| Clone Name | basd13k23 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK101078.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024C12, full insert sequence Length = 2350 Score = 589 bits (297), Expect = e-165 Identities = 513/585 (87%) Strand = Plus / Plus Query: 1 ggttttaatgctgtattgacatctgagcactttgcatcatttctggtgtttataatcctt 60 ||||||||||| || |||| ||||||||||||||||||||||||||||| ||||||||| Sbjct: 396 ggttttaatgcagtgatgacgtctgagcactttgcatcatttctggtgttcataatcctt 455 Query: 61 catgtggttgcttttgtgtattacatcaaaggactgttgactcccagactgttcaaaatg 120 |||||||||||| ||||||||||||| |||||||| | |||||||| ||||||||| | Sbjct: 456 catgtggttgctcttgtgtattacataaaaggacttctaactcccaggctgttcaaagta 515 Query: 121 gccatgactcttgttataactgttggcttggctgtttgttttgcagtggtagctatactc 180 || ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| Sbjct: 516 gctatgactcttgtcataacagttggcttggctgtttgttttgcagtaatagctatactc 575 Query: 181 gtagcgttggtggcatctagcccaacaaaaggctggagcgggcgcagtttgagtctactg 240 | || ||||||||||||||||| |||||||| ||||| |||||||||||||||||||| Sbjct: 576 atcgctttggtggcatctagccccacaaaaggatggagtgggcgcagtttgagtctactt 635 Query: 241 gacccaacctatgctagcaagtatattcccatcattgccagtgtcagtgaacatcaaccc 300 || ||||||||||| |||||||| || || || ||||| |||||||| |||||||||||| Sbjct: 636 gatccaacctatgcaagcaagtacatccctattattgctagtgtcagcgaacatcaaccc 695 Query: 301 cctacctggccctcttattttatggacatcaatgttttggccttcttggttcctgctgga 360 |||||||||||||| ||||| ||||| ||||| || |||||||||||| |||||||||| Sbjct: 696 cctacctggccctcctatttcatggatatcaacgtgttggccttcttgattcctgctggg 755 Query: 361 ataatttcatgcttctcgcctttgtccgatgcaagttcattcatggtcttgtacttggtc 420 || ||||||||||||| |||||| || |||||||| || ||| ||||||||||||||||| Sbjct: 756 atcatttcatgcttcttgcctttatctgatgcaagctccttcgtggtcttgtacttggtc 815 Query: 421 actgcggtatatttttctggagtgatggttcggcttatgcttgtccttgctcctgctgcg 480 || || ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct: 816 accgcagtatatttttctggagtaatggtgcggcttatgcttgtccttgctcctgctgcg 875 Query: 481 tgcattctatctgggattgctctctcctcagccttcgatgtcctcacacgatctatgaaa 540 |||||| ||||||| || ||||| || || ||||| ||||||||| |||| | ||| Sbjct: 876 tgcattttatctggaatcgctctttctgaggctttcgacgtcctcacaagatccgttaaa 935 Query: 541 tttcagctctcaaaactatttgatgatggccctgctatttcaggg 585 | |||||| |||||| |||||||||| |||||||| ||||||| Sbjct: 936 tatcagctatcaaaattatttgatgacagccctgctgcttcaggg 980
>dbj|AK070919.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023065M17, full insert sequence Length = 1536 Score = 589 bits (297), Expect = e-165 Identities = 513/585 (87%) Strand = Plus / Plus Query: 1 ggttttaatgctgtattgacatctgagcactttgcatcatttctggtgtttataatcctt 60 ||||||||||| || |||| ||||||||||||||||||||||||||||| ||||||||| Sbjct: 858 ggttttaatgcagtgatgacgtctgagcactttgcatcatttctggtgttcataatcctt 917 Query: 61 catgtggttgcttttgtgtattacatcaaaggactgttgactcccagactgttcaaaatg 120 |||||||||||| ||||||||||||| |||||||| | |||||||| ||||||||| | Sbjct: 918 catgtggttgctcttgtgtattacataaaaggacttctaactcccaggctgttcaaagta 977 Query: 121 gccatgactcttgttataactgttggcttggctgtttgttttgcagtggtagctatactc 180 || ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| Sbjct: 978 gctatgactcttgtcataacagttggcttggctgtttgttttgcagtaatagctatactc 1037 Query: 181 gtagcgttggtggcatctagcccaacaaaaggctggagcgggcgcagtttgagtctactg 240 | || ||||||||||||||||| |||||||| ||||| |||||||||||||||||||| Sbjct: 1038 atcgctttggtggcatctagccccacaaaaggatggagtgggcgcagtttgagtctactt 1097 Query: 241 gacccaacctatgctagcaagtatattcccatcattgccagtgtcagtgaacatcaaccc 300 || ||||||||||| |||||||| || || || ||||| |||||||| |||||||||||| Sbjct: 1098 gatccaacctatgcaagcaagtacatccctattattgctagtgtcagcgaacatcaaccc 1157 Query: 301 cctacctggccctcttattttatggacatcaatgttttggccttcttggttcctgctgga 360 |||||||||||||| ||||| ||||| ||||| || |||||||||||| |||||||||| Sbjct: 1158 cctacctggccctcctatttcatggatatcaacgtgttggccttcttgattcctgctggg 1217 Query: 361 ataatttcatgcttctcgcctttgtccgatgcaagttcattcatggtcttgtacttggtc 420 || ||||||||||||| |||||| || |||||||| || ||| ||||||||||||||||| Sbjct: 1218 atcatttcatgcttcttgcctttatctgatgcaagctccttcgtggtcttgtacttggtc 1277 Query: 421 actgcggtatatttttctggagtgatggttcggcttatgcttgtccttgctcctgctgcg 480 || || ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct: 1278 accgcagtatatttttctggagtaatggtgcggcttatgcttgtccttgctcctgctgcg 1337 Query: 481 tgcattctatctgggattgctctctcctcagccttcgatgtcctcacacgatctatgaaa 540 |||||| ||||||| || ||||| || || ||||| ||||||||| |||| | ||| Sbjct: 1338 tgcattttatctggaatcgctctttctgaggctttcgacgtcctcacaagatccgttaaa 1397 Query: 541 tttcagctctcaaaactatttgatgatggccctgctatttcaggg 585 | |||||| |||||| |||||||||| |||||||| ||||||| Sbjct: 1398 tatcagctatcaaaattatttgatgacagccctgctgcttcaggg 1442
>dbj|AK067224.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099L06, full insert sequence Length = 2758 Score = 589 bits (297), Expect = e-165 Identities = 513/585 (87%) Strand = Plus / Plus Query: 1 ggttttaatgctgtattgacatctgagcactttgcatcatttctggtgtttataatcctt 60 ||||||||||| || |||| ||||||||||||||||||||||||||||| ||||||||| Sbjct: 858 ggttttaatgcagtgatgacgtctgagcactttgcatcatttctggtgttcataatcctt 917 Query: 61 catgtggttgcttttgtgtattacatcaaaggactgttgactcccagactgttcaaaatg 120 |||||||||||| ||||||||||||| |||||||| | |||||||| ||||||||| | Sbjct: 918 catgtggttgctcttgtgtattacataaaaggacttctaactcccaggctgttcaaagta 977 Query: 121 gccatgactcttgttataactgttggcttggctgtttgttttgcagtggtagctatactc 180 || ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| Sbjct: 978 gctatgactcttgtcataacagttggcttggctgtttgttttgcagtaatagctatactc 1037 Query: 181 gtagcgttggtggcatctagcccaacaaaaggctggagcgggcgcagtttgagtctactg 240 | || ||||||||||||||||| |||||||| ||||| |||||||||||||||||||| Sbjct: 1038 atcgctttggtggcatctagccccacaaaaggatggagtgggcgcagtttgagtctactt 1097 Query: 241 gacccaacctatgctagcaagtatattcccatcattgccagtgtcagtgaacatcaaccc 300 || ||||||||||| |||||||| || || || ||||| |||||||| |||||||||||| Sbjct: 1098 gatccaacctatgcaagcaagtacatccctattattgctagtgtcagcgaacatcaaccc 1157 Query: 301 cctacctggccctcttattttatggacatcaatgttttggccttcttggttcctgctgga 360 |||||||||||||| ||||| ||||| ||||| || |||||||||||| |||||||||| Sbjct: 1158 cctacctggccctcctatttcatggatatcaacgtgttggccttcttgattcctgctggg 1217 Query: 361 ataatttcatgcttctcgcctttgtccgatgcaagttcattcatggtcttgtacttggtc 420 || ||||||||||||| |||||| || |||||||| || ||| ||||||||||||||||| Sbjct: 1218 atcatttcatgcttcttgcctttatctgatgcaagctccttcgtggtcttgtacttggtc 1277 Query: 421 actgcggtatatttttctggagtgatggttcggcttatgcttgtccttgctcctgctgcg 480 || || ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct: 1278 accgcagtatatttttctggagtaatggtgcggcttatgcttgtccttgctcctgctgcg 1337 Query: 481 tgcattctatctgggattgctctctcctcagccttcgatgtcctcacacgatctatgaaa 540 |||||| ||||||| || ||||| || || ||||| ||||||||| |||| | ||| Sbjct: 1338 tgcattttatctggaatcgctctttctgaggctttcgacgtcctcacaagatccgttaaa 1397 Query: 541 tttcagctctcaaaactatttgatgatggccctgctatttcaggg 585 | |||||| |||||| |||||||||| |||||||| ||||||| Sbjct: 1398 tatcagctatcaaaattatttgatgacagccctgctgcttcaggg 1442
>ref|NM_121974.2| Arabidopsis thaliana STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A); oligosaccharyl transferase AT5G19690 (STT3A) mRNA, complete cds Length = 2666 Score = 153 bits (77), Expect = 8e-34 Identities = 230/281 (81%) Strand = Plus / Plus Query: 226 agtttgagtctactggacccaacctatgctagcaagtatattcccatcattgccagtgtc 285 ||||| ||| |||| || ||||| ||||| |||||||||||||| || ||||| |||||| Sbjct: 1145 agtttaagtttacttgatccaacttatgcaagcaagtatattccaattattgcaagtgtc 1204 Query: 286 agtgaacatcaaccccctacctggccctcttattttatggacatcaatgttttggccttc 345 |||||||||||||| || || ||||| |||||||| ||||| |||||||||||||| ||| Sbjct: 1205 agtgaacatcaacctccaacttggccatcttatttcatggatatcaatgttttggctttc 1264 Query: 346 ttggttcctgctggaataatttcatgcttctcgcctttgtccgatgcaagttcattcatg 405 ||||| |||||||| || ||| | ||||| |||||| | || ||||| || || || || Sbjct: 1265 ttggtccctgctggcatcattgcgtgcttttcgcctctatctgatgccagctcttttgtg 1324 Query: 406 gtcttgtacttggtcactgcggtatatttttctggagtgatggttcggcttatgcttgtc 465 ||| | ||| | || | | ||||| ||||||||||| |||||||| |||||||| || Sbjct: 1325 gtcctttacattgtaatgtctgtatacttttctggagttatggttcgtcttatgctcgtg 1384 Query: 466 cttgctcctgctgcgtgcattctatctgggattgctctctc 506 |||||||| || || ||||| | ||||||||||| ||||| Sbjct: 1385 cttgctccagcagcatgcatcatgtctgggattgcgctctc 1425
>gb|AY056191.1| Arabidopsis thaliana putative oligosaccharyl transferase STT3 (At5g19690) mRNA, complete cds Length = 2679 Score = 153 bits (77), Expect = 8e-34 Identities = 230/281 (81%) Strand = Plus / Plus Query: 226 agtttgagtctactggacccaacctatgctagcaagtatattcccatcattgccagtgtc 285 ||||| ||| |||| || ||||| ||||| |||||||||||||| || ||||| |||||| Sbjct: 1143 agtttaagtttacttgatccaacttatgcaagcaagtatattccaattattgcaagtgtc 1202 Query: 286 agtgaacatcaaccccctacctggccctcttattttatggacatcaatgttttggccttc 345 |||||||||||||| || || ||||| |||||||| ||||| |||||||||||||| ||| Sbjct: 1203 agtgaacatcaacctccaacttggccatcttatttcatggatatcaatgttttggctttc 1262 Query: 346 ttggttcctgctggaataatttcatgcttctcgcctttgtccgatgcaagttcattcatg 405 ||||| |||||||| || ||| | ||||| |||||| | || ||||| || || || || Sbjct: 1263 ttggtccctgctggcatcattgcgtgcttttcgcctctatctgatgccagctcttttgtg 1322 Query: 406 gtcttgtacttggtcactgcggtatatttttctggagtgatggttcggcttatgcttgtc 465 ||| | ||| | || | | ||||| ||||||||||| |||||||| |||||||| || Sbjct: 1323 gtcctttacattgtaatgtctgtatacttttctggagttatggttcgtcttatgctcgtg 1382 Query: 466 cttgctcctgctgcgtgcattctatctgggattgctctctc 506 |||||||| || || ||||| | ||||||||||| ||||| Sbjct: 1383 cttgctccagcagcatgcatcatgtctgggattgcgctctc 1423
>gb|AY059649.1| Arabidopsis thaliana AT5g19690/T29J13_110 mRNA, complete cds Length = 2340 Score = 153 bits (77), Expect = 8e-34 Identities = 230/281 (81%) Strand = Plus / Plus Query: 226 agtttgagtctactggacccaacctatgctagcaagtatattcccatcattgccagtgtc 285 ||||| ||| |||| || ||||| ||||| |||||||||||||| || ||||| |||||| Sbjct: 1012 agtttaagtttacttgatccaacttatgcaagcaagtatattccaattattgcaagtgtc 1071 Query: 286 agtgaacatcaaccccctacctggccctcttattttatggacatcaatgttttggccttc 345 |||||||||||||| || || ||||| |||||||| ||||| |||||||||||||| ||| Sbjct: 1072 agtgaacatcaacctccaacttggccatcttatttcatggatatcaatgttttggctttc 1131 Query: 346 ttggttcctgctggaataatttcatgcttctcgcctttgtccgatgcaagttcattcatg 405 ||||| |||||||| || ||| | ||||| |||||| | || ||||| || || || || Sbjct: 1132 ttggtccctgctggcatcattgcgtgcttttcgcctctatctgatgccagctcttttgtg 1191 Query: 406 gtcttgtacttggtcactgcggtatatttttctggagtgatggttcggcttatgcttgtc 465 ||| | ||| | || | | ||||| ||||||||||| |||||||| |||||||| || Sbjct: 1192 gtcctttacattgtaatgtctgtatacttttctggagttatggttcgtcttatgctcgtg 1251 Query: 466 cttgctcctgctgcgtgcattctatctgggattgctctctc 506 |||||||| || || ||||| | ||||||||||| ||||| Sbjct: 1252 cttgctccagcagcatgcatcatgtctgggattgcgctctc 1292
>gb|AY050397.1| Arabidopsis thaliana AT5g19690/T29J13_110 mRNA, complete cds Length = 2645 Score = 153 bits (77), Expect = 8e-34 Identities = 230/281 (81%) Strand = Plus / Plus Query: 226 agtttgagtctactggacccaacctatgctagcaagtatattcccatcattgccagtgtc 285 ||||| ||| |||| || ||||| ||||| |||||||||||||| || ||||| |||||| Sbjct: 1145 agtttaagtttacttgatccaacttatgcaagcaagtatattccaattattgcaagtgtc 1204 Query: 286 agtgaacatcaaccccctacctggccctcttattttatggacatcaatgttttggccttc 345 |||||||||||||| || || ||||| |||||||| ||||| |||||||||||||| ||| Sbjct: 1205 agtgaacatcaacctccaacttggccatcttatttcatggatatcaatgttttggctttc 1264 Query: 346 ttggttcctgctggaataatttcatgcttctcgcctttgtccgatgcaagttcattcatg 405 ||||| |||||||| || ||| | ||||| |||||| | || ||||| || || || || Sbjct: 1265 ttggtccctgctggcatcattgcgtgcttttcgcctctatctgatgccagctcttttgtg 1324 Query: 406 gtcttgtacttggtcactgcggtatatttttctggagtgatggttcggcttatgcttgtc 465 ||| | ||| | || | | ||||| ||||||||||| |||||||| |||||||| || Sbjct: 1325 gtcctttacattgtaatgtctgtatacttttctggagttatggttcgtcttatgctcgtg 1384 Query: 466 cttgctcctgctgcgtgcattctatctgggattgctctctc 506 |||||||| || || ||||| | ||||||||||| ||||| Sbjct: 1385 cttgctccagcagcatgcatcatgtctgggattgcgctctc 1425
>gb|AC132491.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0599F04, complete sequence Length = 169073 Score = 123 bits (62), Expect = 7e-25 Identities = 101/114 (88%) Strand = Plus / Minus Query: 246 aacctatgctagcaagtatattcccatcattgccagtgtcagtgaacatcaaccccctac 305 ||||||||| |||||||| || || || ||||| |||||||| ||||||||||||||||| Sbjct: 129895 aacctatgcaagcaagtacatccctattattgctagtgtcagcgaacatcaaccccctac 129836 Query: 306 ctggccctcttattttatggacatcaatgttttggccttcttggttcctgctgg 359 ||||||||| ||||| ||||| ||||| || |||||||||||| |||||||||| Sbjct: 129835 ctggccctcctatttcatggatatcaacgtgttggccttcttgattcctgctgg 129782 Score = 115 bits (58), Expect = 2e-22 Identities = 94/106 (88%) Strand = Plus / Minus Query: 45 ggtgtttataatccttcatgtggttgcttttgtgtattacatcaaaggactgttgactcc 104 |||||| ||||||||||||||||||||| ||||||||||||| |||||||| | ||||| Sbjct: 130706 ggtgttcataatccttcatgtggttgctcttgtgtattacataaaaggacttctaactcc 130647 Query: 105 cagactgttcaaaatggccatgactcttgttataactgttggcttg 150 ||| ||||||||| | || ||||||||||| ||||| ||||||||| Sbjct: 130646 caggctgttcaaagtagctatgactcttgtcataacagttggcttg 130601 Score = 115 bits (58), Expect = 2e-22 Identities = 82/90 (91%) Strand = Plus / Minus Query: 150 ggctgtttgttttgcagtggtagctatactcgtagcgttggtggcatctagcccaacaaa 209 |||||||||||||||||| ||||||||||| | || ||||||||||||||||| ||||| Sbjct: 130432 ggctgtttgttttgcagtaatagctatactcatcgctttggtggcatctagccccacaaa 130373 Query: 210 aggctggagcgggcgcagtttgagtctact 239 ||| ||||| |||||||||||||||||||| Sbjct: 130372 aggatggagtgggcgcagtttgagtctact 130343 Score = 99.6 bits (50), Expect = 1e-17 Identities = 107/126 (84%) Strand = Plus / Minus Query: 451 cggcttatgcttgtccttgctcctgctgcgtgcattctatctgggattgctctctcctca 510 |||||||||||||||||||||||||||||||||||| ||||||| || ||||| || Sbjct: 129520 cggcttatgcttgtccttgctcctgctgcgtgcattttatctggaatcgctctttctgag 129461 Query: 511 gccttcgatgtcctcacacgatctatgaaatttcagctctcaaaactatttgatgatggc 570 || ||||| ||||||||| |||| | |||| |||||| |||||| |||||||||| || Sbjct: 129460 gctttcgacgtcctcacaagatccgttaaatatcagctatcaaaattatttgatgacagc 129401 Query: 571 cctgct 576 |||||| Sbjct: 129400 cctgct 129395 Score = 93.7 bits (47), Expect = 6e-16 Identities = 74/83 (89%) Strand = Plus / Minus Query: 367 tcatgcttctcgcctttgtccgatgcaagttcattcatggtcttgtacttggtcactgcg 426 |||||||||| |||||| || |||||||| || ||| ||||||||||||||||||| || Sbjct: 129694 tcatgcttcttgcctttatctgatgcaagctccttcgtggtcttgtacttggtcaccgca 129635 Query: 427 gtatatttttctggagtgatggt 449 ||||||||||||||||| ||||| Sbjct: 129634 gtatatttttctggagtaatggt 129612 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 1 ggttttaatgctgtattgacatctgagcactttgcatcatttctggt 47 ||||||||||| || |||| |||||||||||||||||||||||||| Sbjct: 130932 ggttttaatgcagtgatgacgtctgagcactttgcatcatttctggt 130886
>gb|AC130611.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0483D07, complete sequence Length = 147122 Score = 123 bits (62), Expect = 7e-25 Identities = 101/114 (88%) Strand = Plus / Minus Query: 246 aacctatgctagcaagtatattcccatcattgccagtgtcagtgaacatcaaccccctac 305 ||||||||| |||||||| || || || ||||| |||||||| ||||||||||||||||| Sbjct: 25857 aacctatgcaagcaagtacatccctattattgctagtgtcagcgaacatcaaccccctac 25798 Query: 306 ctggccctcttattttatggacatcaatgttttggccttcttggttcctgctgg 359 ||||||||| ||||| ||||| ||||| || |||||||||||| |||||||||| Sbjct: 25797 ctggccctcctatttcatggatatcaacgtgttggccttcttgattcctgctgg 25744 Score = 115 bits (58), Expect = 2e-22 Identities = 94/106 (88%) Strand = Plus / Minus Query: 45 ggtgtttataatccttcatgtggttgcttttgtgtattacatcaaaggactgttgactcc 104 |||||| ||||||||||||||||||||| ||||||||||||| |||||||| | ||||| Sbjct: 26668 ggtgttcataatccttcatgtggttgctcttgtgtattacataaaaggacttctaactcc 26609 Query: 105 cagactgttcaaaatggccatgactcttgttataactgttggcttg 150 ||| ||||||||| | || ||||||||||| ||||| ||||||||| Sbjct: 26608 caggctgttcaaagtagctatgactcttgtcataacagttggcttg 26563 Score = 115 bits (58), Expect = 2e-22 Identities = 82/90 (91%) Strand = Plus / Minus Query: 150 ggctgtttgttttgcagtggtagctatactcgtagcgttggtggcatctagcccaacaaa 209 |||||||||||||||||| ||||||||||| | || ||||||||||||||||| ||||| Sbjct: 26394 ggctgtttgttttgcagtaatagctatactcatcgctttggtggcatctagccccacaaa 26335 Query: 210 aggctggagcgggcgcagtttgagtctact 239 ||| ||||| |||||||||||||||||||| Sbjct: 26334 aggatggagtgggcgcagtttgagtctact 26305 Score = 99.6 bits (50), Expect = 1e-17 Identities = 107/126 (84%) Strand = Plus / Minus Query: 451 cggcttatgcttgtccttgctcctgctgcgtgcattctatctgggattgctctctcctca 510 |||||||||||||||||||||||||||||||||||| ||||||| || ||||| || Sbjct: 25482 cggcttatgcttgtccttgctcctgctgcgtgcattttatctggaatcgctctttctgag 25423 Query: 511 gccttcgatgtcctcacacgatctatgaaatttcagctctcaaaactatttgatgatggc 570 || ||||| ||||||||| |||| | |||| |||||| |||||| |||||||||| || Sbjct: 25422 gctttcgacgtcctcacaagatccgttaaatatcagctatcaaaattatttgatgacagc 25363 Query: 571 cctgct 576 |||||| Sbjct: 25362 cctgct 25357 Score = 93.7 bits (47), Expect = 6e-16 Identities = 74/83 (89%) Strand = Plus / Minus Query: 367 tcatgcttctcgcctttgtccgatgcaagttcattcatggtcttgtacttggtcactgcg 426 |||||||||| |||||| || |||||||| || ||| ||||||||||||||||||| || Sbjct: 25656 tcatgcttcttgcctttatctgatgcaagctccttcgtggtcttgtacttggtcaccgca 25597 Query: 427 gtatatttttctggagtgatggt 449 ||||||||||||||||| ||||| Sbjct: 25596 gtatatttttctggagtaatggt 25574 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 1 ggttttaatgctgtattgacatctgagcactttgcatcatttctggt 47 ||||||||||| || |||| |||||||||||||||||||||||||| Sbjct: 26894 ggttttaatgcagtgatgacgtctgagcactttgcatcatttctggt 26848
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 123 bits (62), Expect = 7e-25 Identities = 101/114 (88%) Strand = Plus / Minus Query: 246 aacctatgctagcaagtatattcccatcattgccagtgtcagtgaacatcaaccccctac 305 ||||||||| |||||||| || || || ||||| |||||||| ||||||||||||||||| Sbjct: 25613488 aacctatgcaagcaagtacatccctattattgctagtgtcagcgaacatcaaccccctac 25613429 Query: 306 ctggccctcttattttatggacatcaatgttttggccttcttggttcctgctgg 359 ||||||||| ||||| ||||| ||||| || |||||||||||| |||||||||| Sbjct: 25613428 ctggccctcctatttcatggatatcaacgtgttggccttcttgattcctgctgg 25613375 Score = 115 bits (58), Expect = 2e-22 Identities = 94/106 (88%) Strand = Plus / Minus Query: 45 ggtgtttataatccttcatgtggttgcttttgtgtattacatcaaaggactgttgactcc 104 |||||| ||||||||||||||||||||| ||||||||||||| |||||||| | ||||| Sbjct: 25614299 ggtgttcataatccttcatgtggttgctcttgtgtattacataaaaggacttctaactcc 25614240 Query: 105 cagactgttcaaaatggccatgactcttgttataactgttggcttg 150 ||| ||||||||| | || ||||||||||| ||||| ||||||||| Sbjct: 25614239 caggctgttcaaagtagctatgactcttgtcataacagttggcttg 25614194 Score = 115 bits (58), Expect = 2e-22 Identities = 82/90 (91%) Strand = Plus / Minus Query: 150 ggctgtttgttttgcagtggtagctatactcgtagcgttggtggcatctagcccaacaaa 209 |||||||||||||||||| ||||||||||| | || ||||||||||||||||| ||||| Sbjct: 25614025 ggctgtttgttttgcagtaatagctatactcatcgctttggtggcatctagccccacaaa 25613966 Query: 210 aggctggagcgggcgcagtttgagtctact 239 ||| ||||| |||||||||||||||||||| Sbjct: 25613965 aggatggagtgggcgcagtttgagtctact 25613936 Score = 99.6 bits (50), Expect = 1e-17 Identities = 107/126 (84%) Strand = Plus / Minus Query: 451 cggcttatgcttgtccttgctcctgctgcgtgcattctatctgggattgctctctcctca 510 |||||||||||||||||||||||||||||||||||| ||||||| || ||||| || Sbjct: 25613113 cggcttatgcttgtccttgctcctgctgcgtgcattttatctggaatcgctctttctgag 25613054 Query: 511 gccttcgatgtcctcacacgatctatgaaatttcagctctcaaaactatttgatgatggc 570 || ||||| ||||||||| |||| | |||| |||||| |||||| |||||||||| || Sbjct: 25613053 gctttcgacgtcctcacaagatccgttaaatatcagctatcaaaattatttgatgacagc 25612994 Query: 571 cctgct 576 |||||| Sbjct: 25612993 cctgct 25612988 Score = 93.7 bits (47), Expect = 6e-16 Identities = 74/83 (89%) Strand = Plus / Minus Query: 367 tcatgcttctcgcctttgtccgatgcaagttcattcatggtcttgtacttggtcactgcg 426 |||||||||| |||||| || |||||||| || ||| ||||||||||||||||||| || Sbjct: 25613287 tcatgcttcttgcctttatctgatgcaagctccttcgtggtcttgtacttggtcaccgca 25613228 Query: 427 gtatatttttctggagtgatggt 449 ||||||||||||||||| ||||| Sbjct: 25613227 gtatatttttctggagtaatggt 25613205 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 1 ggttttaatgctgtattgacatctgagcactttgcatcatttctggt 47 ||||||||||| || |||| |||||||||||||||||||||||||| Sbjct: 25614525 ggttttaatgcagtgatgacgtctgagcactttgcatcatttctggt 25614479
>gb|AF296838.1|T29J13 Arabidopsis thaliana BAC T29J13 Length = 100592 Score = 123 bits (62), Expect = 7e-25 Identities = 98/110 (89%) Strand = Plus / Plus Query: 250 tatgctagcaagtatattcccatcattgccagtgtcagtgaacatcaaccccctacctgg 309 ||||| |||||||||||||| || ||||| |||||||||||||||||||| || || ||| Sbjct: 44976 tatgcaagcaagtatattccaattattgcaagtgtcagtgaacatcaacctccaacttgg 45035 Query: 310 ccctcttattttatggacatcaatgttttggccttcttggttcctgctgg 359 || |||||||| ||||| |||||||||||||| |||||||| |||||||| Sbjct: 45036 ccatcttatttcatggatatcaatgttttggctttcttggtccctgctgg 45085 Score = 40.1 bits (20), Expect = 8.1 Identities = 50/60 (83%) Strand = Plus / Plus Query: 447 ggttcggcttatgcttgtccttgctcctgctgcgtgcattctatctgggattgctctctc 506 |||||| |||||||| || |||||||| || || ||||| | ||||||||||| ||||| Sbjct: 45374 ggttcgtcttatgctcgtgcttgctccagcagcatgcatcatgtctgggattgcgctctc 45433
>gb|AC151824.12| Medicago truncatula clone mth2-45n18, complete sequence Length = 99140 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 4 tttaatgctgtattgacatctgagcactttgcatcatttctggtg 48 |||||||||||| |||| || |||||||||||||||||||||||| Sbjct: 10578 tttaatgctgtaatgacgtccgagcactttgcatcatttctggtg 10622 Score = 42.1 bits (21), Expect = 2.0 Identities = 48/57 (84%) Strand = Plus / Plus Query: 447 ggttcggcttatgcttgtccttgctcctgctgcgtgcattctatctgggattgctct 503 |||||| || |||||||| |||||||| || || ||||| | |||||||||||||| Sbjct: 12274 ggttcgcctgatgcttgtacttgctccagcggcttgcatcttgtctgggattgctct 12330
>gb|AC157490.18| Medicago truncatula clone mth2-123f23, complete sequence Length = 106571 Score = 65.9 bits (33), Expect = 1e-07 Identities = 42/45 (93%) Strand = Plus / Plus Query: 4 tttaatgctgtattgacatctgagcactttgcatcatttctggtg 48 |||||||||||| |||| || |||||||||||||||||||||||| Sbjct: 67696 tttaatgctgtaatgacgtccgagcactttgcatcatttctggtg 67740 Score = 42.1 bits (21), Expect = 2.0 Identities = 48/57 (84%) Strand = Plus / Plus Query: 447 ggttcggcttatgcttgtccttgctcctgctgcgtgcattctatctgggattgctct 503 |||||| || |||||||| |||||||| || || ||||| | |||||||||||||| Sbjct: 69392 ggttcgcctgatgcttgtacttgctccagcggcttgcatcttgtctgggattgctct 69448
>gb|AC005284.1|AC005284 Homo sapiens chromosome 17, clone hRPK.795_F_17, complete sequence Length = 192802 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Plus Query: 54 aatccttcatgtggttgcttttgt 77 |||||||||||||||||||||||| Sbjct: 61222 aatccttcatgtggttgcttttgt 61245
>gb|AC090529.2| Rattus norvegicus strain Brown Norway clone RP31-160L19, complete sequence Length = 165686 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 481 tgcattctatctgggattgctctctcctc 509 |||||||| ||||||||||||||||||| Sbjct: 119132 tgcattctgactgggattgctctctcctc 119104
>emb|CR626861.1| Mouse DNA sequence from clone RP23-31D7 on chromosome 2, complete sequence Length = 25524 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 315 ttattttatggacatcaatgttttg 339 |||||||||| |||||||||||||| Sbjct: 24322 ttattttatgtacatcaatgttttg 24346
>emb|X61786.1|RNSCC3 Rat synaptonemal complex SCC3 DNA Length = 284 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 277 gccagtgtcagtgaacatcaa 297 ||||||||||||||||||||| Sbjct: 179 gccagtgtcagtgaacatcaa 199
>emb|AL935060.17| Mouse DNA sequence from clone RP24-151H6 on chromosome 2, complete sequence Length = 212007 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 315 ttattttatggacatcaatgttttg 339 |||||||||| |||||||||||||| Sbjct: 798 ttattttatgtacatcaatgttttg 822
>gb|AC005356.1| Homo sapiens chromosome 16, cosmid clone RT81 (LANL), complete sequence Length = 38826 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 490 tctgggattgctctctcctc 509 |||||||||||||||||||| Sbjct: 2012 tctgggattgctctctcctc 2031
>gb|AC005211.1| Homo sapiens chromosome 16, cosmid clone 307A2 (LANL), complete sequence Length = 35347 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 490 tctgggattgctctctcctc 509 |||||||||||||||||||| Sbjct: 17894 tctgggattgctctctcctc 17913
>gb|AC009171.6| Homo sapiens chromosome 16 clone RP11-95P2, complete sequence Length = 175022 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 490 tctgggattgctctctcctc 509 |||||||||||||||||||| Sbjct: 169240 tctgggattgctctctcctc 169259
>gb|AC101969.6| Mus musculus chromosome 17, clone RP24-259G8, complete sequence Length = 219711 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 347 tggttcctgctggaataatttcat 370 |||||||||| ||||||||||||| Sbjct: 79158 tggttcctgcaggaataatttcat 79181
>gb|AC146560.21| Medicago truncatula clone mth2-12g6, complete sequence Length = 127820 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 538 aaatttcagctctcaaaact 557 |||||||||||||||||||| Sbjct: 47045 aaatttcagctctcaaaact 47064
>emb|AL162578.13| Human DNA sequence from clone RP11-2J18 on chromosome 6 Contains the 5' end of a ribosomal protein S15a (RPS15A) and part of the gene for BRG1-binding protein ELD/OSA1 (p250R KIAA1235) (FLJ00253, FLJ22292), complete sequence Length = 182823 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 tggtggcatctagcccaaca 207 |||||||||||||||||||| Sbjct: 148489 tggtggcatctagcccaaca 148470
>gb|AC145332.48| Felis catus clone rp86-207p24, complete sequence Length = 165072 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 488 tatctgggattgctctctcc 507 |||||||||||||||||||| Sbjct: 61207 tatctgggattgctctctcc 61226
>gb|AC117384.5| Homo sapiens 3 BAC RP11-114I16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 164598 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 tatttttctggagtgatggt 449 |||||||||||||||||||| Sbjct: 154319 tatttttctggagtgatggt 154338
>ref|XM_626951.1| Cryptosporidium parvum Iowa II putative sugar transporter with 12 transmembrane domains (cgd3_4070), partial mRNA Length = 1467 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 actcttgttataactgttgg 146 |||||||||||||||||||| Sbjct: 862 actcttgttataactgttgg 881
>emb|BX470178.13| Zebrafish DNA sequence from clone CH211-285K18, complete sequence Length = 166954 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 tatggacatcaatgttttgg 340 |||||||||||||||||||| Sbjct: 65097 tatggacatcaatgttttgg 65078
>gb|AC110766.5| Homo sapiens BAC clone RP11-93M12 from 4, complete sequence Length = 169442 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 tgtttgttttgcagtggtag 172 |||||||||||||||||||| Sbjct: 79120 tgtttgttttgcagtggtag 79139
>gb|AC122474.5| Mus musculus chromosome 1 clone RP24-331M14, complete sequence Length = 176800 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 527 cacgatctatgaaatttcagctct 550 |||||||||||||||| ||||||| Sbjct: 17315 cacgatctatgaaattccagctct 17338
>gb|AE016830.1| Enterococcus faecalis V583, complete genome Length = 3218031 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 ctagcccaacaaaaggctgg 216 |||||||||||||||||||| Sbjct: 2894325 ctagcccaacaaaaggctgg 2894306
>gb|AC131697.4| Mus musculus BAC clone RP23-407K12 from 1, complete sequence Length = 199589 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 527 cacgatctatgaaatttcagctct 550 |||||||||||||||| ||||||| Sbjct: 132155 cacgatctatgaaattccagctct 132178
>gb|AC132475.4| Mus musculus BAC clone RP23-114P16 from 3, complete sequence Length = 215899 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 tattgacatctgagcacttt 33 |||||||||||||||||||| Sbjct: 43448 tattgacatctgagcacttt 43467
>emb|CT027993.6| Mouse DNA sequence from clone RP24-82E21 on chromosome 17, complete sequence Length = 241014 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 347 tggttcctgctggaataatttcat 370 |||||||||| ||||||||||||| Sbjct: 179093 tggttcctgcaggaataatttcat 179116
>dbj|AP007295.1| Lotus japonicus genomic DNA, clone:LjT33A04, TM0130, complete sequence Length = 122684 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 535 atgaaatttcagctctcaaa 554 |||||||||||||||||||| Sbjct: 49633 atgaaatttcagctctcaaa 49652
>gb|AC171209.1| Mus musculus BAC clone RP23-105E1 from chromosome 17, complete sequence Length = 212184 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 347 tggttcctgctggaataatttcat 370 |||||||||| ||||||||||||| Sbjct: 116612 tggttcctgcaggaataatttcat 116635 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,905,202 Number of Sequences: 3902068 Number of extensions: 5905202 Number of successful extensions: 105456 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 105327 Number of HSP's gapped (non-prelim): 129 length of query: 593 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 570 effective length of database: 17,143,297,704 effective search space: 9771679691280 effective search space used: 9771679691280 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)