ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd13j18 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY106306.1| Zea mays PCO069419 mRNA sequence Length = 889 Score = 280 bits (141), Expect = 2e-72 Identities = 207/228 (90%), Gaps = 1/228 (0%) Strand = Plus / Plus Query: 76 ccgagtgcaacgacgtggagtgcgccccgnagaaggagatcgggagcctgagcgtggagt 135 |||| |||||||| | ||||||||||||| |||||||| ||||||||||||||| |||| Sbjct: 297 ccgactgcaacgaggaggagtgcgccccggagaaggaggtcgggagcctgagcgccgagt 356 Query: 136 ggctggcggaggagaggaccaaggtcgtgggaactttccctcccaagaagaaaggatgga 195 ||||||| |||||||||||| ||||||| || ||||||||||||||||||||||| |||| Sbjct: 357 ggctggccgaggagaggacccaggtcgtcggcactttccctcccaagaagaaagggtgga 416 Query: 196 ccggcctagtcgagaaggacaccgccggccagaccaacatctactccatcgagccggcgg 255 ||||| |||| |||||||||||||||||||||||||||||||||||| |||||||| || Sbjct: 417 ccggcttagtggagaaggacaccgccggccagaccaacatctactccgtcgagccgatgg 476 Query: 256 tgtacgtggcggagagcgccatcagtctccggcacggcggggacgtcg 303 |||||||||| ||||| |||||||| ||||||||||||||| |||||| Sbjct: 477 tgtacgtggccgagagtgccatcag-ctccggcacggcgggtacgtcg 523
>ref|XM_466213.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1052 Score = 248 bits (125), Expect = 9e-63 Identities = 181/200 (90%) Strand = Plus / Plus Query: 81 tgcaacgacgtggagtgcgccccgnagaaggagatcgggagcctgagcgtggagtggctg 140 |||||||| | ||||||||| ||| |||||||| | ||||||||||||| |||||||||| Sbjct: 348 tgcaacgaggaggagtgcgcgccggagaaggaggtggggagcctgagcgcggagtggctg 407 Query: 141 gcggaggagaggaccaaggtcgtgggaactttccctcccaagaagaaaggatggaccggc 200 ||||||||| |||||||||| || || || ||||||||||||||||| |||||||||||| Sbjct: 408 gcggaggagcggaccaaggtggtcggcaccttccctcccaagaagaagggatggaccggc 467 Query: 201 ctagtcgagaaggacaccgccggccagaccaacatctactccatcgagccggcggtgtac 260 ||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||| Sbjct: 468 tacgtcgagaaggacaccgccggccaaaccaacatctactccgtcgagccgacggtgtac 527 Query: 261 gtggcggagagcgccatcag 280 |||||||||||||||||||| Sbjct: 528 gtggcggagagcgccatcag 547
>ref|XM_506826.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1008_F08.20 mRNA Length = 1060 Score = 248 bits (125), Expect = 9e-63 Identities = 181/200 (90%) Strand = Plus / Plus Query: 81 tgcaacgacgtggagtgcgccccgnagaaggagatcgggagcctgagcgtggagtggctg 140 |||||||| | ||||||||| ||| |||||||| | ||||||||||||| |||||||||| Sbjct: 353 tgcaacgaggaggagtgcgcgccggagaaggaggtggggagcctgagcgcggagtggctg 412 Query: 141 gcggaggagaggaccaaggtcgtgggaactttccctcccaagaagaaaggatggaccggc 200 ||||||||| |||||||||| || || || ||||||||||||||||| |||||||||||| Sbjct: 413 gcggaggagcggaccaaggtggtcggcaccttccctcccaagaagaagggatggaccggc 472 Query: 201 ctagtcgagaaggacaccgccggccagaccaacatctactccatcgagccggcggtgtac 260 ||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||| Sbjct: 473 tacgtcgagaaggacaccgccggccaaaccaacatctactccgtcgagccgacggtgtac 532 Query: 261 gtggcggagagcgccatcag 280 |||||||||||||||||||| Sbjct: 533 gtggcggagagcgccatcag 552
>dbj|AK100187.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023033O22, full insert sequence Length = 1060 Score = 248 bits (125), Expect = 9e-63 Identities = 181/200 (90%) Strand = Plus / Plus Query: 81 tgcaacgacgtggagtgcgccccgnagaaggagatcgggagcctgagcgtggagtggctg 140 |||||||| | ||||||||| ||| |||||||| | ||||||||||||| |||||||||| Sbjct: 353 tgcaacgaggaggagtgcgcgccggagaaggaggtggggagcctgagcgcggagtggctg 412 Query: 141 gcggaggagaggaccaaggtcgtgggaactttccctcccaagaagaaaggatggaccggc 200 ||||||||| |||||||||| || || || ||||||||||||||||| |||||||||||| Sbjct: 413 gcggaggagcggaccaaggtggtcggcaccttccctcccaagaagaagggatggaccggc 472 Query: 201 ctagtcgagaaggacaccgccggccagaccaacatctactccatcgagccggcggtgtac 260 ||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||| Sbjct: 473 tacgtcgagaaggacaccgccggccaaaccaacatctactccgtcgagccgacggtgtac 532 Query: 261 gtggcggagagcgccatcag 280 |||||||||||||||||||| Sbjct: 533 gtggcggagagcgccatcag 552
>dbj|AK060580.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-G04, full insert sequence Length = 1052 Score = 248 bits (125), Expect = 9e-63 Identities = 181/200 (90%) Strand = Plus / Plus Query: 81 tgcaacgacgtggagtgcgccccgnagaaggagatcgggagcctgagcgtggagtggctg 140 |||||||| | ||||||||| ||| |||||||| | ||||||||||||| |||||||||| Sbjct: 348 tgcaacgaggaggagtgcgcgccggagaaggaggtggggagcctgagcgcggagtggctg 407 Query: 141 gcggaggagaggaccaaggtcgtgggaactttccctcccaagaagaaaggatggaccggc 200 ||||||||| |||||||||| || || || ||||||||||||||||| |||||||||||| Sbjct: 408 gcggaggagcggaccaaggtggtcggcaccttccctcccaagaagaagggatggaccggc 467 Query: 201 ctagtcgagaaggacaccgccggccagaccaacatctactccatcgagccggcggtgtac 260 ||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||| Sbjct: 468 tacgtcgagaaggacaccgccggccaaaccaacatctactccgtcgagccgacggtgtac 527 Query: 261 gtggcggagagcgccatcag 280 |||||||||||||||||||| Sbjct: 528 gtggcggagagcgccatcag 547
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 192 bits (97), Expect = 4e-46 Identities = 150/168 (89%) Strand = Plus / Minus Query: 81 tgcaacgacgtggagtgcgccccgnagaaggagatcgggagcctgagcgtggagtggctg 140 |||||||| | ||||||||| ||| |||||||| | ||||||||||||| |||||||||| Sbjct: 21080598 tgcaacgaggaggagtgcgcgccggagaaggaggtggggagcctgagcgcggagtggctg 21080539 Query: 141 gcggaggagaggaccaaggtcgtgggaactttccctcccaagaagaaaggatggaccggc 200 ||||||||| |||||||||| || || || ||||||||||||||||| |||||||||||| Sbjct: 21080538 gcggaggagcggaccaaggtggtcggcaccttccctcccaagaagaagggatggaccggc 21080479 Query: 201 ctagtcgagaaggacaccgccggccagaccaacatctactccatcgag 248 ||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct: 21080478 tacgtcgagaaggacaccgccggccaaaccaacatctactccgtcgag 21080431 Score = 60.0 bits (30), Expect = 4e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 247 agccggcggtgtacgtggcggagagcgccatcag 280 ||||| |||||||||||||||||||||||||||| Sbjct: 21080017 agccgacggtgtacgtggcggagagcgccatcag 21079984
>dbj|AP004017.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1008_F08 Length = 105979 Score = 192 bits (97), Expect = 4e-46 Identities = 150/168 (89%) Strand = Plus / Minus Query: 81 tgcaacgacgtggagtgcgccccgnagaaggagatcgggagcctgagcgtggagtggctg 140 |||||||| | ||||||||| ||| |||||||| | ||||||||||||| |||||||||| Sbjct: 82343 tgcaacgaggaggagtgcgcgccggagaaggaggtggggagcctgagcgcggagtggctg 82284 Query: 141 gcggaggagaggaccaaggtcgtgggaactttccctcccaagaagaaaggatggaccggc 200 ||||||||| |||||||||| || || || ||||||||||||||||| |||||||||||| Sbjct: 82283 gcggaggagcggaccaaggtggtcggcaccttccctcccaagaagaagggatggaccggc 82224 Query: 201 ctagtcgagaaggacaccgccggccagaccaacatctactccatcgag 248 ||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct: 82223 tacgtcgagaaggacaccgccggccaaaccaacatctactccgtcgag 82176 Score = 60.0 bits (30), Expect = 4e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 247 agccggcggtgtacgtggcggagagcgccatcag 280 ||||| |||||||||||||||||||||||||||| Sbjct: 81762 agccgacggtgtacgtggcggagagcgccatcag 81729
>ref|XM_466212.1| Oryza sativa (japonica cultivar-group), mRNA Length = 819 Score = 135 bits (68), Expect = 9e-29 Identities = 106/119 (89%) Strand = Plus / Minus Query: 81 tgcaacgacgtggagtgcgccccgnagaaggagatcgggagcctgagcgtggagtggctg 140 |||||||| | ||||||||| ||| |||||||| | ||||||||||||| |||||||||| Sbjct: 512 tgcaacgaggaggagtgcgcgccggagaaggaggtggggagcctgagcgcggagtggctg 453 Query: 141 gcggaggagaggaccaaggtcgtgggaactttccctcccaagaagaaaggatggaccgg 199 ||||||||| |||||||||| || || || ||||||||||||||||| ||||||||||| Sbjct: 452 gcggaggagcggaccaaggtggtcggcaccttccctcccaagaagaagggatggaccgg 394 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 gtggcggagagcgccatcag 280 |||||||||||||||||||| Sbjct: 393 gtggcggagagcgccatcag 374
>emb|AL139042.15| Human DNA sequence from clone RP11-459O1 on chromosome 6 Contains an actin beta (ACTB) pseudogene and part of a novel gene, complete sequence Length = 107745 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Minus Query: 17 caatggcaacagcaggttcttgacag 42 |||||||||||||||||| ||||||| Sbjct: 107072 caatggcaacagcaggtttttgacag 107047
>emb|AL929433.10| Mouse DNA sequence from clone RP23-193M23 on chromosome 4, complete sequence Length = 198426 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Plus Query: 17 caatggcaacagcaggttcttgacag 42 |||||||||||||||||| ||||||| Sbjct: 110425 caatggcaacagcaggtttttgacag 110450
>emb|Z83223.1|CEE01G4 Caenorhabditis elegans Cosmid E01G4, complete sequence Length = 43442 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 tcgagaaggacaccgccggc 224 |||||||||||||||||||| Sbjct: 8217 tcgagaaggacaccgccggc 8198
>gb|AC121932.2| Mus musculus BAC clone RP24-205N24 from 17, complete sequence Length = 152782 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 ctttccctcccaagaagaaa 188 |||||||||||||||||||| Sbjct: 127848 ctttccctcccaagaagaaa 127829
>gb|AY217749.1| Vibrio parahaemolyticus capsule polysaccharide locus, partial sequence Length = 11750 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 tagtcgagaaggacaccgcc 221 |||||||||||||||||||| Sbjct: 5910 tagtcgagaaggacaccgcc 5891
>emb|AL590464.1|SCO590464 Streptomyces coelicolor plasmid SCP1; segment 2/2 Length = 178073 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 ccatcgagccggcggtgtac 260 |||||||||||||||||||| Sbjct: 136410 ccatcgagccggcggtgtac 136429
>emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; segment 1/2 Length = 178000 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 ccatcgagccggcggtgtac 260 |||||||||||||||||||| Sbjct: 41664 ccatcgagccggcggtgtac 41645
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 gcaggttcttgacagtctcctgca 51 ||||||||| |||||||||||||| Sbjct: 2106533 gcaggttctcgacagtctcctgca 2106510
>dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 2, complete sequence Length = 1877212 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 tagtcgagaaggacaccgcc 221 |||||||||||||||||||| Sbjct: 1479948 tagtcgagaaggacaccgcc 1479929
>ref|NM_064431.2| Caenorhabditis elegans E01G4.2 (E01G4.2) mRNA, complete cds Length = 1401 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 tcgagaaggacaccgccggc 224 |||||||||||||||||||| Sbjct: 1238 tcgagaaggacaccgccggc 1257
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 ccggcacggcggggacgtcg 303 |||||||||||||||||||| Sbjct: 3101598 ccggcacggcggggacgtcg 3101617 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,949,114 Number of Sequences: 3902068 Number of extensions: 1949114 Number of successful extensions: 39467 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39362 Number of HSP's gapped (non-prelim): 104 length of query: 305 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 283 effective length of database: 17,147,199,772 effective search space: 4852657535476 effective search space used: 4852657535476 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
