ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd13i08 |
|---|---|
| Clone Library Name | barley_pub |
>RGP1_XENLA (O13066) Ran GTPase-activating protein 1| Length = 580 Score = 33.1 bits (74), Expect = 0.86 Identities = 16/45 (35%), Positives = 27/45 (60%) Frame = +1 Query: 577 VSALLEPVHYMHDVGVISDDDHEDDAGGISDDDHEDDVGGMSDDD 711 V +LE ++ + +G +SDD+ EDD D+D +DD +DD+ Sbjct: 341 VQEILESINMANILGSLSDDEDEDDDD--DDEDDDDDEDDENDDE 383
>PLIN_HUMAN (O60240) Perilipin (PERI) (Lipid droplet-associated protein)| Length = 522 Score = 32.7 bits (73), Expect = 1.1 Identities = 20/84 (23%), Positives = 35/84 (41%) Frame = +1 Query: 436 EGHSILKYLPGAKDLSIDDLLQDDTNDSLEWHHLVARYRQMNRRAAVVSALLEPVHYMHD 615 +GH++ ++PG LS +W VA RR+ V V ++H Sbjct: 243 QGHTVAMWIPGVVPLS----------SLAQWGASVAMQAVSRRRSEV------RVPWLHS 286 Query: 616 VGVISDDDHEDDAGGISDDDHEDD 687 + ++DHED +D E++ Sbjct: 287 LAAAQEEDHEDQTDTEGEDTEEEE 310
>SIS2_CANTR (Q12600) Protein SIS2 (Halotolerance protein HAL3)| Length = 531 Score = 32.0 bits (71), Expect = 1.9 Identities = 15/33 (45%), Positives = 17/33 (51%) Frame = +1 Query: 613 DVGVISDDDHEDDAGGISDDDHEDDVGGMSDDD 711 D I DDD +DD DDD +DD DDD Sbjct: 478 DESAIIDDDDDDDDDDDDDDDDDDDDDDDDDDD 510 Score = 30.8 bits (68), Expect = 4.3 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = +1 Query: 622 VISDDDHEDDAGGISDDDHEDDVGGMSDDD 711 +I DDD +DD DDD +DD DD+ Sbjct: 482 IIDDDDDDDDDDDDDDDDDDDDDDDDDDDE 511
>HANG_DROME (Q9VXG1) Zinc finger protein hangover| Length = 1959 Score = 32.0 bits (71), Expect = 1.9 Identities = 16/23 (69%), Positives = 17/23 (73%), Gaps = 1/23 (4%) Frame = +1 Query: 622 VISDDDHEDDAGGI-SDDDHEDD 687 VIS DD EDD G + SDDD EDD Sbjct: 1725 VISSDDDEDDDGEVESDDDDEDD 1747
>CFDP1_RAT (Q75UQ2) Craniofacial development protein 1 (Bucentaur)| Length = 295 Score = 32.0 bits (71), Expect = 1.9 Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 3/87 (3%) Frame = +1 Query: 457 YLPGAKDLSIDDLLQDDTNDSLEWHHLVARYRQMNRRAAVVSALLEPVHYMHDVGVISDD 636 Y+P + S DD+ + D ++ + + R+A + P G++ D+ Sbjct: 18 YVPSGGEYSEDDVNELVKEDEVDGEEQAEKTKGKRRKAQSI-----PARKRKQSGLLLDE 72 Query: 637 --DHEDDAGGIS-DDDHEDDVGGMSDD 708 D E+D+GG S ++D E+ GG+ + Sbjct: 73 EEDGEEDSGGSSREEDEEEQEGGLGSE 99
>YU0O_CAEEL (Q19753) Hypothetical protein F23B12.7 in chromosome V| Length = 953 Score = 31.6 bits (70), Expect = 2.5 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 6/39 (15%) Frame = +1 Query: 613 DVGVISDDD------HEDDAGGISDDDHEDDVGGMSDDD 711 DV + DDD +E++ GG+ DDD +D G M DDD Sbjct: 820 DVDMDEDDDIDLNDLNEEEDGGMEDDDEDD--GDMDDDD 856
>ELA2B_HUMAN (P08218) Elastase-2B precursor (EC 3.4.21.71)| Length = 269 Score = 31.6 bits (70), Expect = 2.5 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = -2 Query: 428 EMSTMKSGESERPNT*TWQTHM*YISSASCFCTLPKSSIINT 303 +MS M GE RPN+ WQ + Y S+ + T S I N+ Sbjct: 25 DMSRMLGGEEARPNSWPWQVSLQYSSNGQWYHTCGGSLIANS 66
>PP4R2_YEAST (P38193) Serine/threonine-protein phosphatase 4 regulatory subunit| 2 (PP4R2) Length = 441 Score = 31.2 bits (69), Expect = 3.3 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%) Frame = +1 Query: 631 DDDHEDD--AGGISDDDHEDDVGGMSDDD 711 DDD++DD G +DD +DD G +DDD Sbjct: 268 DDDNDDDYREDGADEDDEDDDHMGSTDDD 296
>NUCKS_HUMAN (Q9H1E3) Nuclear ubiquitous casein and cyclin-dependent kinases| substrate (P1) Length = 243 Score = 31.2 bits (69), Expect = 3.3 Identities = 23/70 (32%), Positives = 32/70 (45%) Frame = +1 Query: 502 DDTNDSLEWHHLVARYRQMNRRAAVVSALLEPVHYMHDVGVISDDDHEDDAGGISDDDHE 681 +D+ D E H V + RQ AA +A + M DVG + + ED+A D Sbjct: 77 EDSEDEKEDHKNVRQQRQ----AASKAASKQREMLMEDVGSEEEQEEEDEAPFQEKDSGS 132 Query: 682 DDVGGMSDDD 711 D+ M DDD Sbjct: 133 DEDFLMEDDD 142
>PLIN_RAT (P43884) Perilipin (PERI) (Lipid droplet-associated protein)| Length = 517 Score = 31.2 bits (69), Expect = 3.3 Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 4/125 (3%) Frame = +1 Query: 325 GRVQKQEADDMYYICVCHVQVLGRSLSPLFMVDISDP--EGHSILKYLPGAKDLSIDDLL 498 GR + Q+A + V L +LS M + GHS+ ++PG LS Sbjct: 204 GRQKTQKAPKAKPSLLRRVSTLANTLSRHTMQTTARALKRGHSLAMWIPGVAPLS----- 258 Query: 499 QDDTNDSLEWHHLVARYRQMNRRAAVVSALLEPVHYMHDVGVISDDDHED--DAGGISDD 672 SL A + ++RR + V V ++H++ D++HED D G D Sbjct: 259 ------SLAQWGASAAMQVVSRRQSEVR-----VPWLHNLAASKDENHEDQTDTEGEETD 307 Query: 673 DHEDD 687 + E++ Sbjct: 308 EEEEE 312
>PLIN_MOUSE (Q8CGN5) Perilipin (PERI) (Lipid droplet-associated protein)| Length = 517 Score = 31.2 bits (69), Expect = 3.3 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 5/126 (3%) Frame = +1 Query: 325 GRVQKQEADDMYYICVCHVQVLGRSLSPLFMVDISDP--EGHSILKYLPGAKDLSIDDLL 498 GR + Q+A V V L +LS M + +GHS+ ++PG LS Sbjct: 203 GRQRTQKAPKAKPSLVRRVSTLANTLSRHTMQTTAWALKQGHSLAMWIPGVAPLS----- 257 Query: 499 QDDTNDSLEWHHLVARYRQMNRRAAVVSALLEPVHYMHDVGVISDDDHEDDA---GGISD 669 SL A + ++RR + V V ++H++ D+ H+D G +D Sbjct: 258 ------SLAQWGASAAMQVVSRRQSEVR-----VPWLHNLAASQDESHDDQTDTEGEETD 306 Query: 670 DDHEDD 687 D+ E++ Sbjct: 307 DEEEEE 312
>VID30_YEAST (P53076) Vacuolar import and degradation protein VID30| (Glucose-induced degradation protein 1) Length = 958 Score = 30.8 bits (68), Expect = 4.3 Identities = 22/85 (25%), Positives = 38/85 (44%) Frame = +1 Query: 457 YLPGAKDLSIDDLLQDDTNDSLEWHHLVARYRQMNRRAAVVSALLEPVHYMHDVGVISDD 636 + P D ++ ++D +S+ ++ M + A LLEPV ++ + S+ Sbjct: 104 FYPDVNDFTLRFGVKDSNKNSVR---VMKASSDMRKNA---QELLEPVLSEREMALNSNT 157 Query: 637 DHEDDAGGISDDDHEDDVGGMSDDD 711 E+D DDD +DD DDD Sbjct: 158 SLENDRNDDDDDDDDDDDDDDDDDD 182
>FCP1_YEAST (Q03254) RNA polymerase II subunit A C-terminal domain phosphatase| (EC 3.1.3.16) (CTD phosphatase FCP1) Length = 732 Score = 30.8 bits (68), Expect = 4.3 Identities = 21/71 (29%), Positives = 31/71 (43%) Frame = +1 Query: 499 QDDTNDSLEWHHLVARYRQMNRRAAVVSALLEPVHYMHDVGVISDDDHEDDAGGISDDDH 678 Q+ ++ E H++ +N AA S L ++DD ED SDDD Sbjct: 615 QEYLEETQEQQHMLTSQENLNLFAAGTSWL-------------NNDDDEDIPDTASDDDE 661 Query: 679 EDDVGGMSDDD 711 +DD SDD+ Sbjct: 662 DDDHDDESDDE 672
>BFR2_EMENI (Q5AW04) Protein bfr2| Length = 576 Score = 30.8 bits (68), Expect = 4.3 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%) Frame = +1 Query: 613 DVGVISDDDHEDDAGGISDD---DHEDDVGGMSDDD 711 DVG+ SDD ED+ G DD D ++D+ G D + Sbjct: 142 DVGMDSDDSEEDEDGEGFDDGFSDEDEDISGEDDSE 177
>TOP1_USTMA (P41511) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| Length = 1019 Score = 30.8 bits (68), Expect = 4.3 Identities = 15/27 (55%), Positives = 16/27 (59%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD G DDD EDD DDD Sbjct: 112 DDDDDDDEG--DDDDEEDDDDDDDDDD 136
>CASQ1_RANES (P31231) Calsequestrin-1 precursor (Calsequestrin, skeletal muscle| isoform) Length = 420 Score = 30.8 bits (68), Expect = 4.3 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +1 Query: 613 DVGVISDDDHEDDAGGISDDDHEDDVGGMSDDD 711 +V DDD +DD DDD +DD DDD Sbjct: 372 EVNTEDDDDDDDDDDDDDDDDDDDDDDDDDDDD 404 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 394 DDDDDDDDDDDDDDDDDDDDDDDDDDD 420 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 393 DDDDDDDDDDDDDDDDDDDDDDDDDDD 419 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 392 DDDDDDDDDDDDDDDDDDDDDDDDDDD 418 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 391 DDDDDDDDDDDDDDDDDDDDDDDDDDD 417 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 390 DDDDDDDDDDDDDDDDDDDDDDDDDDD 416 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 389 DDDDDDDDDDDDDDDDDDDDDDDDDDD 415 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 388 DDDDDDDDDDDDDDDDDDDDDDDDDDD 414 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 387 DDDDDDDDDDDDDDDDDDDDDDDDDDD 413 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 386 DDDDDDDDDDDDDDDDDDDDDDDDDDD 412 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 385 DDDDDDDDDDDDDDDDDDDDDDDDDDD 411 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 384 DDDDDDDDDDDDDDDDDDDDDDDDDDD 410 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 383 DDDDDDDDDDDDDDDDDDDDDDDDDDD 409 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 382 DDDDDDDDDDDDDDDDDDDDDDDDDDD 408 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 381 DDDDDDDDDDDDDDDDDDDDDDDDDDD 407 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 380 DDDDDDDDDDDDDDDDDDDDDDDDDDD 406 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 379 DDDDDDDDDDDDDDDDDDDDDDDDDDD 405
>CASQ2_CANFA (P12637) Calsequestrin-2 precursor (Calsequestrin, cardiac muscle| isoform) Length = 410 Score = 30.4 bits (67), Expect = 5.6 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD+E+ G D+D +DD G SD++ Sbjct: 374 DDDNEEGDDGDDDEDDDDDDGNNSDEE 400
>ASP_PLAFS (P13825) Aspartic acid-rich protein precursor| Length = 253 Score = 30.0 bits (66), Expect = 7.3 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD+ G DDD Sbjct: 221 DDDDDDDDDDDDDDDKDDDLDG--DDD 245
>VHS3_YEAST (Q08438) Protein VHS3 (Viable in a HAL3 SIT4 background protein 3)| Length = 674 Score = 30.0 bits (66), Expect = 7.3 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +1 Query: 628 SDDDHEDDAGGISDDDHEDDVGGMSDDD 711 +DDD +DD DDD +DD DDD Sbjct: 605 NDDDDDDDDDDDDDDDDDDDDDDDDDDD 632 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 624 DDDDDDDDDDDDDDDDDDDDDDDDDDD 650 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 623 DDDDDDDDDDDDDDDDDDDDDDDDDDD 649 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 622 DDDDDDDDDDDDDDDDDDDDDDDDDDD 648 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 621 DDDDDDDDDDDDDDDDDDDDDDDDDDD 647 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 620 DDDDDDDDDDDDDDDDDDDDDDDDDDD 646 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 619 DDDDDDDDDDDDDDDDDDDDDDDDDDD 645 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 618 DDDDDDDDDDDDDDDDDDDDDDDDDDD 644 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 617 DDDDDDDDDDDDDDDDDDDDDDDDDDD 643 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 616 DDDDDDDDDDDDDDDDDDDDDDDDDDD 642 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 615 DDDDDDDDDDDDDDDDDDDDDDDDDDD 641 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 614 DDDDDDDDDDDDDDDDDDDDDDDDDDD 640 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 613 DDDDDDDDDDDDDDDDDDDDDDDDDDD 639 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 612 DDDDDDDDDDDDDDDDDDDDDDDDDDD 638 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 611 DDDDDDDDDDDDDDDDDDDDDDDDDDD 637 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 610 DDDDDDDDDDDDDDDDDDDDDDDDDDD 636 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 609 DDDDDDDDDDDDDDDDDDDDDDDDDDD 635 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 608 DDDDDDDDDDDDDDDDDDDDDDDDDDD 634 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 607 DDDDDDDDDDDDDDDDDDDDDDDDDDD 633
>VHR2_LSDV (Q91MU3) Probable host range protein 2| Length = 198 Score = 30.0 bits (66), Expect = 7.3 Identities = 16/74 (21%), Positives = 37/74 (50%), Gaps = 3/74 (4%) Frame = +1 Query: 496 LQDDTNDSLEWHHLVARYRQMNRRAAVVSALLEPVHYMHDVG---VISDDDHEDDAGGIS 666 ++D + + ++ Y Q+N ++ + +Y++D +IS DD +D+ Sbjct: 125 IKDSRMTCINFESPISDYDQVNYLKDYIN--ISDDYYLYDACDDCIISSDDDDDNDNADD 182 Query: 667 DDDHEDDVGGMSDD 708 D++ +D+V + DD Sbjct: 183 DEEDDDEVNDIEDD 196
>UBC6_ARATH (P42750) Ubiquitin-conjugating enzyme E2-21 kDa 3 (EC 6.3.2.19)| (Ubiquitin-protein ligase 6) (Ubiquitin carrier protein 6) Length = 183 Score = 30.0 bits (66), Expect = 7.3 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 3/31 (9%) Frame = +1 Query: 622 VISDDDHED---DAGGISDDDHEDDVGGMSD 705 ++SDDD +D + G SDDD +D++ G +D Sbjct: 152 ILSDDDDDDSMSEDGSDSDDDDDDEIVGKAD 182
>NMD2_YEAST (P38798) Nonsense-mediated mRNA decay protein 2 (Up-frameshift| suppressor 2) Length = 1089 Score = 30.0 bits (66), Expect = 7.3 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 +DD +DD DDD +DD G D+D Sbjct: 889 EDDEDDDEDDDDDDDDDDDDGEEGDED 915
>SPBP_RAT (P08723) Prostatic spermine-binding protein precursor (SBP)| Length = 279 Score = 30.0 bits (66), Expect = 7.3 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 5/32 (15%) Frame = +1 Query: 631 DDDHEDDAGGISD-----DDHEDDVGGMSDDD 711 +DD +DD GG D DD EDD GG DDD Sbjct: 243 EDDDKDDDGGSGDDGDDGDDDEDDDGG--DDD 272
>YHT1_YEAST (P38835) PH domain protein YHR131C| Length = 850 Score = 30.0 bits (66), Expect = 7.3 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 812 DDDDDDDDDDDDDDDEDDDDDDDDDDD 838 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 817 DDDDDDDDDDEDDDDDDDDDDDDDDDD 843 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 816 DDDDDDDDDDDEDDDDDDDDDDDDDDD 842 Score = 29.6 bits (65), Expect = 9.5 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +1 Query: 613 DVGVISDDDHEDDAGGISDDDHEDDVGGMSDDD 711 D G DDD +DD D+D +DD DDD Sbjct: 808 DDGEDDDDDDDDDDDDDDDEDDDDDDDDDDDDD 840
>AKA11_HUMAN (Q9UKA4) A-kinase anchor protein 11 (Protein kinase A-anchoring| protein 11) (PRKA11) (A kinase anchor protein 220 kDa) (AKAP 220) (hAKAP220) Length = 1901 Score = 30.0 bits (66), Expect = 7.3 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Frame = +1 Query: 475 DLSIDDLLQDDTNDSLEWHHLVARYRQMNRRAAVVSAL-LEPVHYMHDVGV-ISDDDHED 648 +LS +D QD+++ +HHL + N ++ S+L LE Y ++ SD D D Sbjct: 1738 NLSFEDEHQDESSS---FHHL----SESNGNSSSWSSLGLEGDLYEDNLSFPTSDSDGPD 1790 Query: 649 DAGGISDDDHEDDVGGMSDD 708 D D++HED+V G+ D Sbjct: 1791 D----KDEEHEDEVEGLGQD 1806
>TBA_AJECA (P53371) Tubulin alpha chain (Fragment)| Length = 418 Score = 29.6 bits (65), Expect = 9.5 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = +1 Query: 37 VVDEIRVRPYQAFFQDDDPIYSSKTV--RFRMGHYKLPRE 150 VVDE+R PY+A F + I + + GHY + +E Sbjct: 74 VVDEVRTGPYRALFHPEQMITGKEDASNNYARGHYTVGKE 113
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 29.6 bits (65), Expect = 9.5 Identities = 24/97 (24%), Positives = 37/97 (38%) Frame = +1 Query: 421 DISDPEGHSILKYLPGAKDLSIDDLLQDDTNDSLEWHHLVARYRQMNRRAAVVSALLEPV 600 D +P P ++D +D D+ +D E + +A + PV Sbjct: 167 DEIEPAAMKAAAAAPASEDEDDEDDEDDEDDDDDEEDDSEEEAMETTPAKGKKAAKVVPV 226 Query: 601 HYMHDVGVISDDDHEDDAGGISDDDHEDDVGGMSDDD 711 + V D+D E+D DDD EDD +DD Sbjct: 227 KAKN---VAEDEDEEEDDEDEDDDDDEDDEDDDDEDD 260
>TPR_HUMAN (P12270) Nucleoprotein TPR| Length = 2349 Score = 29.6 bits (65), Expect = 9.5 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = +1 Query: 613 DVGVISDDDHEDDAGGISDDDHEDDVGGMSDD 708 DV VI DD E+D DDD ++D GM D+ Sbjct: 1942 DVIVIDSDDEEEDE---EDDDDDEDDTGMGDE 1970
>CASQ1_CHICK (P19204) Calsequestrin-1 precursor (Calsequestrin, skeletal muscle| isoform) (Aspartactin) (Laminin-binding protein) Length = 406 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 380 DDDDDDDDDDDDDDDDDDDDDDDDDDD 406 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 379 DDDDDDDDDDDDDDDDDDDDDDDDDDD 405 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 378 DDDDDDDDDDDDDDDDDDDDDDDDDDD 404 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 377 DDDDDDDDDDDDDDDDDDDDDDDDDDD 403 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 376 DDDDDDDDDDDDDDDDDDDDDDDDDDD 402 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 375 DDDDDDDDDDDDDDDDDDDDDDDDDDD 401 Score = 29.6 bits (65), Expect = 9.5 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 DDD +DD DDD +DD DDD Sbjct: 374 DDDDDDDDDDDDDDDDDDDDDDDDDDD 400
>MAK5_DEBHA (Q6BV58) ATP-dependent RNA helicase MAK5 (EC 3.6.1.-)| Length = 790 Score = 29.6 bits (65), Expect = 9.5 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 7/47 (14%) Frame = +1 Query: 592 EPVHYMHDVGVISDDDHEDDAGGISDD-------DHEDDVGGMSDDD 711 + VH D DDD +DD I DD D+EDD G DD+ Sbjct: 96 DDVHDDDDNQDDGDDDQDDDDVDIEDDEDEIIEGDNEDDFKGFDDDN 142
>ATAD2_PONPY (Q5RDX4) ATPase family AAA domain-containing protein 2| Length = 1091 Score = 29.6 bits (65), Expect = 9.5 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +1 Query: 631 DDDHEDDAGGISDDDHEDDVGGMSDDD 711 D +HEDD D+D +DD DDD Sbjct: 80 DQEHEDDGEDEDDEDEDDDDDDDDDDD 106 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 100,538,412 Number of Sequences: 219361 Number of extensions: 2181747 Number of successful extensions: 9885 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 6211 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 9201 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7196276819 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
