| Clone Name | basd13h24 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_479089.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1407 Score = 188 bits (95), Expect = 3e-45 Identities = 115/122 (94%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgttgctaaggatccatcaggaaag 60 ||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 351 aagaagtacatctacaccatcgacgacgactgcttcgttgctaaagacccatcaggaaag 410 Query: 61 gacatcaatgcacttgagcagcacattaagaaccttctgagcccttcaactccatttttc 120 || ||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||| Sbjct: 411 gatatcaatgcacttgagcagcacatcaagaaccttctgaacccttccactccatttttc 470 Query: 121 tt 122 || Sbjct: 471 tt 472
>dbj|AK061294.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-D01, full insert sequence Length = 1407 Score = 188 bits (95), Expect = 3e-45 Identities = 115/122 (94%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgttgctaaggatccatcaggaaag 60 ||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 351 aagaagtacatctacaccatcgacgacgactgcttcgttgctaaagacccatcaggaaag 410 Query: 61 gacatcaatgcacttgagcagcacattaagaaccttctgagcccttcaactccatttttc 120 || ||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||| Sbjct: 411 gatatcaatgcacttgagcagcacatcaagaaccttctgaacccttccactccatttttc 470 Query: 121 tt 122 || Sbjct: 471 tt 472
>gb|BT017085.1| Zea mays clone EL01N0360E12.c mRNA sequence Length = 1383 Score = 129 bits (65), Expect = 2e-27 Identities = 94/104 (90%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgttgctaaggatccatcaggaaag 60 ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| || ||| Sbjct: 381 aagaagtacatctacaccatcgacgacgactgcttcgttgccaaggacccatctggcaag 440 Query: 61 gacatcaatgcacttgagcagcacattaagaaccttctgagccc 104 || |||||||| |||||||||||||| |||||||| || ||||| Sbjct: 441 gatatcaatgctcttgagcagcacatcaagaacctcctcagccc 484
>gb|AY111237.1| Zea mays CL1948_1 mRNA sequence Length = 1481 Score = 129 bits (65), Expect = 2e-27 Identities = 94/104 (90%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgttgctaaggatccatcaggaaag 60 ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| || ||| Sbjct: 388 aagaagtacatctacaccatcgacgacgactgcttcgttgccaaggacccatctggcaag 447 Query: 61 gacatcaatgcacttgagcagcacattaagaaccttctgagccc 104 || |||||||| |||||||||||||| |||||||| || ||||| Sbjct: 448 gatatcaatgctcttgagcagcacatcaagaacctcctcagccc 491
>gb|U89897.1|ZMU89897 Zea mays golgi associated protein se-wap41 mRNA, complete cds Length = 1480 Score = 129 bits (65), Expect = 2e-27 Identities = 94/104 (90%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgttgctaaggatccatcaggaaag 60 ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| || ||| Sbjct: 417 aagaagtacatctacaccatcgacgacgactgcttcgttgccaaggacccatctggcaag 476 Query: 61 gacatcaatgcacttgagcagcacattaagaaccttctgagccc 104 || |||||||| |||||||||||||| |||||||| || ||||| Sbjct: 477 gatatcaatgctcttgagcagcacatcaagaacctcctcagccc 520
>gb|AY389569.1| Hyacinthus orientalis reversibly glycosylated polypeptide (RGP) mRNA, partial cds Length = 642 Score = 123 bits (62), Expect = 1e-25 Identities = 100/113 (88%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgttgctaaggatccatcaggaaag 60 ||||||||||| ||||||||||| || |||||||||||||| || || ||||| || ||| Sbjct: 141 aagaagtacatctacaccatcgatgatgactgcttcgttgccaaagacccatccggcaag 200 Query: 61 gacatcaatgcacttgagcagcacattaagaaccttctgagcccttcaactcc 113 ||||||||||| |||||||||||||| ||||| || || |||||||||||||| Sbjct: 201 gacatcaatgctcttgagcagcacataaagaatctcctcagcccttcaactcc 253
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 123 bits (62), Expect = 1e-25 Identities = 80/86 (93%) Strand = Plus / Plus Query: 37 gttgctaaggatccatcaggaaaggacatcaatgcacttgagcagcacattaagaacctt 96 |||||||| || |||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct: 24721726 gttgctaaagacccatcaggaaaggatatcaatgcacttgagcagcacatcaagaacctt 24721785 Query: 97 ctgagcccttcaactccatttttctt 122 |||| |||||| |||||||||||||| Sbjct: 24721786 ctgaacccttccactccatttttctt 24721811 Score = 69.9 bits (35), Expect = 2e-09 Identities = 37/38 (97%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgt 38 ||||||||||| |||||||||||||||||||||||||| Sbjct: 24720046 aagaagtacatctacaccatcgacgacgactgcttcgt 24720083
>dbj|AP005175.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0040H10 Length = 132919 Score = 123 bits (62), Expect = 1e-25 Identities = 80/86 (93%) Strand = Plus / Plus Query: 37 gttgctaaggatccatcaggaaaggacatcaatgcacttgagcagcacattaagaacctt 96 |||||||| || |||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct: 77663 gttgctaaagacccatcaggaaaggatatcaatgcacttgagcagcacatcaagaacctt 77722 Query: 97 ctgagcccttcaactccatttttctt 122 |||| |||||| |||||||||||||| Sbjct: 77723 ctgaacccttccactccatttttctt 77748 Score = 69.9 bits (35), Expect = 2e-09 Identities = 37/38 (97%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgt 38 ||||||||||| |||||||||||||||||||||||||| Sbjct: 75983 aagaagtacatctacaccatcgacgacgactgcttcgt 76020
>ref|NM_194076.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1519 Score = 121 bits (61), Expect = 5e-25 Identities = 93/104 (89%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgttgctaaggatccatcaggaaag 60 ||||||||| | | ||||||||||||||||||||||||||| ||||| ||||| || ||| Sbjct: 396 aagaagtacgtcttcaccatcgacgacgactgcttcgttgccaaggacccatctggcaag 455 Query: 61 gacatcaatgcacttgagcagcacattaagaaccttctgagccc 104 ||||||||||| |||||||||||||| |||||||| || ||||| Sbjct: 456 gacatcaatgctcttgagcagcacatcaagaacctcctcagccc 499
>gb|AF294725.1|AF294725 Oryza sativa reversibly glycosylated polypeptide mRNA, complete cds Length = 1136 Score = 121 bits (61), Expect = 5e-25 Identities = 93/104 (89%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgttgctaaggatccatcaggaaag 60 ||||||||| | | ||||||||||||||||||||||||||| ||||| ||||| || ||| Sbjct: 331 aagaagtacgtcttcaccatcgacgacgactgcttcgttgccaaggacccatctggcaag 390 Query: 61 gacatcaatgcacttgagcagcacattaagaaccttctgagccc 104 ||||||||||| |||||||||||||| |||||||| || ||||| Sbjct: 391 gacatcaatgctcttgagcagcacatcaagaacctcctcagccc 434
>emb|AJ011078.1|OSA011078 Oryza sativa mRNA for RGP1 protein Length = 1310 Score = 121 bits (61), Expect = 5e-25 Identities = 93/104 (89%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgttgctaaggatccatcaggaaag 60 ||||||||| | | ||||||||||||||||||||||||||| ||||| ||||| || ||| Sbjct: 384 aagaagtacgtcttcaccatcgacgacgactgcttcgttgccaaggacccatctggcaag 443 Query: 61 gacatcaatgcacttgagcagcacattaagaaccttctgagccc 104 ||||||||||| |||||||||||||| |||||||| || ||||| Sbjct: 444 gacatcaatgctcttgagcagcacatcaagaacctcctcagccc 487
>emb|Y18624.1|OSA18624 Oryza sativa mRNA for reversibly glycosylated polypeptide Length = 1384 Score = 121 bits (61), Expect = 5e-25 Identities = 93/104 (89%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgttgctaaggatccatcaggaaag 60 ||||||||| | | ||||||||||||||||||||||||||| ||||| ||||| || ||| Sbjct: 380 aagaagtacgtcttcaccatcgacgacgactgcttcgttgccaaggacccatctggcaag 439 Query: 61 gacatcaatgcacttgagcagcacattaagaaccttctgagccc 104 ||||||||||| |||||||||||||| |||||||| || ||||| Sbjct: 440 gacatcaatgctcttgagcagcacatcaagaacctcctcagccc 483
>dbj|AK098933.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029G13, full insert sequence Length = 1492 Score = 121 bits (61), Expect = 5e-25 Identities = 93/104 (89%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgttgctaaggatccatcaggaaag 60 ||||||||| | | ||||||||||||||||||||||||||| ||||| ||||| || ||| Sbjct: 400 aagaagtacgtcttcaccatcgacgacgactgcttcgttgccaaggacccatctggcaag 459 Query: 61 gacatcaatgcacttgagcagcacattaagaaccttctgagccc 104 ||||||||||| |||||||||||||| |||||||| || ||||| Sbjct: 460 gacatcaatgctcttgagcagcacatcaagaacctcctcagccc 503
>dbj|AK061813.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-B03, full insert sequence Length = 1509 Score = 121 bits (61), Expect = 5e-25 Identities = 93/104 (89%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgttgctaaggatccatcaggaaag 60 ||||||||| | | ||||||||||||||||||||||||||| ||||| ||||| || ||| Sbjct: 399 aagaagtacgtcttcaccatcgacgacgactgcttcgttgccaaggacccatctggcaag 458 Query: 61 gacatcaatgcacttgagcagcacattaagaaccttctgagccc 104 ||||||||||| |||||||||||||| |||||||| || ||||| Sbjct: 459 gacatcaatgctcttgagcagcacatcaagaacctcctcagccc 502
>gb|AF005279.1|AF005279 Vigna unguiculata type IIIa membrane protein cp-wap13 mRNA, complete cds Length = 1275 Score = 121 bits (61), Expect = 5e-25 Identities = 84/92 (91%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgttgctaaggatccatcaggaaag 60 ||||||||||| ||||||||||||||||| ||||||||||||||||| || || ||||| Sbjct: 370 aagaagtacatctacaccatcgacgacgattgcttcgttgctaaggacccgtctggaaaa 429 Query: 61 gacatcaatgcacttgagcagcacattaagaa 92 || |||||||||||||| |||||||||||||| Sbjct: 430 gatatcaatgcacttgaacagcacattaagaa 461
>emb|Y18626.1|TAE18626 Triticum aestivum mRNA for reversibly glycosylated polypeptide Length = 1393 Score = 101 bits (51), Expect = 5e-19 Identities = 104/122 (85%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgttgctaaggatccatcaggaaag 60 ||||||||| | | ||||||||| |||||||||||||| || ||||| ||||| || || Sbjct: 385 aagaagtacgtcttcaccatcgatgacgactgcttcgtggccaaggacccatctggcaaa 444 Query: 61 gacatcaatgcacttgagcagcacattaagaaccttctgagcccttcaactccatttttc 120 ||||||||||| |||||||||||||| |||||||| || ||||| || || || |||||| Sbjct: 445 gacatcaatgctcttgagcagcacatcaagaacctcctcagcccgtccaccccgtttttc 504 Query: 121 tt 122 || Sbjct: 505 tt 506
>ref|NM_111090.2| Arabidopsis thaliana RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1) AT3G02230 (RGP1) mRNA, complete cds Length = 1385 Score = 93.7 bits (47), Expect = 1e-16 Identities = 103/122 (84%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgttgctaaggatccatcaggaaag 60 ||||||||||| | ||| || || ||||| ||||||||||||||||||||||| ||||| Sbjct: 375 aagaagtacatcttcactattgatgacgattgcttcgttgctaaggatccatctggaaaa 434 Query: 61 gacatcaatgcacttgagcagcacattaagaaccttctgagcccttcaactccatttttc 120 | | || || |||||||| ||||| ||||||||||| |||| ||||||||||||||| Sbjct: 435 gctgtgaacgctcttgagcaacacatcaagaaccttctctgcccatcaactccatttttc 494 Query: 121 tt 122 || Sbjct: 495 tt 496
>gb|BT008841.1| Arabidopsis thaliana At3g02230 mRNA, complete cds Length = 1074 Score = 93.7 bits (47), Expect = 1e-16 Identities = 103/122 (84%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgttgctaaggatccatcaggaaag 60 ||||||||||| | ||| || || ||||| ||||||||||||||||||||||| ||||| Sbjct: 307 aagaagtacatcttcactattgatgacgattgcttcgttgctaaggatccatctggaaaa 366 Query: 61 gacatcaatgcacttgagcagcacattaagaaccttctgagcccttcaactccatttttc 120 | | || || |||||||| ||||| ||||||||||| |||| ||||||||||||||| Sbjct: 367 gctgtgaacgctcttgagcaacacatcaagaaccttctctgcccatcaactccatttttc 426 Query: 121 tt 122 || Sbjct: 427 tt 428
>gb|BT002409.1| Arabidopsis thaliana reversibly glycosylated polypeptide-1 (At3g02230) mRNA, complete cds Length = 1374 Score = 93.7 bits (47), Expect = 1e-16 Identities = 103/122 (84%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgttgctaaggatccatcaggaaag 60 ||||||||||| | ||| || || ||||| ||||||||||||||||||||||| ||||| Sbjct: 378 aagaagtacatcttcactattgatgacgattgcttcgttgctaaggatccatctggaaaa 437 Query: 61 gacatcaatgcacttgagcagcacattaagaaccttctgagcccttcaactccatttttc 120 | | || || |||||||| ||||| ||||||||||| |||| ||||||||||||||| Sbjct: 438 gctgtgaacgctcttgagcaacacatcaagaaccttctctgcccatcaactccatttttc 497 Query: 121 tt 122 || Sbjct: 498 tt 499
>gb|AF013627.1|AF013627 Arabidopsis thaliana reversibly glycosylated polypeptide-1 (AtRGP) mRNA, complete cds Length = 1393 Score = 93.7 bits (47), Expect = 1e-16 Identities = 103/122 (84%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgttgctaaggatccatcaggaaag 60 ||||||||||| | ||| || || ||||| ||||||||||||||||||||||| ||||| Sbjct: 378 aagaagtacatcttcactattgatgacgattgcttcgttgctaaggatccatctggaaaa 437 Query: 61 gacatcaatgcacttgagcagcacattaagaaccttctgagcccttcaactccatttttc 120 | | || || |||||||| ||||| ||||||||||| |||| ||||||||||||||| Sbjct: 438 gctgtgaacgctcttgagcaacacatcaagaaccttctctgcccatcaactccatttttc 497 Query: 121 tt 122 || Sbjct: 498 tt 499
>emb|AJ292078.1|GHI292078 Gossypium hirsutum mRNA for reversibly glycosylated polypeptide (rgp1 gene) Length = 1331 Score = 85.7 bits (43), Expect = 3e-14 Identities = 102/122 (83%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgttgctaaggatccatcaggaaag 60 ||||| ||||| || ||||| || || |||||||| |||||||| |||||||| || || Sbjct: 333 aagaaatacatctataccattgatgatgactgctttgttgctaaagatccatctggcaaa 392 Query: 61 gacatcaatgcacttgagcagcacattaagaaccttctgagcccttcaactccatttttc 120 |||||||||||| | || |||||||| ||||||| ||||| || || |||||||||||| Sbjct: 393 gacatcaatgcattggaacagcacatacagaacctactgagtccatccactccatttttc 452 Query: 121 tt 122 || Sbjct: 453 tt 454
>ref|NM_111724.2| Arabidopsis thaliana RGP3 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 3); alpha-1,4-glucan-protein synthase (UDP-forming) AT3G08900 (RGP3) mRNA, complete cds Length = 1350 Score = 79.8 bits (40), Expect = 2e-12 Identities = 81/95 (85%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgttgctaaggatccatcaggaaag 60 ||||||||||| |||||||| || || || ||||| ||||| ||||||||| |||| || Sbjct: 295 aagaagtacatctacaccattgatgatgattgctttgttgcaaaggatccaacagggaaa 354 Query: 61 gacatcaatgcacttgagcagcacattaagaacct 95 || |||||||| ||||||||||| || |||||||| Sbjct: 355 gagatcaatgcgcttgagcagcatatcaagaacct 389
>gb|AF034255.2|AF034255 Arabidopsis thaliana reversibly glycosylated polypeptide-3 (RGP) mRNA, complete cds Length = 1374 Score = 79.8 bits (40), Expect = 2e-12 Identities = 81/95 (85%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgttgctaaggatccatcaggaaag 60 ||||||||||| |||||||| || || || ||||| ||||| ||||||||| |||| || Sbjct: 319 aagaagtacatctacaccattgatgatgattgctttgttgcaaaggatccaacagggaaa 378 Query: 61 gacatcaatgcacttgagcagcacattaagaacct 95 || |||||||| ||||||||||| || |||||||| Sbjct: 379 gagatcaatgcgcttgagcagcatatcaagaacct 413
>gb|U31565.1|PSU31565 Pisum sativum reversibly glycosylatable polypeptide (RGP1) mRNA, complete cds Length = 1298 Score = 77.8 bits (39), Expect = 7e-12 Identities = 101/122 (82%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgttgctaaggatccatcaggaaag 60 |||||||| || |||||||| || || || ||||| |||||||| || ||| | || | Sbjct: 307 aagaagtatatctacaccattgatgatgattgctttgttgctaaagacccaactgggcat 366 Query: 61 gacatcaatgcacttgagcagcacattaagaaccttctgagcccttcaactccatttttc 120 || ||||||||||||||||||||||||||||| || || || || || |||||||||||| Sbjct: 367 gaaatcaatgcacttgagcagcacattaagaatctccttagtccatccactccatttttc 426 Query: 121 tt 122 || Sbjct: 427 tt 428
>gb|AY622990.1| Lycopersicon esculentum UDP-glucose:protein transglucosylase-like protein SlUPTG1 mRNA, complete cds Length = 1398 Score = 75.8 bits (38), Expect = 3e-11 Identities = 94/113 (83%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgttgctaaggatccatcaggaaag 60 |||||||| || |||||||| || || || ||||| || || ||||| || || || ||| Sbjct: 314 aagaagtatatctacaccattgatgatgattgctttgtggccaaggacccgtctggtaag 373 Query: 61 gacatcaatgcacttgagcagcacattaagaaccttctgagcccttcaactcc 113 || ||||||||||||||||||||||| |||||||| ||| |||| || ||||| Sbjct: 374 gatatcaatgcacttgagcagcacatcaagaacctcctgtgcccatctactcc 426
>gb|BT012716.1| Lycopersicon esculentum clone 113599F, mRNA sequence Length = 1413 Score = 75.8 bits (38), Expect = 3e-11 Identities = 94/113 (83%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgttgctaaggatccatcaggaaag 60 |||||||| || |||||||| || || || ||||| || || ||||| || || || ||| Sbjct: 332 aagaagtatatctacaccattgatgatgattgctttgtggccaaggacccgtctggtaag 391 Query: 61 gacatcaatgcacttgagcagcacattaagaaccttctgagcccttcaactcc 113 || ||||||||||||||||||||||| |||||||| ||| |||| || ||||| Sbjct: 392 gatatcaatgcacttgagcagcacatcaagaacctcctgtgcccatctactcc 444
>emb|AJ223252.2|SOT223252 Solanum tuberosum mRNA for UDP-glucose:protein transglucosylase (uptg1 gene) Length = 1392 Score = 73.8 bits (37), Expect = 1e-10 Identities = 87/104 (83%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgttgctaaggatccatcaggaaag 60 |||||||| || |||||||| || || || ||||| || || ||||| || || || ||| Sbjct: 308 aagaagtatatctacaccattgatgatgattgctttgtggccaaggacccgtctggtaag 367 Query: 61 gacatcaatgcacttgagcagcacattaagaaccttctgagccc 104 || ||||||||||||||||||||||| |||||||| ||| |||| Sbjct: 368 gatatcaatgcacttgagcagcacatcaagaacctcctgtgccc 411
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 71.9 bits (36), Expect = 4e-10 Identities = 60/68 (88%) Strand = Plus / Minus Query: 37 gttgctaaggatccatcaggaaaggacatcaatgcacttgagcagcacattaagaacctt 96 ||||| ||||| ||||| || |||||||||||||| |||||||||||||| |||||||| Sbjct: 22190508 gttgccaaggacccatctggcaaggacatcaatgctcttgagcagcacatcaagaacctc 22190449 Query: 97 ctgagccc 104 || ||||| Sbjct: 22190448 ctcagccc 22190441 Score = 54.0 bits (27), Expect = 1e-04 Identities = 35/38 (92%) Strand = Plus / Minus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgt 38 ||||||||| | | |||||||||||||||||||||||| Sbjct: 22191381 aagaagtacgtcttcaccatcgacgacgactgcttcgt 22191344
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 71.9 bits (36), Expect = 4e-10 Identities = 60/68 (88%) Strand = Plus / Minus Query: 37 gttgctaaggatccatcaggaaaggacatcaatgcacttgagcagcacattaagaacctt 96 ||||| ||||| ||||| || |||||||||||||| |||||||||||||| |||||||| Sbjct: 22183537 gttgccaaggacccatctggcaaggacatcaatgctcttgagcagcacatcaagaacctc 22183478 Query: 97 ctgagccc 104 || ||||| Sbjct: 22183477 ctcagccc 22183470 Score = 54.0 bits (27), Expect = 1e-04 Identities = 35/38 (92%) Strand = Plus / Minus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgt 38 ||||||||| | | |||||||||||||||||||||||| Sbjct: 22184410 aagaagtacgtcttcaccatcgacgacgactgcttcgt 22184373
>gb|AC090874.9| Oryza sativa chromosome 3 BAC OJ1523_A02 genomic sequence, complete sequence Length = 132987 Score = 71.9 bits (36), Expect = 4e-10 Identities = 60/68 (88%) Strand = Plus / Plus Query: 37 gttgctaaggatccatcaggaaaggacatcaatgcacttgagcagcacattaagaacctt 96 ||||| ||||| ||||| || |||||||||||||| |||||||||||||| |||||||| Sbjct: 34354 gttgccaaggacccatctggcaaggacatcaatgctcttgagcagcacatcaagaacctc 34413 Query: 97 ctgagccc 104 || ||||| Sbjct: 34414 ctcagccc 34421 Score = 54.0 bits (27), Expect = 1e-04 Identities = 35/38 (92%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgt 38 ||||||||| | | |||||||||||||||||||||||| Sbjct: 33481 aagaagtacgtcttcaccatcgacgacgactgcttcgt 33518
>gb|AC009755.7|ATAC009755 Arabidopsis thaliana chromosome III BAC F14P3 genomic sequence, complete sequence Length = 94369 Score = 67.9 bits (34), Expect = 6e-09 Identities = 73/86 (84%) Strand = Plus / Minus Query: 37 gttgctaaggatccatcaggaaaggacatcaatgcacttgagcagcacattaagaacctt 96 ||||||||||||||||| ||||| | | || || |||||||| ||||| ||||||||| Sbjct: 58478 gttgctaaggatccatctggaaaagctgtgaacgctcttgagcaacacatcaagaacctt 58419 Query: 97 ctgagcccttcaactccatttttctt 122 || |||| ||||||||||||||||| Sbjct: 58418 ctctgcccatcaactccatttttctt 58393
>ref|NM_121569.2| Arabidopsis thaliana RGP2; alpha-1,4-glucan-protein synthase (UDP-forming) AT5G15650 (RGP2) mRNA, complete cds Length = 1530 Score = 61.9 bits (31), Expect = 4e-07 Identities = 81/98 (82%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgttgctaaggatccatcaggaaag 60 |||||||| || | |||||| || ||||| ||||||||||| |||||||||||||| || Sbjct: 353 aagaagtatatcttcaccattgatgacgattgcttcgttgccaaggatccatcaggcaaa 412 Query: 61 gacatcaatgcacttgagcagcacattaagaaccttct 98 | | || || |||||||| ||||| ||||||||||| Sbjct: 413 gcagtgaacgctcttgagcaacacatcaagaaccttct 450
>gb|AY120691.1| Arabidopsis thaliana AT5g15650/F14F8_30 mRNA, complete cds Length = 1083 Score = 61.9 bits (31), Expect = 4e-07 Identities = 81/98 (82%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgttgctaaggatccatcaggaaag 60 |||||||| || | |||||| || ||||| ||||||||||| |||||||||||||| || Sbjct: 307 aagaagtatatcttcaccattgatgacgattgcttcgttgccaaggatccatcaggcaaa 366 Query: 61 gacatcaatgcacttgagcagcacattaagaaccttct 98 | | || || |||||||| ||||| ||||||||||| Sbjct: 367 gcagtgaacgctcttgagcaacacatcaagaaccttct 404
>gb|AY039846.1| Arabidopsis thaliana AT5g15650/F14F8_30 mRNA, complete cds Length = 1411 Score = 61.9 bits (31), Expect = 4e-07 Identities = 81/98 (82%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgttgctaaggatccatcaggaaag 60 |||||||| || | |||||| || ||||| ||||||||||| |||||||||||||| || Sbjct: 354 aagaagtatatcttcaccattgatgacgattgcttcgttgccaaggatccatcaggcaaa 413 Query: 61 gacatcaatgcacttgagcagcacattaagaaccttct 98 | | || || |||||||| ||||| ||||||||||| Sbjct: 414 gcagtgaacgctcttgagcaacacatcaagaaccttct 451
>emb|BX831174.1|CNS09ZDG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS64ZH06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1341 Score = 61.9 bits (31), Expect = 4e-07 Identities = 81/98 (82%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgttgctaaggatccatcaggaaag 60 |||||||| || | |||||| || ||||| ||||||||||| |||||||||||||| || Sbjct: 341 aagaagtatatcttcaccattgatgacgattgcttcgttgccaaggatccatcaggcaaa 400 Query: 61 gacatcaatgcacttgagcagcacattaagaaccttct 98 | | || || |||||||| ||||| ||||||||||| Sbjct: 401 gcagtgaacgctcttgagcaacacatcaagaaccttct 438
>emb|BX830856.1|CNS09ZF4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS31ZC08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1348 Score = 61.9 bits (31), Expect = 4e-07 Identities = 81/98 (82%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgttgctaaggatccatcaggaaag 60 |||||||| || | |||||| || ||||| ||||||||||| |||||||||||||| || Sbjct: 331 aagaagtatatcttcaccattgatgacgattgcttcgttgccaaggatccatcaggcaaa 390 Query: 61 gacatcaatgcacttgagcagcacattaagaaccttct 98 | | || || |||||||| ||||| ||||||||||| Sbjct: 391 gcagtgaacgctcttgagcaacacatcaagaaccttct 428
>emb|BX830946.1|CNS09YLX Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS40ZH01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1351 Score = 61.9 bits (31), Expect = 4e-07 Identities = 81/98 (82%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgttgctaaggatccatcaggaaag 60 |||||||| || | |||||| || ||||| ||||||||||| |||||||||||||| || Sbjct: 337 aagaagtatatcttcaccattgatgacgattgcttcgttgccaaggatccatcaggcaaa 396 Query: 61 gacatcaatgcacttgagcagcacattaagaaccttct 98 | | || || |||||||| ||||| ||||||||||| Sbjct: 397 gcagtgaacgctcttgagcaacacatcaagaaccttct 434
>gb|AY087476.1| Arabidopsis thaliana clone 35863 mRNA, complete sequence Length = 1396 Score = 61.9 bits (31), Expect = 4e-07 Identities = 81/98 (82%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgttgctaaggatccatcaggaaag 60 |||||||| || | |||||| || ||||| ||||||||||| |||||||||||||| || Sbjct: 355 aagaagtatatcttcaccattgatgacgattgcttcgttgccaaggatccatcaggcaaa 414 Query: 61 gacatcaatgcacttgagcagcacattaagaaccttct 98 | | || || |||||||| ||||| ||||||||||| Sbjct: 415 gcagtgaacgctcttgagcaacacatcaagaaccttct 452
>gb|AF013628.1|AF013628 Arabidopsis thaliana reversibly glycosylated polypeptide-2 (AtRGP) mRNA, complete cds Length = 1401 Score = 61.9 bits (31), Expect = 4e-07 Identities = 81/98 (82%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgttgctaaggatccatcaggaaag 60 |||||||| || | |||||| || ||||| ||||||||||| |||||||||||||| || Sbjct: 328 aagaagtatatcttcaccattgatgacgattgcttcgttgccaaggatccatcaggcaaa 387 Query: 61 gacatcaatgcacttgagcagcacattaagaaccttct 98 | | || || |||||||| ||||| ||||||||||| Sbjct: 388 gcagtgaacgctcttgagcaacacatcaagaaccttct 425
>gb|DQ207853.1| Solanum tuberosum clone 075G08 UDP-glucose:protein transglucosylase-like mRNA, complete cds Length = 1244 Score = 56.0 bits (28), Expect = 2e-05 Identities = 78/95 (82%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgttgctaaggatccatcaggaaag 60 |||||||| || ||||| || || || || ||||| || || || ||||| || || || Sbjct: 312 aagaagtatatctacactattgatgatgattgctttgtggccaaagatccttctggcaaa 371 Query: 61 gacatcaatgcacttgagcagcacattaagaacct 95 ||||||||||| |||||||||||||| |||||||| Sbjct: 372 gacatcaatgctcttgagcagcacataaagaacct 406
>emb|AJ310910.1|STU310910 Solanum tuberosum mRNA for UDP-Glucose:protein transglucosylase (uptg2 gene) Length = 1303 Score = 56.0 bits (28), Expect = 2e-05 Identities = 78/95 (82%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgttgctaaggatccatcaggaaag 60 |||||||| || ||||| || || || || ||||| || || || ||||| || || || Sbjct: 323 aagaagtatatctacactattgatgatgattgctttgtggccaaagatccttctggcaaa 382 Query: 61 gacatcaatgcacttgagcagcacattaagaacct 95 ||||||||||| |||||||||||||| |||||||| Sbjct: 383 gacatcaatgctcttgagcagcacataaagaacct 417
>gb|AC092778.5| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0015G17, complete sequence Length = 158173 Score = 54.0 bits (27), Expect = 1e-04 Identities = 35/38 (92%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgt 38 ||||||||| | | |||||||||||||||||||||||| Sbjct: 157437 aagaagtacgtcttcaccatcgacgacgactgcttcgt 157474
>gb|AC010871.7|ATAC010871 Arabidopsis thaliana chromosome III BAC T16O11 genomic sequence, complete sequence Length = 80381 Score = 54.0 bits (27), Expect = 1e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 37 gttgctaaggatccatcaggaaaggacatcaatgcacttgagcagcacattaagaacct 95 ||||| ||||||||| |||| || || |||||||| ||||||||||| || |||||||| Sbjct: 47262 gttgcaaaggatccaacagggaaagagatcaatgcgcttgagcagcatatcaagaacct 47320
>gb|DQ415921.1| Cleome spinosa clone BAC Cs2, complete sequence Length = 132380 Score = 46.1 bits (23), Expect = 0.023 Identities = 34/38 (89%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgt 38 ||||||||||| | ||||||||| ||||| |||||||| Sbjct: 25894 aagaagtacatcttcaccatcgatgacgattgcttcgt 25931
>gb|DQ415920.1| Cleome spinosa clone BAC Cs3, complete sequence Length = 141360 Score = 46.1 bits (23), Expect = 0.023 Identities = 34/38 (89%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacgacgactgcttcgt 38 ||||||||||| | |||||| |||||||| |||||||| Sbjct: 2812 aagaagtacatcttcaccattgacgacgattgcttcgt 2849
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 46.1 bits (23), Expect = 0.023 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacga 26 ||||||||||| |||||||||||||| Sbjct: 4299678 aagaagtacatctacaccatcgacga 4299703
>dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0554A06 Length = 165311 Score = 46.1 bits (23), Expect = 0.023 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacga 26 ||||||||||| |||||||||||||| Sbjct: 144899 aagaagtacatctacaccatcgacga 144924
>gb|AY341443.1| Phaseolus vulgaris cultivar Sprite BAC 78L17, partial sequence Length = 106592 Score = 40.1 bits (20), Expect = 1.4 Identities = 31/35 (88%) Strand = Plus / Minus Query: 1 aagaagtacatntacaccatcgacgacgactgctt 35 ||||||||||| |||||||| || || |||||||| Sbjct: 49739 aagaagtacatctacaccattgatgatgactgctt 49705
>ref|XM_815340.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053511807.200) partial mRNA Length = 4431 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 ccttcaactccatttttctt 122 |||||||||||||||||||| Sbjct: 524 ccttcaactccatttttctt 505
>gb|AC093663.4| Homo sapiens BAC clone RP11-477G18 from 4, complete sequence Length = 171745 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 ctaaggatccatcaggaaag 60 |||||||||||||||||||| Sbjct: 59002 ctaaggatccatcaggaaag 59021
>gb|AC055818.9|AC055818 Mus musculus, clone RP23-129C12, complete sequence Length = 237678 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 aggatccatcaggaaaggac 63 |||||||||||||||||||| Sbjct: 122458 aggatccatcaggaaaggac 122439
>gb|AC159266.3| Mus musculus BAC clone RP24-64D24 from chromosome 8, complete sequence Length = 212727 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 93 ccttctgagcccttcaact 111 ||||||||||||||||||| Sbjct: 60819 ccttctgagcccttcaact 60801
>gb|AC159277.3| Mus musculus BAC clone RP23-356J2 from chromosome 17, complete sequence Length = 231245 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 49 ccatcaggaaaggacatca 67 ||||||||||||||||||| Sbjct: 140169 ccatcaggaaaggacatca 140151
>gb|AC163742.4| Mus musculus BAC clone RP23-383K19 from chromosome 14, complete sequence Length = 199109 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 43 aaggatccatcaggaaagg 61 ||||||||||||||||||| Sbjct: 113595 aaggatccatcaggaaagg 113613
>gb|AC095059.3| Homo sapiens BAC clone RP11-428L21 from 4, complete sequence Length = 109586 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 102 cccttcaactccatttttc 120 ||||||||||||||||||| Sbjct: 86787 cccttcaactccatttttc 86805
>gb|AC092239.1|AC092239 Drosophila melanogaster, chromosome 2L, region 25F-26X, BAC clone BACR48E14, complete sequence Length = 166441 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 caccatcgacgacgactgc 33 ||||||||||||||||||| Sbjct: 155734 caccatcgacgacgactgc 155752
>gb|AC092216.1|AC092216 Drosophila melanogaster, chromosome 2L, region 25F-26A, BAC clone BACR10M11, complete sequence Length = 174832 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 caccatcgacgacgactgc 33 ||||||||||||||||||| Sbjct: 173058 caccatcgacgacgactgc 173040
>dbj|AK107760.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-133-A08, full insert sequence Length = 730 Score = 38.2 bits (19), Expect = 5.6 Identities = 24/26 (92%) Strand = Plus / Plus Query: 1 aagaagtacatntacaccatcgacga 26 |||||||| || |||||||||||||| Sbjct: 608 aagaagtatatctacaccatcgacga 633
>gb|AE003612.2| Drosophila melanogaster chromosome 2L, section 21 of 83 of the complete sequence Length = 260673 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 caccatcgacgacgactgc 33 ||||||||||||||||||| Sbjct: 21021 caccatcgacgacgactgc 21039
>gb|AC004758.1|AC004758 Drosophila melanogaster DNA sequence (P1s DS06106 (D123), DS05973 (D122), and DS08584 (D118)), complete sequence Length = 174311 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 caccatcgacgacgactgc 33 ||||||||||||||||||| Sbjct: 112770 caccatcgacgacgactgc 112752 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 930,242 Number of Sequences: 3902068 Number of extensions: 930242 Number of successful extensions: 65106 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64925 Number of HSP's gapped (non-prelim): 176 length of query: 122 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 101 effective length of database: 17,151,101,840 effective search space: 1732261285840 effective search space used: 1732261285840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)