ||||||||||||||||||||
Sbjct: 58816 cagcagatgatgatgatgca 58835

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>emb|CR658347.2|CNS0F6Y9 Tetraodon nigroviridis full-length cDNA
          Length = 810

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 95  gctgccgacggccgccgcgcgcgc 118
           ||||||| ||||||||||||||||
Sbjct: 471 gctgccgccggccgccgcgcgcgc 448

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>ref|XM_661129.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.20231)
            partial mRNA
          Length = 4281

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 209  tgggcaaaccaaggaaacaa 228
            ||||||||||||||||||||
Sbjct: 1512 tgggcaaaccaaggaaacaa 1531

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>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome
          Length = 3523383

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 185     caaggagatgggggcattgcatgt 208
               |||||||||||||||||| |||||
Sbjct: 1857214 caaggagatgggggcatttcatgt 1857237

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>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16
          Length = 349876

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 100    cgacggccgccgcgcgcgcc 119
              ||||||||||||||||||||
Sbjct: 200417 cgacggccgccgcgcgcgcc 200398

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>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14
          Length = 348014

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 100    cgacggccgccgcgcgcgcc 119
              ||||||||||||||||||||
Sbjct: 112444 cgacggccgccgcgcgcgcc 112425

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>emb|BX640417.1| Bordetella pertussis strain Tohama I, complete genome; segment 7/12
          Length = 348934

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   cgacggccgccgcgcgcgcc 119
             ||||||||||||||||||||
Sbjct: 33791 cgacggccgccgcgcgcgcc 33772

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>gb|AC008763.9| Homo sapiens chromosome 19 clone CTD-3214H19, complete sequence
          Length = 177962

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 173    ggatgcagcaaccaaggagatggg 196
              |||||| |||||||||||||||||
Sbjct: 151488 ggatgctgcaaccaaggagatggg 151511

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>gb|AC009806.9| Homo sapiens chromosome 11, clone RP11-51B23, complete sequence
          Length = 175223

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 402   gactcccttcagcagacaga 421
             ||||||||||||||||||||
Sbjct: 89940 gactcccttcagcagacaga 89959

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>gb|AE005919.1| Caulobacter crescentus CB15 section 245 of 359 of the complete genome
          Length = 12011

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    gccgacggccgccgcgcgcg 117
             ||||||||||||||||||||
Sbjct: 11061 gccgacggccgccgcgcgcg 11042

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>gb|AC122145.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNAa0034B05, complete sequence
          Length = 125655

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 83    ccctgtgaccccgctgccgacggc 106
             ||||||||||||||| ||||||||
Sbjct: 33752 ccctgtgaccccgctcccgacggc 33775

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>gb|AC097446.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0034B05,
              complete sequence
          Length = 175061

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 83     ccctgtgaccccgctgccgacggc 106
              ||||||||||||||| ||||||||
Sbjct: 148813 ccctgtgaccccgctcccgacggc 148836

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 83      ccctgtgaccccgctgccgacggc 106
               ||||||||||||||| ||||||||
Sbjct: 3376968 ccctgtgaccccgctcccgacggc 3376991

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>gb|AC010578.5|AC010578 Drosophila melanogaster, chromosome 2R, region 51B-51C, BAC clone
              BACR03K23, complete sequence
          Length = 160346

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 289    caccaccagcagatgatgatgatg 312
              |||||||||||||||| |||||||
Sbjct: 145815 caccaccagcagatgaggatgatg 145792

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>gb|AC084537.1|CBRG26I17 Caenorhabditis briggsae cosmid G26I17, complete sequence
          Length = 19144

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 295   cagcagatgatgatgatgca 314
             ||||||||||||||||||||
Sbjct: 11069 cagcagatgatgatgatgca 11050

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>gb|AC008812.7|AC008812 Homo sapiens chromosome 19 clone CTD-2102F19, complete sequence
          Length = 143619

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 173   ggatgcagcaaccaaggagatggg 196
             |||||| |||||||||||||||||
Sbjct: 23786 ggatgctgcaaccaaggagatggg 23809

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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 100    cgacggccgccgcgcgcgcc 119
              ||||||||||||||||||||
Sbjct: 170993 cgacggccgccgcgcgcgcc 170974

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>gb|AE003813.3| Drosophila melanogaster chromosome 2R, section 37 of 73 of the complete
              sequence
          Length = 266851

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 289    caccaccagcagatgatgatgatg 312
              |||||||||||||||| |||||||
Sbjct: 238158 caccaccagcagatgaggatgatg 238135

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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 100     cgacggccgccgcgcgcgcc 119
               ||||||||||||||||||||
Sbjct: 2540357 cgacggccgccgcgcgcgcc 2540338

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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 93      ccgctgccgacggccgccgcgcgc 116
               |||||||||||||| |||||||||
Sbjct: 1531118 ccgctgccgacggcggccgcgcgc 1531095

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 83      ccctgtgaccccgctgccgacggc 106
               ||||||||||||||| ||||||||
Sbjct: 3376889 ccctgtgaccccgctcccgacggc 3376912

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>emb|AL954371.6| Zebrafish DNA sequence from clone CH211-207O15, complete sequence
          Length = 124954

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   aaaaatgcgtcagatagcaa 259
             ||||||||||||||||||||
Sbjct: 77634 aaaaatgcgtcagatagcaa 77653

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>gb|AC145948.5| Gallus gallus BAC clone CH261-24O17 from chromosome unknown, complete
             sequence
          Length = 242530

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   gacggccgccgcgcgcgccg 120
             ||||||||||||||||||||
Sbjct: 74724 gacggccgccgcgcgcgccg 74705


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,279,280
Number of Sequences: 3902068
Number of extensions: 4279280
Number of successful extensions: 96530
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95571
Number of HSP's gapped (non-prelim): 959
length of query: 460
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 438
effective length of database: 17,147,199,772
effective search space: 7510473500136
effective search space used: 7510473500136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result