| Clone Name | basd14a10 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X52572.1|HVBDG Barley DNA for (1-3,1-4)-beta-D-glucanase (EC 3.2.1.73) Length = 6260 Score = 886 bits (447), Expect = 0.0 Identities = 447/447 (100%) Strand = Plus / Plus Query: 13 acggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatca 72 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5404 acggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatca 5463 Query: 73 gcttctgatgaggtagcagctacctagtgcccgtatgtccgtacgtacgcgcgcgcgtat 132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5464 gcttctgatgaggtagcagctacctagtgcccgtatgtccgtacgtacgcgcgcgcgtat 5523 Query: 133 aagagcgtgtacgccgtacgtatgcgcacattatgtattgtacagggcttgggttgggaa 192 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5524 aagagcgtgtacgccgtacgtatgcgcacattatgtattgtacagggcttgggttgggaa 5583 Query: 193 cttgggatgcgaccgctgaggcagctcagatgcgtacgcgagtagtagtggcttgctata 252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5584 cttgggatgcgaccgctgaggcagctcagatgcgtacgcgagtagtagtggcttgctata 5643 Query: 253 ctagtgtaccagtacgtatgattttcgatggaagggaagcatatgcaaacgctccccctt 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5644 ctagtgtaccagtacgtatgattttcgatggaagggaagcatatgcaaacgctccccctt 5703 Query: 313 cctcgattgatcatgcacttgatacgtacacgcatgtgtgcgtacctaggaactatattg 372 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5704 cctcgattgatcatgcacttgatacgtacacgcatgtgtgcgtacctaggaactatattg 5763 Query: 373 tagggttcaaaatttcgtcaaaacttgacgaaatttgtccaaaataataaagtatgaaat 432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5764 tagggttcaaaatttcgtcaaaacttgacgaaatttgtccaaaataataaagtatgaaat 5823 Query: 433 atatcggcgaagaccgaatattcctat 459 ||||||||||||||||||||||||||| Sbjct: 5824 atatcggcgaagaccgaatattcctat 5850
>emb|X56260.1|HVGLUEND Barley DNA for (1,3;1,4)-beta-glucanase.(EC number 3.2.1.73) Length = 4643 Score = 858 bits (433), Expect = 0.0 Identities = 444/447 (99%), Gaps = 3/447 (0%) Strand = Plus / Plus Query: 13 acggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatca 72 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3997 acggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatca 4056 Query: 73 gcttctgatgaggtagcagctacctagtgcccgtatgtccgtacgtacgcgcgcgcgtat 132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4057 gcttctgatgaggtagcagctacctagtgcccgtatgtccgtacgtacgcgcgcgcgtat 4116 Query: 133 aagagcgtgtacgccgtacgtatgcgcacattatgtattgtacagggcttgggttgggaa 192 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4117 aagagcgtgtacgccgtacgtatgcgcacattatgtattgtacagggcttgggttgggaa 4176 Query: 193 cttgggatgcgaccgctgaggcagctcagatgcgtacgcgagtagtagtggcttgctata 252 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 4177 cttgggatgcgaccgctgaggcagctcagatgcgtacgcg---agtagtggcttgctata 4233 Query: 253 ctagtgtaccagtacgtatgattttcgatggaagggaagcatatgcaaacgctccccctt 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4234 ctagtgtaccagtacgtatgattttcgatggaagggaagcatatgcaaacgctccccctt 4293 Query: 313 cctcgattgatcatgcacttgatacgtacacgcatgtgtgcgtacctaggaactatattg 372 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4294 cctcgattgatcatgcacttgatacgtacacgcatgtgtgcgtacctaggaactatattg 4353 Query: 373 tagggttcaaaatttcgtcaaaacttgacgaaatttgtccaaaataataaagtatgaaat 432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4354 tagggttcaaaatttcgtcaaaacttgacgaaatttgtccaaaataataaagtatgaaat 4413 Query: 433 atatcggcgaagaccgaatattcctat 459 ||||||||||||||||||||||||||| Sbjct: 4414 atatcggcgaagaccgaatattcctat 4440
>emb|X56775.1|HVGLB1 H.vulgare Glb 1 gene for 1-3,1-4-beta-D-glucanase Length = 4849 Score = 842 bits (425), Expect = 0.0 Identities = 443/447 (99%), Gaps = 4/447 (0%) Strand = Plus / Plus Query: 13 acggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatca 72 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4397 acggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatca 4456 Query: 73 gcttctgatgaggtagcagctacctagtgcccgtatgtccgtacgtacgcgcgcgcgtat 132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4457 gcttctgatgaggtagcagctacctagtgcccgtatgtccgtacgtacgcgcgcgcgtat 4516 Query: 133 aagagcgtgtacgccgtacgtatgcgcacattatgtattgtacagggcttgggttgggaa 192 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4517 aagagcgtgtacgccgtacgtatgcgcacattatgtattgtacagggcttgggttgggaa 4576 Query: 193 cttgggatgcgaccgctgaggcagctcagatgcgtacgcgagtagtagtggcttgctata 252 ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 4577 cttgggatgcgaccgctgaggcagctcagat-cgtacgcgagtagt---ggcttgctata 4632 Query: 253 ctagtgtaccagtacgtatgattttcgatggaagggaagcatatgcaaacgctccccctt 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4633 ctagtgtaccagtacgtatgattttcgatggaagggaagcatatgcaaacgctccccctt 4692 Query: 313 cctcgattgatcatgcacttgatacgtacacgcatgtgtgcgtacctaggaactatattg 372 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4693 cctcgattgatcatgcacttgatacgtacacgcatgtgtgcgtacctaggaactatattg 4752 Query: 373 tagggttcaaaatttcgtcaaaacttgacgaaatttgtccaaaataataaagtatgaaat 432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4753 tagggttcaaaatttcgtcaaaacttgacgaaatttgtccaaaataataaagtatgaaat 4812 Query: 433 atatcggcgaagaccgaatattcctat 459 ||||||||||||||||||||||||||| Sbjct: 4813 atatcggcgaagaccgaatattcctat 4839
>emb|Z22873.1|TABETGLUA T.aestivum beta glucanase mRNA, complete CDS Length = 1434 Score = 406 bits (205), Expect = e-110 Identities = 399/460 (86%), Gaps = 34/460 (7%) Strand = Plus / Plus Query: 14 cggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatcag 73 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 975 cggcgtggagcagaactggggactcttctaccccaacatgcagcacgtctaccccatcag 1034 Query: 74 cttctgatgaggtagcagc-------tacctagtgcccgtatgtccgtacgtacgcgcgc 126 ||||||||||| |||| || || |||||| |||||||||||| ||||||||||| Sbjct: 1035 cttctgatgagctagctgcgtatgcgtagctagtgtccgtatgtccgtccgtacgcgcgc 1094 Query: 127 g------cgtataagagcgtgtacgccgtacgtatgcgcacattatgtattgtacagggc 180 | |||||||||||||||| |||||||||||| ||||||||||||||||||||||| Sbjct: 1095 gtacacgcgtataagagcgtgtatgccgtacgtatgtgcacattatgtattgtacagggc 1154 Query: 181 ttgggttgggaacttgggatgcgaccgctgaggcagctcagatgcgtacgcgagtagtag 240 ||||||||| | ||||||||||||||||||||||| |||||||||| |||||| Sbjct: 1155 ttgggttgg--------ggtgcgaccgctgaggcagctcagacgcgtacgcga-tagtag 1205 Query: 241 tggcttgctatactagtgtaccagtacgtatgattttcgatggaagggaagcatatgcaa 300 ||| |||||||| ||||||| | ||||||||| ||||||||||| ||| ||| || Sbjct: 1206 tggtttgctatagtagtgta----tgtgtatgatttacgatggaaggggggcagatgtaa 1261 Query: 301 acgctcccccttcctcgattgatcatgcacttgatacgtacacgcatgtgtgcgtaccta 360 |||||| |||||| |||||| |||||||| |||||||| |||| |||||||||||| || Sbjct: 1262 acgctctcccttcgtcgattcatcatgcatttgatacgcacacacatgtgtgcgtaagta 1321 Query: 361 ggaactatattgtagggttcaaaatttcgtcaaaacttgacgaaatttgtccaaaataat 420 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1322 g-aactatattgtagggttcaaaatttcgtcaaaacttgacgaaatttgtccaaaataa- 1379 Query: 421 aaagtatgaaatatatcggcgaagaccgaa-tattcctat 459 ||||||||||||||||| |||||||| ||||||||| Sbjct: 1380 ----tatgaaatatatcggcg-agaccgaagtattcctat 1414
>emb|Z22874.1|TABETGLUB T.aestivum (1,3;1,4) beta glucanase mRNA, complete CDS Length = 1426 Score = 387 bits (195), Expect = e-104 Identities = 381/442 (86%), Gaps = 32/442 (7%) Strand = Plus / Plus Query: 14 cggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatcag 73 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 989 cggcgtggagcagaactggggactcttctaccccaacatgcagcacgtctaccccatcag 1048 Query: 74 cttctgatgaggtagcagc-------tacctagtgcccgtatgtccgtacgtacgcgcgc 126 ||||||||||| |||| || || |||||| |||||||||||||||||||||||| Sbjct: 1049 cttctgatgagctagctgcgtatgcgtagctagtgtccgtatgtccgtacgtacgcgcgc 1108 Query: 127 g------cgtataagagcgtgtacgccgtacgtatgcgcacattatgtattgtacagggc 180 | |||||||||||||||| || ||||||||| |||||||||||||||||||||| Sbjct: 1109 gtacacgcgtataagagcgtgtatgcggtacgtatgtgcacattatgtattgtacagggt 1168 Query: 181 ttgggttgggaacttgggatgcgaccgctgaggcagctcagatgcgtacgcgagtagtag 240 ||||||||| | |||||||||||||||||||||||||||||||| | |||||| Sbjct: 1169 ttgggttgg--------ggtgcgaccgctgaggcagctcagatgcgtacgcta-tagtag 1219 Query: 241 tggcttgctatactagtgtaccagtacgtatgattttcgatggaagggaagcatatgcaa 300 ||| ||||| || ||||||| | ||||||||| |||||||||||||||| ||| || Sbjct: 1220 tggtttgctgtagtagtgta----tgtgtatgatttacgatggaagggaagcagatgtaa 1275 Query: 301 acgctcccccttcctcgattgatcatgcacttgatacgtacacgcatgtgtgcgtaccta 360 |||||| |||||| |||||| ||||| || ||||||||||||| |||||||||||| || Sbjct: 1276 acgctctcccttcgtcgattcatcatacatttgatacgtacacacatgtgtgcgtaagta 1335 Query: 361 ggaactatattgtagggttcaaaatttcgtcaaaacttgacgaaatttgtccaaaataat 420 |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct: 1336 -gaactatattgtagggttcaaaatttcgtcaaaatttgacggaatttgtccaaaataa- 1393 Query: 421 aaagtatgaaatatatcggcga 442 |||||||||||||||||| Sbjct: 1394 ----tatgaaatatatcggcga 1411
>emb|Z15131.1|ASBGLUCAN A.sativa mRNA for beta glucanase Length = 1448 Score = 137 bits (69), Expect = 4e-29 Identities = 69/69 (100%) Strand = Plus / Plus Query: 13 acggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatca 72 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 965 acggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatca 1024 Query: 73 gcttctgat 81 ||||||||| Sbjct: 1025 gcttctgat 1033 Score = 52.0 bits (26), Expect = 0.002 Identities = 39/42 (92%), Gaps = 1/42 (2%) Strand = Plus / Plus Query: 127 gcgtataagagcgtgtacgccgtacgtatgcgcacattatgt 168 ||||||||| |||||||||| ||||||||| ||||||||||| Sbjct: 1099 gcgtataagggcgtgtacgc-gtacgtatgtgcacattatgt 1139
>gb|AY109289.1| Zea mays PCO135820 mRNA sequence Length = 976 Score = 133 bits (67), Expect = 6e-28 Identities = 67/67 (100%) Strand = Plus / Plus Query: 14 cggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatcag 73 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 416 cggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatcag 475 Query: 74 cttctga 80 ||||||| Sbjct: 476 cttctga 482
>gb|M62740.1|BLYGLB2 Hordeum vulgare 1,3-1,4-beta-D glucan 4-glucanohydrolase (Glb 2) gene, intron 1 Length = 5159 Score = 117 bits (59), Expect = 3e-23 Identities = 65/67 (97%) Strand = Plus / Plus Query: 14 cggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatcag 73 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 4926 cggcgtggagcagaactggggactcttctaccccaacatgcagcacgtctaccccatcaa 4985 Query: 74 cttctga 80 ||||||| Sbjct: 4986 cttctga 4992
>gb|AY768944.1| Oryza sativa (japonica cultivar-group) endo-1,3;1,4-beta-glucanase mRNA, complete cds Length = 1579 Score = 113 bits (57), Expect = 5e-22 Identities = 66/69 (95%) Strand = Plus / Plus Query: 14 cggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatcag 73 |||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1050 cggcgtcgagcagaattggggcctcttctaccccaacatgcagcacgtctaccccatcag 1109 Query: 74 cttctgatg 82 ||||||||| Sbjct: 1110 cttctgatg 1118
>gb|AC108874.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_E12, complete sequence Length = 121293 Score = 113 bits (57), Expect = 5e-22 Identities = 66/69 (95%) Strand = Plus / Minus Query: 14 cggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatcag 73 |||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 93261 cggcgtcgagcagaattggggcctcttctaccccaacatgcagcacgtctaccccatcag 93202 Query: 74 cttctgatg 82 ||||||||| Sbjct: 93201 cttctgatg 93193
>emb|X58877.1|OSGNS1 Oryza sativa gns1 gene for beta-glucanase Length = 6614 Score = 113 bits (57), Expect = 5e-22 Identities = 66/69 (95%) Strand = Plus / Plus Query: 14 cggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatcag 73 |||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 5372 cggcgtcgagcagaattggggcctcttctaccccaacatgcagcacgtctaccccatcag 5431 Query: 74 cttctgatg 82 ||||||||| Sbjct: 5432 cttctgatg 5440
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 113 bits (57), Expect = 5e-22 Identities = 66/69 (95%) Strand = Plus / Minus Query: 14 cggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatcag 73 |||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 17962512 cggcgtcgagcagaattggggcctcttctaccccaacatgcagcacgtctaccccatcag 17962453 Query: 74 cttctgatg 82 ||||||||| Sbjct: 17962452 cttctgatg 17962444
>gb|AF323610.1|AF323610 Oryza sativa glucanase (GLU) mRNA, complete cds Length = 1573 Score = 113 bits (57), Expect = 5e-22 Identities = 66/69 (95%) Strand = Plus / Plus Query: 14 cggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatcag 73 |||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1036 cggcgtcgagcagaattggggcctcttctaccccaacatgcagcacgtctaccccatcag 1095 Query: 74 cttctgatg 82 ||||||||| Sbjct: 1096 cttctgatg 1104
>dbj|AK121825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033099G01, full insert sequence Length = 1606 Score = 113 bits (57), Expect = 5e-22 Identities = 66/69 (95%) Strand = Plus / Plus Query: 14 cggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatcag 73 |||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1070 cggcgtcgagcagaattggggcctcttctaccccaacatgcagcacgtctaccccatcag 1129 Query: 74 cttctgatg 82 ||||||||| Sbjct: 1130 cttctgatg 1138
>dbj|AK060867.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-H03, full insert sequence Length = 1565 Score = 113 bits (57), Expect = 5e-22 Identities = 66/69 (95%) Strand = Plus / Plus Query: 14 cggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatcag 73 |||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1066 cggcgtcgagcagaattggggcctcttctaccccaacatgcagcacgtctaccccatcag 1125 Query: 74 cttctgatg 82 ||||||||| Sbjct: 1126 cttctgatg 1134
>ref|XM_475161.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1005 Score = 109 bits (55), Expect = 8e-21 Identities = 64/67 (95%) Strand = Plus / Plus Query: 14 cggcgtggagcagaactgggggctcttctaccccaacatgcagcacgtctaccccatcag 73 |||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 939 cggcgtcgagcagaattggggcctcttctaccccaacatgcagcacgtctaccccatcag 998 Query: 74 cttctga 80 ||||||| Sbjct: 999 cttctga 1005
>ref|NM_189726.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 966 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 9 gaggacggcgtggagcagaactgggggctcttctacccca 48 |||| ||||||||||||||| ||||| ||||||||||||| Sbjct: 883 gaggccggcgtggagcagaattggggcctcttctacccca 922
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 9 gaggacggcgtggagcagaactgggggctcttctacccca 48 |||| ||||||||||||||| ||||| ||||||||||||| Sbjct: 41390566 gaggccggcgtggagcagaattggggcctcttctacccca 41390527
>dbj|AP004031.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0432C03 Length = 164394 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 9 gaggacggcgtggagcagaactgggggctcttctacccca 48 |||| ||||||||||||||| ||||| ||||||||||||| Sbjct: 82059 gaggccggcgtggagcagaattggggcctcttctacccca 82020
>dbj|AK063126.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-F01, full insert sequence Length = 494 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 9 gaggacggcgtggagcagaactgggggctcttctacccca 48 |||| ||||||||||||||| ||||| ||||||||||||| Sbjct: 338 gaggccggcgtggagcagaattggggcctcttctacccca 377
>gb|AF241159.1| Trypanosoma cruzi clone FGz 73 kinetoplast minicircle DNA, partial sequence Length = 322 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 373 tagggttcaaaatttcgtcaaaacttg 399 |||||||||||||||||| |||||||| Sbjct: 237 tagggttcaaaatttcgtgaaaacttg 263
>emb|AL355303.16| Human DNA sequence from clone RP11-445P17 on chromosome 10 Contains the 5' end of the gene for a novel protein similar to aldo-keto reductase, the AKR1C4 gene for aldo-keto reductase family 1 member C4, a novel gene, an aldo-keto reductase pseudogene, a ribosomal protein L26 (RPL26) pseudogene, an ADP-ribosylation factor-like 4 (ARL4) pseudogene,. a novel gene and a CpG island, complete sequence Length = 145692 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 413 aaaataataaagtatgaaatat 434 |||||||||||||||||||||| Sbjct: 71054 aaaataataaagtatgaaatat 71075
>gb|AC127354.4| Mus musculus BAC clone RP23-91C8 from chromosome 6, complete sequence Length = 197318 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 366 tatattgtagggttcaaaatt 386 ||||||||||||||||||||| Sbjct: 196011 tatattgtagggttcaaaatt 195991
>gb|AC022675.7| Mus musculus chromosome 1, clone RP23-59N15, complete sequence Length = 181063 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 152 gtatgcgcacattatgtattg 172 ||||||||||||||||||||| Sbjct: 45237 gtatgcgcacattatgtattg 45217
>gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0007B15 map S10318, complete sequence Length = 125243 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 181 ttgggttgggaacttgggatg 201 ||||||||||||||||||||| Sbjct: 25490 ttgggttgggaacttgggatg 25470
>gb|AC132955.3| Mus musculus BAC clone RP24-266J20 from chromosome 6, complete sequence Length = 174507 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 366 tatattgtagggttcaaaatt 386 ||||||||||||||||||||| Sbjct: 159480 tatattgtagggttcaaaatt 159500
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 413 aaaataataaagtatgaaata 433 ||||||||||||||||||||| Sbjct: 25532485 aaaataataaagtatgaaata 25532465
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 181 ttgggttgggaacttgggatg 201 ||||||||||||||||||||| Sbjct: 3431535 ttgggttgggaacttgggatg 3431515
>gb|AF433637.1| Oryza sativa clone OsMu10-1 transposon Mu-like repeat region Length = 1143 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 ttgggttgggaacttgggatg 201 ||||||||||||||||||||| Sbjct: 805 ttgggttgggaacttgggatg 825
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 181 ttgggttgggaacttgggatg 201 ||||||||||||||||||||| Sbjct: 3440239 ttgggttgggaacttgggatg 3440219
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 413 aaaataataaagtatgaaata 433 ||||||||||||||||||||| Sbjct: 25460661 aaaataataaagtatgaaata 25460641
>emb|AL928781.4|CNS08CCB Oryza sativa chromosome 12, . BAC OSJNBa0070E09 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144084 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 413 aaaataataaagtatgaaata 433 ||||||||||||||||||||| Sbjct: 101867 aaaataataaagtatgaaata 101847
>emb|AL365314.16| Mouse DNA sequence from clone RP23-106N23 on chromosome 1, complete sequence Length = 182054 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 152 gtatgcgcacattatgtattg 172 ||||||||||||||||||||| Sbjct: 176164 gtatgcgcacattatgtattg 176184
>gb|AC164981.2| Mus musculus BAC clone RP23-121F5 from chromosome 17, complete sequence Length = 243701 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 ataataaagtatgaaatata 435 |||||||||||||||||||| Sbjct: 236246 ataataaagtatgaaatata 236227
>gb|AC132446.3| Mus musculus BAC clone RP23-175K4 from chromosome 12, complete sequence Length = 190088 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 tttgtccaaaataataaagt 425 |||||||||||||||||||| Sbjct: 57042 tttgtccaaaataataaagt 57061
>gb|AC068006.10| Mus musculus chromosome 7, clone RP23-6I17, complete sequence Length = 203141 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 ggcttgggttgggaacttgg 197 |||||||||||||||||||| Sbjct: 97521 ggcttgggttgggaacttgg 97502
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 cttgggttgggaacttggga 199 |||||||||||||||||||| Sbjct: 34127729 cttgggttgggaacttggga 34127748
>gb|AC113476.20| Mus musculus chromosome 17, clone RP23-304J1, complete sequence Length = 227026 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 ataataaagtatgaaatata 435 |||||||||||||||||||| Sbjct: 170480 ataataaagtatgaaatata 170499
>gb|AC108477.5| Homo sapiens BAC clone RP11-499F19 from 4, complete sequence Length = 164194 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 taggaactatattgtagggt 378 |||||||||||||||||||| Sbjct: 94366 taggaactatattgtagggt 94347
>emb|CR383660.9| Zebrafish DNA sequence from clone DKEY-1H22 in linkage group 14, complete sequence Length = 139631 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 caaaataataaagtatgaaa 431 |||||||||||||||||||| Sbjct: 38450 caaaataataaagtatgaaa 38431
>emb|AL096803.8|HSBG304P7 Human DNA sequence from clone GS1-304P7 on chromosome 1q25.1-31.1 Contains a zinc-finger protein pseudogene and a novel pseudogene, complete sequence Length = 129723 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 cttgggttgggaacttggga 199 |||||||||||||||||||| Sbjct: 114324 cttgggttgggaacttggga 114305
>emb|AL645527.20| Mouse DNA sequence from clone RP23-26L6 on chromosome 11 Contains the Vamp2 gene for vesicle-associated membrane 2, the Per1 gene for period homolog 1 (Drosophila), the Hes7 gene for hairy and enhancer of split 7 (Drosophila), the Aloxe3 gene for arachidonate lipoxygenase 3, the Alox12b gene for arachidonate 12-lipoxygenase 12R type, the Alox15b gene for arachidonate 15-lipoxygenase second type, the Gucy2e gene for guanylate cyclase 2e, a novel gene, the gene for LYST-interacting protein LIP8 (Lip8-pending), the gene for the likely ortholog of H. sapiens trafficking protein particle complex 1 (TRAPPC1)), the Kcnab3 gene for potassium voltage-gated channel shaker-related subfamily beta member 3, a novel gene, the 3' end of the Chd3 gene for chromodomain helicase DNA binding protein 3 and six CpG islands, complete sequence Length = 261224 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 aggaactatattgtagggtt 379 |||||||||||||||||||| Sbjct: 121070 aggaactatattgtagggtt 121051
>emb|AL008970.3|PFMAL3P4 Plasmodium falciparum MAL3P4 Length = 113880 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 aaataataaagtatgaaata 433 |||||||||||||||||||| Sbjct: 2537 aaataataaagtatgaaata 2518
>emb|AJ276505.2|MMU276505 Mus musculus genomic fragment, 281000 bp, chromosome 7 Length = 281000 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 ggcttgggttgggaacttgg 197 |||||||||||||||||||| Sbjct: 125348 ggcttgggttgggaacttgg 125367
>emb|BX511155.25| Zebrafish DNA sequence from clone DKEY-56D18 in linkage group 19, complete sequence Length = 205235 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 413 aaaataataaagtatgaaat 432 |||||||||||||||||||| Sbjct: 190026 aaaataataaagtatgaaat 190045
>emb|BX548054.19| Zebrafish DNA sequence from clone CH211-237N4 in linkage group 14, complete sequence Length = 128658 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 412 caaaataataaagtatgaaa 431 |||||||||||||||||||| Sbjct: 79486 caaaataataaagtatgaaa 79505
>gb|AC068892.7| Homo sapiens chromosome 10 clone RP11-116D21, complete sequence Length = 161178 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 397 ttgacgaaatttgtccaaaataat 420 |||| ||||||||||||||||||| Sbjct: 22805 ttgaggaaatttgtccaaaataat 22782
>gb|AC084763.4| Oryza sativa chromosome 10 BAC OSJNBa0027P10 genomic sequence, complete sequence Length = 141307 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 tgggttgggaacttgggatg 201 |||||||||||||||||||| Sbjct: 31957 tgggttgggaacttgggatg 31976
>dbj|AK086225.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930014O14 product:unclassifiable, full insert sequence Length = 2796 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 aataataaagtatgaaatat 434 |||||||||||||||||||| Sbjct: 577 aataataaagtatgaaatat 596
>dbj|AK086224.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930014O13 product:unclassifiable, full insert sequence Length = 2795 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 aataataaagtatgaaatat 434 |||||||||||||||||||| Sbjct: 577 aataataaagtatgaaatat 596
>gb|AC158635.6| Mus musculus 10 BAC RP23-396A23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 183931 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 405 atttgtccaaaataataaag 424 |||||||||||||||||||| Sbjct: 86035 atttgtccaaaataataaag 86054
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 tgggttgggaacttgggatg 201 |||||||||||||||||||| Sbjct: 21717274 tgggttgggaacttgggatg 21717293
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 cttgggttgggaacttggga 199 |||||||||||||||||||| Sbjct: 34218201 cttgggttgggaacttggga 34218220
>gb|AC090386.13| Homo sapiens chromosome 18, clone RP11-797E24, complete sequence Length = 185563 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 gtggagcagaactgggggct 37 |||||||||||||||||||| Sbjct: 61917 gtggagcagaactgggggct 61936
>gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete sequence Length = 163828 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 cttgggttgggaacttggga 199 |||||||||||||||||||| Sbjct: 91541 cttgggttgggaacttggga 91560
>gb|AC084659.1|CBRG46N07 Caenorhabditis briggsae cosmid G46N07, complete sequence Length = 13350 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 412 caaaataataaagtatgaaatata 435 |||||||| ||||||||||||||| Sbjct: 1013 caaaataacaaagtatgaaatata 990
>ref|XM_573224.1| PREDICTED: Rattus norvegicus similar to Lethal giant larvae homolog 2 (LOC360661), mRNA Length = 8565 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 atgcgaccgctgaggcagct 218 |||||||||||||||||||| Sbjct: 792 atgcgaccgctgaggcagct 773
>gb|AY009938.2| Hordeum vulgare subsp. vulgare MLA1-2 (Mla1-2) gene, partial cds; and MLA1 (Mla1) gene, complete cds Length = 18958 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 417 taataaagtatgaaatatat 436 |||||||||||||||||||| Sbjct: 6371 taataaagtatgaaatatat 6352
>emb|BX005258.11| Zebrafish DNA sequence from clone DKEY-77I24 in linkage group 17, complete sequence Length = 193078 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 363 aactatattgtagggttcaaaatt 386 ||||| |||||||||||||||||| Sbjct: 114679 aactacattgtagggttcaaaatt 114656
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 tgggttgggaacttgggatg 201 |||||||||||||||||||| Sbjct: 21728937 tgggttgggaacttgggatg 21728956
>gb|AC153605.2| Mus musculus 6 BAC RP23-346H23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 229744 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 aataataaagtatgaaatat 434 |||||||||||||||||||| Sbjct: 129471 aataataaagtatgaaatat 129452
>dbj|D86600.2| Loligo bleekeri mRNA for voltage-dependent calcium channel, complete cds Length = 7113 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 ccaaaataataaagtatgaa 430 |||||||||||||||||||| Sbjct: 2405 ccaaaataataaagtatgaa 2386 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,089,731 Number of Sequences: 3902068 Number of extensions: 3089731 Number of successful extensions: 53845 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53534 Number of HSP's gapped (non-prelim): 304 length of query: 469 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 447 effective length of database: 17,147,199,772 effective search space: 7664798298084 effective search space used: 7664798298084 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)