| Clone Name | basd13h14 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK071068.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081K10, full insert sequence Length = 1529 Score = 170 bits (86), Expect = 4e-39 Identities = 312/386 (80%), Gaps = 1/386 (0%) Strand = Plus / Plus Query: 195 aatggttatcattctgcccaagaacatacgacacatgaactcagatattcaggaaatgat 254 |||||||||||||| ||||||||| ||| || |||| |||||||||||||| | ||| Sbjct: 655 aatggttatcattccacccaagaacgtacatcatgtgaattcagatattcaggagaagat 714 Query: 255 ttggaaggagcatccaaattgcaatgttcacgtggagaaagtgcatccgaaggagatcat 314 ||||||||||| |||| ||||||||| | || |||| ||||| |||||||||||| Sbjct: 715 gtggaaggagcagccaagcctcaatgttcatgcggggaaaatgcatgtgaaggagatcat 774 Query: 315 aatggtagcactttgtatagtttggatgctggtgattcgctaggtacgagccaccgttac 374 |||||||||| | || | |||||||| ||| |||||| |||||| || || | || | Sbjct: 775 aatggtagcagtatgcgtggtttggattctgatgattcaataggtaggaagcatcatttc 834 Query: 375 aagaacaaactgagcagtcagtaccgtggttttatgagaaacttatggtttacaaataga 434 | || |||||||||||| | |||| |||||||| | || |||||||||||||||||| Sbjct: 835 aggagcaaactgagcaggaaataccacagttttatgcggaatttatggtttacaaataga 894 Query: 435 gaccatgagagctttacaaagaggaggaaagatggagaagtagttgatggcttgagaaat 494 | | |||||| ||||||||||||||||||||||||||||| | ||| ||||||||||| Sbjct: 895 ggacgtgagagttttacaaagaggaggaaagatggagaagttatggatagcttgagaaat 954 Query: 495 ggcaatatattacctcccttcaaccctgcgtacatcaggaaggactatctattgctggcc 554 || | || ||||||| | ||||| || | | || | |||||| |||| |||| |||||| Sbjct: 955 ggaagtacattaccttcattcaa-tctacctccagctggaagggctatgtatttctggcc 1013 Query: 555 tgaacttatcaagagaacattaagta 580 ||| ||||||||||| | |||||||| Sbjct: 1014 tgagcttatcaagaggagattaagta 1039
>gb|AC137611.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0020H14, complete sequence Length = 185623 Score = 157 bits (79), Expect = 6e-35 Identities = 256/315 (81%) Strand = Plus / Minus Query: 195 aatggttatcattctgcccaagaacatacgacacatgaactcagatattcaggaaatgat 254 |||||||||||||| ||||||||| ||| || |||| |||||||||||||| | ||| Sbjct: 118621 aatggttatcattccacccaagaacgtacatcatgtgaattcagatattcaggagaagat 118562 Query: 255 ttggaaggagcatccaaattgcaatgttcacgtggagaaagtgcatccgaaggagatcat 314 ||||||||||| |||| ||||||||| | || |||| ||||| |||||||||||| Sbjct: 118561 gtggaaggagcagccaagcctcaatgttcatgcggggaaaatgcatgtgaaggagatcat 118502 Query: 315 aatggtagcactttgtatagtttggatgctggtgattcgctaggtacgagccaccgttac 374 |||||||||| | || | |||||||| ||| |||||| |||||| || || | || | Sbjct: 118501 aatggtagcagtatgcgtggtttggattctgatgattcaataggtaggaagcatcatttc 118442 Query: 375 aagaacaaactgagcagtcagtaccgtggttttatgagaaacttatggtttacaaataga 434 | || |||||||||||| | |||| |||||||| | || |||||||||||||||||| Sbjct: 118441 aggagcaaactgagcaggaaataccacagttttatgcggaatttatggtttacaaataga 118382 Query: 435 gaccatgagagctttacaaagaggaggaaagatggagaagtagttgatggcttgagaaat 494 | | |||||| ||||||||||||||||||||||||||||| | ||| ||||||||||| Sbjct: 118381 ggacgtgagagttttacaaagaggaggaaagatggagaagttatggatagcttgagaaat 118322 Query: 495 ggcaatatattacct 509 || | || ||||||| Sbjct: 118321 ggaagtacattacct 118307 Score = 44.1 bits (22), Expect = 0.57 Identities = 37/42 (88%) Strand = Plus / Minus Query: 539 ctatctattgctggcctgaacttatcaagagaacattaagta 580 |||| |||| ||||||||| ||||||||||| | |||||||| Sbjct: 118118 ctatgtatttctggcctgagcttatcaagaggagattaagta 118077
>gb|AC147462.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1110B01, complete sequence Length = 160142 Score = 157 bits (79), Expect = 6e-35 Identities = 256/315 (81%) Strand = Plus / Minus Query: 195 aatggttatcattctgcccaagaacatacgacacatgaactcagatattcaggaaatgat 254 |||||||||||||| ||||||||| ||| || |||| |||||||||||||| | ||| Sbjct: 157848 aatggttatcattccacccaagaacgtacatcatgtgaattcagatattcaggagaagat 157789 Query: 255 ttggaaggagcatccaaattgcaatgttcacgtggagaaagtgcatccgaaggagatcat 314 ||||||||||| |||| ||||||||| | || |||| ||||| |||||||||||| Sbjct: 157788 gtggaaggagcagccaagcctcaatgttcatgcggggaaaatgcatgtgaaggagatcat 157729 Query: 315 aatggtagcactttgtatagtttggatgctggtgattcgctaggtacgagccaccgttac 374 |||||||||| | || | |||||||| ||| |||||| |||||| || || | || | Sbjct: 157728 aatggtagcagtatgcgtggtttggattctgatgattcaataggtaggaagcatcatttc 157669 Query: 375 aagaacaaactgagcagtcagtaccgtggttttatgagaaacttatggtttacaaataga 434 | || |||||||||||| | |||| |||||||| | || |||||||||||||||||| Sbjct: 157668 aggagcaaactgagcaggaaataccacagttttatgcggaatttatggtttacaaataga 157609 Query: 435 gaccatgagagctttacaaagaggaggaaagatggagaagtagttgatggcttgagaaat 494 | | |||||| ||||||||||||||||||||||||||||| | ||| ||||||||||| Sbjct: 157608 ggacgtgagagttttacaaagaggaggaaagatggagaagttatggatagcttgagaaat 157549 Query: 495 ggcaatatattacct 509 || | || ||||||| Sbjct: 157548 ggaagtacattacct 157534 Score = 44.1 bits (22), Expect = 0.57 Identities = 37/42 (88%) Strand = Plus / Minus Query: 539 ctatctattgctggcctgaacttatcaagagaacattaagta 580 |||| |||| ||||||||| ||||||||||| | |||||||| Sbjct: 157345 ctatgtatttctggcctgagcttatcaagaggagattaagta 157304
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 157 bits (79), Expect = 6e-35 Identities = 256/315 (81%) Strand = Plus / Minus Query: 195 aatggttatcattctgcccaagaacatacgacacatgaactcagatattcaggaaatgat 254 |||||||||||||| ||||||||| ||| || |||| |||||||||||||| | ||| Sbjct: 21564765 aatggttatcattccacccaagaacgtacatcatgtgaattcagatattcaggagaagat 21564706 Query: 255 ttggaaggagcatccaaattgcaatgttcacgtggagaaagtgcatccgaaggagatcat 314 ||||||||||| |||| ||||||||| | || |||| ||||| |||||||||||| Sbjct: 21564705 gtggaaggagcagccaagcctcaatgttcatgcggggaaaatgcatgtgaaggagatcat 21564646 Query: 315 aatggtagcactttgtatagtttggatgctggtgattcgctaggtacgagccaccgttac 374 |||||||||| | || | |||||||| ||| |||||| |||||| || || | || | Sbjct: 21564645 aatggtagcagtatgcgtggtttggattctgatgattcaataggtaggaagcatcatttc 21564586 Query: 375 aagaacaaactgagcagtcagtaccgtggttttatgagaaacttatggtttacaaataga 434 | || |||||||||||| | |||| |||||||| | || |||||||||||||||||| Sbjct: 21564585 aggagcaaactgagcaggaaataccacagttttatgcggaatttatggtttacaaataga 21564526 Query: 435 gaccatgagagctttacaaagaggaggaaagatggagaagtagttgatggcttgagaaat 494 | | |||||| ||||||||||||||||||||||||||||| | ||| ||||||||||| Sbjct: 21564525 ggacgtgagagttttacaaagaggaggaaagatggagaagttatggatagcttgagaaat 21564466 Query: 495 ggcaatatattacct 509 || | || ||||||| Sbjct: 21564465 ggaagtacattacct 21564451 Score = 44.1 bits (22), Expect = 0.57 Identities = 37/42 (88%) Strand = Plus / Minus Query: 539 ctatctattgctggcctgaacttatcaagagaacattaagta 580 |||| |||| ||||||||| ||||||||||| | |||||||| Sbjct: 21564262 ctatgtatttctggcctgagcttatcaagaggagattaagta 21564221
>gb|AC020916.8| Homo sapiens chromosome 19 clone CTD-3252C9, complete sequence Length = 214530 Score = 48.1 bits (24), Expect = 0.037 Identities = 27/28 (96%) Strand = Plus / Minus Query: 91 ggctggcatctttcctttctggtggcaa 118 ||||||||||||||||| |||||||||| Sbjct: 110746 ggctggcatctttccttgctggtggcaa 110719
>emb|AL121755.23|HSDJ680N4 Human DNA sequence from clone RP4-680N4 on chromosome 20 Contains the 3' end of the CDS2 gene for CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2, the gene for a novel protein similar to ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast) (UBE2D3), the GPR73L1 gene for G protein-coupled receptor 73-like 1 (prokineticin receptor 2, PKR2, GPR73b) and a CpG island, complete sequence Length = 143892 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 203 tcattctgcccaagaacatac 223 ||||||||||||||||||||| Sbjct: 130599 tcattctgcccaagaacatac 130619
>emb|CR931743.1| Medicago truncatula chromosome 5 clone mth2-4c23, COMPLETE SEQUENCE Length = 109311 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 234 ctcagatattcaggaaatgat 254 ||||||||||||||||||||| Sbjct: 99381 ctcagatattcaggaaatgat 99401
>ref|NM_113703.1| Arabidopsis thaliana ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism AT3G27870 mRNA, complete cds Length = 3542 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 459 aggaaagatggagaagtagttgat 482 |||||||||||| ||||||||||| Sbjct: 3052 aggaaagatggacaagtagttgat 3075
>gb|AY691230.1| Clostridium cocleatum 60 kDa chaperonin (cpn60) gene, partial cds Length = 552 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 623 tagcaacatcattactagtt 642 |||||||||||||||||||| Sbjct: 163 tagcaacatcattactagtt 144
>gb|AC147263.3| Mus musculus BAC clone RP24-213I13 from chromosome 13, complete sequence Length = 182371 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 454 agaggaggaaagatggagaagtag 477 |||| ||||||||||||||||||| Sbjct: 41723 agagcaggaaagatggagaagtag 41700
>gb|AC146220.3| Pan troglodytes BAC clone RP43-27B14 from 7, complete sequence Length = 200195 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 gctggcatctttcctttctg 111 |||||||||||||||||||| Sbjct: 143138 gctggcatctttcctttctg 143157
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 422 gtttacaaatagagaccatgagag 445 ||||| |||||||||||||||||| Sbjct: 13912305 gtttataaatagagaccatgagag 13912282
>gb|AC123052.4| Mus musculus chromosome 13 clone RP24-373D10, complete sequence Length = 175595 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 agggaaagcttgaagactct 28 |||||||||||||||||||| Sbjct: 151620 agggaaagcttgaagactct 151639
>gb|AC122896.4| Mus musculus BAC clone RP23-69N8 from chromosome 10, complete sequence Length = 232473 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ctcaagtgaacaggatggag 87 |||||||||||||||||||| Sbjct: 164358 ctcaagtgaacaggatggag 164377
>gb|AC135907.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1057D12, from chromosome 3, complete sequence Length = 161676 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 422 gtttacaaatagagaccatgagag 445 ||||| |||||||||||||||||| Sbjct: 99177 gtttataaatagagaccatgagag 99200
>gb|AC098889.3| Mus musculus BAC clone RP23-122O10 from 10, complete sequence Length = 204770 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 ctttgtatagtttggatgct 344 |||||||||||||||||||| Sbjct: 109806 ctttgtatagtttggatgct 109825
>gb|AC142318.1| Pan troglodytes BAC clone RP43-55D2 from 7, complete sequence Length = 166749 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 gctggcatctttcctttctg 111 |||||||||||||||||||| Sbjct: 13798 gctggcatctttcctttctg 13817
>gb|AC157942.7| Mus musculus BAC clone RP24-118E2 from chromosome 13, complete sequence Length = 173717 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 agggaaagcttgaagactct 28 |||||||||||||||||||| Sbjct: 78220 agggaaagcttgaagactct 78239
>emb|Z82253.1|HSU151E3 Human DNA sequence from clone LL0XNC01-151E3 on chromosome X, complete sequence Length = 42246 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 444 agctttacaaagaggaggaaagat 467 |||||| ||||||||||||||||| Sbjct: 10524 agctttccaaagaggaggaaagat 10501
>emb|AL139083.15| Human DNA sequence from clone RP11-270C18 on chromosome 13 Contains the 3' end of the NBEA gene for neurobeachin (BCL8B FLJ10197 KIAA1544) and a novel gene, complete sequence Length = 162081 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 576 aagtagatctgaatattcta 595 |||||||||||||||||||| Sbjct: 127263 aagtagatctgaatattcta 127282
>gb|AC087889.15| Mus Musculus Strain C57BL6/J Chromosome 10 BAC, RP23-337L15, Complete Sequence, complete sequence Length = 215756 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ctcaagtgaacaggatggag 87 |||||||||||||||||||| Sbjct: 59716 ctcaagtgaacaggatggag 59735
>gb|AC027251.6| Homo sapiens chromosome 8, clone RP11-14G5, complete sequence Length = 130377 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 455 gaggaggaaagatggagaag 474 |||||||||||||||||||| Sbjct: 50209 gaggaggaaagatggagaag 50228
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 422 gtttacaaatagagaccatgagag 445 ||||| |||||||||||||||||| Sbjct: 13907280 gtttataaatagagaccatgagag 13907257
>gb|AC009019.10| Homo sapiens chromosome 16 clone RP11-101E7, complete sequence Length = 179785 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ctggcatctttcctttctgg 112 |||||||||||||||||||| Sbjct: 29220 ctggcatctttcctttctgg 29239
>gb|AC008266.3|AC008266 Homo sapiens PAC clone RP5-1145A24 from 7p11.2-p21, complete sequence Length = 177675 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 gctggcatctttcctttctg 111 |||||||||||||||||||| Sbjct: 48481 gctggcatctttcctttctg 48462
>gb|AC008496.6| Homo sapiens chromosome 5 clone CTC-431G16, complete sequence Length = 135434 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 454 agaggaggaaagatggagaa 473 |||||||||||||||||||| Sbjct: 30946 agaggaggaaagatggagaa 30927
>gb|AC007327.1|AC007327 Homo sapiens clone RP11-155G7 from 7p14-15, complete sequence Length = 169347 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 gctggcatctttcctttctg 111 |||||||||||||||||||| Sbjct: 128235 gctggcatctttcctttctg 128216
>dbj|AP000371.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone: K16N12 Length = 58864 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 459 aggaaagatggagaagtagttgat 482 |||||||||||| ||||||||||| Sbjct: 24974 aggaaagatggacaagtagttgat 24997
>emb|AL845292.4| Mouse DNA sequence from clone RP23-386I21 on chromosome 2, complete sequence Length = 186607 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 599 gctacagtcaccctcaactt 618 |||||||||||||||||||| Sbjct: 20429 gctacagtcaccctcaactt 20410
>gb|AC163685.4| Mus musculus BAC clone RP23-4M16 from chromosome 13, complete sequence Length = 242910 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 454 agaggaggaaagatggagaagtag 477 |||| ||||||||||||||||||| Sbjct: 200212 agagcaggaaagatggagaagtag 200189 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,158,536 Number of Sequences: 3902068 Number of extensions: 6158536 Number of successful extensions: 110915 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 110738 Number of HSP's gapped (non-prelim): 169 length of query: 654 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 631 effective length of database: 17,143,297,704 effective search space: 10817420851224 effective search space used: 10817420851224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)