>dbj|AB042069.1| Triticum aestivum rbcS gene for ribulose-1,5-bisphosphate
            carboxylase/oxygenase small subunit, complete cds,
            clone:6, subclone:16
          Length = 5980

 Score =  250 bits (126), Expect = 2e-63
 Identities = 214/240 (89%), Gaps = 10/240 (4%)
 Strand = Plus / Plus

                                                                        
Query: 6    taaactacgaggtgaaagaatggcctatgtcgtatgaaggtcttttgtgaacttcacttt 65
            ||||||||||| | ||| ||||||||||||   ||||  |||||||||||||||||||||
Sbjct: 1261 taaactacgagttaaaacaatggcctatgt---atgattgtcttttgtgaacttcacttt 1317

                                                                        
Query: 66   tgtccacgactctgctttccgaccagagcataattttc-ttctctatgatctgtgtatgt 124
            |||||| |||||||||| |||||||||||||| ||||| |||  |||||||||||| |||
Sbjct: 1318 tgtccaggactctgcttcccgaccagagcatatttttccttcggtatgatctgtgtttgt 1377

                                                                        
Query: 125  acgagcataggttgtggagcatatatgcatatgtaaattctagcaccgcctacacatata 184
            |||| |||||||||||||||||    |||||||||||||||||||||| |||||||||||
Sbjct: 1378 acgaacataggttgtggagcat----gcatatgtaaattctagcaccggctacacatata 1433

                                                                        
Query: 185  caacacctgtgtcatatttataatatatacaacaagcggaccattgtcttgctgttaatt 244
            ||||||| |||| ||||||||  ||||||||||||||||||||||||| |||||||||||
Sbjct: 1434 caacaccagtgtgatatttat--tatatacaacaagcggaccattgtcctgctgttaatt 1491



 Score =  180 bits (91), Expect = 1e-42
 Identities = 204/237 (86%), Gaps = 11/237 (4%)
 Strand = Plus / Plus

                                                                        
Query: 9    actacgaggtgaaagaatggcctatgtcgtatgaaggtcttttgtgaacttcacttttgt 68
            |||| ||| ||||| ||||||||||||   | |||||||||||||||||||||||||| |
Sbjct: 5668 actatgagttgaaacaatggcctatgt---acgaaggtcttttgtgaacttcacttttct 5724

                                                                        
Query: 69   ccacgactctgctttccgaccagagcataattttc-ttctctatgatctgtgtatgtacg 127
            |||||||||||| | || ||||||||||| ||||| |||| ||| || ||||||||||||
Sbjct: 5725 ccacgactctgc-tgcctaccagagcatatttttcgttctgtataatatgtgtatgtacg 5783

                                                                        
Query: 128  agcataggttgtggagcatatatgcatatgtaaattctagcaccgcctacacatatacaa 187
            | ||| |||||||||||     ||||| ||||||||||||||| | ||||||||||||||
Sbjct: 5784 aacattggttgtggagc----gtgcatgtgtaaattctagcactgactacacatatacaa 5839

                                                                     
Query: 188  cacctgtgtcatatttataatatatacaacaagcggaccattgtcttgctgttaatt 244
            ||||| ||| ||||||||  |||||||| |||||| || ||||||||||||||||||
Sbjct: 5840 cacctatgtgatatttat--tatatacagcaagcgaactattgtcttgctgttaatt 5894



 Score =  180 bits (91), Expect = 1e-42
 Identities = 171/194 (88%), Gaps = 9/194 (4%)
 Strand = Plus / Plus

                                                                        
Query: 52   gtgaacttcacttttgtccacgactctgctttccgaccagagcataa-ttttcttctcta 110
            ||||||||||||||| ||||||||||||||||||||||  ||||||| |||| |||| ||
Sbjct: 4358 gtgaacttcacttttctccacgactctgctttccgacctaagcataatttttgttctgta 4417

                                                                        
Query: 111  tgatctgtgtatgtacgagcataggttgtggagcatatatgcatatgtaaattctagcac 170
            |||||||||||||||| | |||||||||||||||    |||||| |||||| ||||||||
Sbjct: 4418 tgatctgtgtatgtacaaacataggttgtggagc----atgcatgtgtaaactctagcac 4473

                                                                        
Query: 171  cgcctacacatatacaacacctgtgtcatatttataatatatacaacaagcggaccattg 230
            || ||  |||||||||||||  |||| ||| ||||  |||||||||||||||||||||||
Sbjct: 4474 cggct--acatatacaacactggtgtgataattat--tatatacaacaagcggaccattg 4529

                          
Query: 231  tcttgctgttaatt 244
            ||||||||||||||
Sbjct: 4530 tcttgctgttaatt 4543

>gb|M37328.1|WHTRUBIAA T.aestivum ribulose-1,5-bisphosphate carboxylase/oxygenase (RUBISCO)
            gene, exons 1 and 2
          Length = 2205

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 64/70 (91%)
 Strand = Plus / Plus

                                                                        
Query: 6    taaactacgaggtgaaagaatggcctatgtcgtatgaaggtcttttgtgaacttcacttt 65
            ||||||| ||| ||||| |||||||||| || ||||||| ||||||||||||||||||||
Sbjct: 1507 taaactatgagttgaaacaatggcctatctcatatgaagatcttttgtgaacttcacttt 1566

                      
Query: 66   tgtccacgac 75
            ||||||||||
Sbjct: 1567 tgtccacgac 1576



 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 56/63 (88%), Gaps = 2/63 (3%)
 Strand = Plus / Plus

                                                                        
Query: 179  catatacaacacctgtgtcatatttataatatatacaacaagcggaccattgtcttgctg 238
            ||||| ||| |||||||| |||||| |  ||||||||||| |||||||||||||||||||
Sbjct: 1706 catatgcaaaacctgtgtaatatttgt--tatatacaacacgcggaccattgtcttgctg 1763

               
Query: 239  tta 241
            |||
Sbjct: 1764 tta 1766



 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 51/57 (89%), Gaps = 1/57 (1%)
 Strand = Plus / Plus

                                                                     
Query: 70   cacgactctgctttccgaccagagcata-attttcttctctatgatctgtgtatgta 125
            |||||||||||||||||||| |||||||  |||| |||| |||||| ||||||||||
Sbjct: 1585 cacgactctgctttccgaccggagcataccttttgttctatatgatttgtgtatgta 1641

>gb|AC092642.2| Homo sapiens BAC clone RP11-391P1 from 2, complete sequence
          Length = 152251

 Score = 46.1 bits (23), Expect = 0.053
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 143    gcatatatgcatatgtaaattct 165
              |||||||||||||||||||||||
Sbjct: 124198 gcatatatgcatatgtaaattct 124176

>emb|AL772245.7| Mouse DNA sequence from clone RP23-332K6 on chromosome 4, complete
             sequence
          Length = 70508

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 143   gcatatatgcatatgtaaatt 163
             |||||||||||||||||||||
Sbjct: 46393 gcatatatgcatatgtaaatt 46373

>emb|AL596456.15| Mouse DNA sequence from clone RP23-353K20 on chromosome 11, complete
              sequence
          Length = 228428

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 144    catatatgcatatgtaaattc 164
              |||||||||||||||||||||
Sbjct: 158764 catatatgcatatgtaaattc 158744

>ref|NM_104705.2| Arabidopsis thaliana ATTPS10; transferase, transferring glycosyl
           groups / trehalose-phosphatase AT1G60140 (ATTPS10) mRNA,
           complete cds
          Length = 3101

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 48  ttttgtgaacttcacttttg 67
           ||||||||||||||||||||
Sbjct: 106 ttttgtgaacttcacttttg 125

>gb|AC135567.3| Mus musculus BAC clone RP23-312I24 from chromosome 16, complete
             sequence
          Length = 208603

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 143   gcatatatgcatatgtaaat 162
             ||||||||||||||||||||
Sbjct: 85748 gcatatatgcatatgtaaat 85767

>ref|XM_845494.1| PREDICTED: Canis familiaris similar to tripartite motif protein 24
           (LOC608463), partial mRNA
          Length = 267

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 44  ggtcttttgtgaacttcact 63
           ||||||||||||||||||||
Sbjct: 234 ggtcttttgtgaacttcact 215

>ref|XM_843482.1| PREDICTED: Canis familiaris similar to tripartite motif protein 24
           (LOC606986), partial mRNA
          Length = 267

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 44  ggtcttttgtgaacttcact 63
           ||||||||||||||||||||
Sbjct: 234 ggtcttttgtgaacttcact 215

>gb|AC133967.2| Mus musculus BAC clone RP23-14J5 from chromosome 16, complete sequence
          Length = 195446

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 143    gcatatatgcatatgtaaat 162
              ||||||||||||||||||||
Sbjct: 152885 gcatatatgcatatgtaaat 152904

>ref|XM_847054.1| PREDICTED: Canis familiaris similar to Transcription intermediary
           factor 1-alpha (TIF1-alpha) (Tripartite motif protein
           24) (RING finger protein 82) (LOC609728), mRNA
          Length = 1110

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 44  ggtcttttgtgaacttcact 63
           ||||||||||||||||||||
Sbjct: 604 ggtcttttgtgaacttcact 585

>ref|XM_718658.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY03582)
           partial mRNA
          Length = 2811

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 198 atatttataatatatacaac 217
           ||||||||||||||||||||
Sbjct: 167 atatttataatatatacaac 186

>gb|DP000038.2| Colobus guereza target 106 genomic scaffold
          Length = 481828

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 190    cctgtgtcatatttataata 209
              ||||||||||||||||||||
Sbjct: 378190 cctgtgtcatatttataata 378209

>emb|CR450692.5| Zebrafish DNA sequence from clone CH211-198J13 in linkage group 2,
              complete sequence
          Length = 180976

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 197    catatttataatatatacaa 216
              ||||||||||||||||||||
Sbjct: 116841 catatttataatatatacaa 116822

>ref|XM_964469.1| PREDICTED: Tribolium castaneum similar to CG11926-PA (LOC658056),
            mRNA
          Length = 1723

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 197  catatttataatatatacaa 216
            ||||||||||||||||||||
Sbjct: 1618 catatttataatatatacaa 1599

>emb|AL929351.1|PFA929351 Plasmodium falciparum strain 3D7, chromosome 5, segment 1/4
          Length = 347050

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 197    catatttataatatatacaa 216
              ||||||||||||||||||||
Sbjct: 140151 catatttataatatatacaa 140132

>emb|AL672217.6| Zebrafish DNA sequence from clone BUSM1-72B14 Contains the gdf8 gene
             for growth differentiation factor 8, a novel gene similar
             to PSML1 (postmeiotic segregation increased 1-like
             protein), two novel genes, the 3' part of a novel gene, a
             novel glycoprotease, a novel gene and two CpG islands,
             complete sequence
          Length = 117322

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   tacacatatacaacacctgt 194
             ||||||||||||||||||||
Sbjct: 83400 tacacatatacaacacctgt 83381

>emb|CR318584.8| Zebrafish DNA sequence from clone CH211-123F21 in linkage group 13,
              complete sequence
          Length = 138029

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 175    tacacatatacaacacctgt 194
              ||||||||||||||||||||
Sbjct: 119147 tacacatatacaacacctgt 119128

>emb|CR382380.5| Zebrafish DNA sequence from clone DKEY-112M3 in linkage group 14,
             complete sequence
          Length = 84200

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 95    ataattttcttctctatgat 114
             ||||||||||||||||||||
Sbjct: 30560 ataattttcttctctatgat 30579

>emb|BX890589.11| Zebrafish DNA sequence from clone DKEY-14I16 in linkage group 5,
             complete sequence
          Length = 204925

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 196   tcatatttataatatatacaacaa 219
             ||||||||| ||||||||||||||
Sbjct: 79563 tcatatttaaaatatatacaacaa 79540

>gb|AC012236.12| Homo sapiens chromosome 15, clone RP11-16E12, complete sequence
          Length = 173729

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 136   ttgtggagcatatatgcatatgta 159
             |||||||| |||||||||||||||
Sbjct: 56427 ttgtggagaatatatgcatatgta 56450

>emb|BX649596.8| Zebrafish DNA sequence from clone CH211-69P4 in linkage group 14,
             complete sequence
          Length = 181055

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 141   gagcatatatgcatatgtaa 160
             ||||||||||||||||||||
Sbjct: 42651 gagcatatatgcatatgtaa 42670

>gb|AC090695.14| Homo sapiens chromosome 15, clone RP11-192M23, complete sequence
          Length = 173632

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   caacacctgtgtcatattta 204
             ||||||||||||||||||||
Sbjct: 80136 caacacctgtgtcatattta 80155

>gb|AF238281.1| Arabidopsis thaliana trehalose-6-phosphate synthase 3 gene, promoter
            region
          Length = 1943

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 48   ttttgtgaacttcacttttg 67
            ||||||||||||||||||||
Sbjct: 1271 ttttgtgaacttcacttttg 1290

>emb|AL591593.11| Zebrafish DNA sequence from clone BUSM1-211O13, complete sequence
          Length = 121251

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 175  tacacatatacaacacctgt 194
            ||||||||||||||||||||
Sbjct: 6560 tacacatatacaacacctgt 6541

>dbj|AP002791.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-843F11, complete
              sequences
          Length = 172914

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 194    tgtcatatttataatatata 213
              ||||||||||||||||||||
Sbjct: 154732 tgtcatatttataatatata 154751

>emb|AL954341.14| Mouse DNA sequence from clone RP23-213D14 on chromosome 2, complete
             sequence
          Length = 178273

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 196   tcatatttataatatataca 215
             ||||||||||||||||||||
Sbjct: 38960 tcatatttataatatataca 38941

>gb|AC004473.1|T13D8 Arabidopsis thaliana chromosome 1 BAC T13D8, complete sequence
          Length = 116177

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    ttttgtgaacttcacttttg 67
             ||||||||||||||||||||
Sbjct: 20692 ttttgtgaacttcacttttg 20673


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,924,045
Number of Sequences: 3902068
Number of extensions: 2924045
Number of successful extensions: 69922
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69854
Number of HSP's gapped (non-prelim): 58
length of query: 254
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 232
effective length of database: 17,147,199,772
effective search space: 3978150347104
effective search space used: 3978150347104
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)