ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd13h14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK071068.1| Oryza sativa (japonica cultivar-group) cDNA clon... 170 4e-39
2gb|AC137611.3| Oryza sativa (japonica cultivar-group) chromosome... 157 6e-35
3gb|AC147462.2| Oryza sativa (japonica cultivar-group) chromosome... 157 6e-35
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 157 6e-35
5gb|AC020916.8| Homo sapiens chromosome 19 clone CTD-3252C9, comp... 48 0.037
6emb|AL121755.23|HSDJ680N4 Human DNA sequence from clone RP4-680N... 42 2.3
7emb|CR931743.1| Medicago truncatula chromosome 5 clone mth2-4c23... 42 2.3
8ref|NM_113703.1| Arabidopsis thaliana ATPase, coupled to transme... 40 8.9
9gb|AY691230.1| Clostridium cocleatum 60 kDa chaperonin (cpn60) g... 40 8.9
10gb|AC147263.3| Mus musculus BAC clone RP24-213I13 from chromosom... 40 8.9
11gb|AC146220.3| Pan troglodytes BAC clone RP43-27B14 from 7, comp... 40 8.9
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 8.9
13gb|AC123052.4| Mus musculus chromosome 13 clone RP24-373D10, com... 40 8.9
14gb|AC122896.4| Mus musculus BAC clone RP23-69N8 from chromosome ... 40 8.9
15gb|AC135907.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 8.9
16gb|AC098889.3| Mus musculus BAC clone RP23-122O10 from 10, compl... 40 8.9
17gb|AC142318.1| Pan troglodytes BAC clone RP43-55D2 from 7, compl... 40 8.9
18gb|AC157942.7| Mus musculus BAC clone RP24-118E2 from chromosome... 40 8.9
19emb|Z82253.1|HSU151E3 Human DNA sequence from clone LL0XNC01-151... 40 8.9
20emb|AL139083.15| Human DNA sequence from clone RP11-270C18 on ch... 40 8.9
21gb|AC087889.15| Mus Musculus Strain C57BL6/J Chromosome 10 BAC, ... 40 8.9
22gb|AC027251.6| Homo sapiens chromosome 8, clone RP11-14G5, compl... 40 8.9
23dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
24gb|AC009019.10| Homo sapiens chromosome 16 clone RP11-101E7, com... 40 8.9
25gb|AC008266.3|AC008266 Homo sapiens PAC clone RP5-1145A24 from 7... 40 8.9
26gb|AC008496.6| Homo sapiens chromosome 5 clone CTC-431G16, compl... 40 8.9
27gb|AC007327.1|AC007327 Homo sapiens clone RP11-155G7 from 7p14-1... 40 8.9
28dbj|AP000371.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 8.9
29emb|AL845292.4| Mouse DNA sequence from clone RP23-386I21 on chr... 40 8.9
30gb|AC163685.4| Mus musculus BAC clone RP23-4M16 from chromosome ... 40 8.9

>dbj|AK071068.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081K10, full
            insert sequence
          Length = 1529

 Score =  170 bits (86), Expect = 4e-39
 Identities = 312/386 (80%), Gaps = 1/386 (0%)
 Strand = Plus / Plus

                                                                        
Query: 195  aatggttatcattctgcccaagaacatacgacacatgaactcagatattcaggaaatgat 254
            ||||||||||||||  ||||||||| |||  ||  |||| |||||||||||||| | |||
Sbjct: 655  aatggttatcattccacccaagaacgtacatcatgtgaattcagatattcaggagaagat 714

                                                                        
Query: 255  ttggaaggagcatccaaattgcaatgttcacgtggagaaagtgcatccgaaggagatcat 314
             ||||||||||| ||||    ||||||||| | || |||| |||||  ||||||||||||
Sbjct: 715  gtggaaggagcagccaagcctcaatgttcatgcggggaaaatgcatgtgaaggagatcat 774

                                                                        
Query: 315  aatggtagcactttgtatagtttggatgctggtgattcgctaggtacgagccaccgttac 374
            |||||||||| | ||  | |||||||| ||| ||||||  |||||| ||  || | || |
Sbjct: 775  aatggtagcagtatgcgtggtttggattctgatgattcaataggtaggaagcatcatttc 834

                                                                        
Query: 375  aagaacaaactgagcagtcagtaccgtggttttatgagaaacttatggtttacaaataga 434
            | || ||||||||||||  | ||||   |||||||| | || ||||||||||||||||||
Sbjct: 835  aggagcaaactgagcaggaaataccacagttttatgcggaatttatggtttacaaataga 894

                                                                        
Query: 435  gaccatgagagctttacaaagaggaggaaagatggagaagtagttgatggcttgagaaat 494
            |  | |||||| |||||||||||||||||||||||||||||  | ||| |||||||||||
Sbjct: 895  ggacgtgagagttttacaaagaggaggaaagatggagaagttatggatagcttgagaaat 954

                                                                        
Query: 495  ggcaatatattacctcccttcaaccctgcgtacatcaggaaggactatctattgctggcc 554
            || | || ||||||| | |||||  || | | || | |||||| |||| |||| ||||||
Sbjct: 955  ggaagtacattaccttcattcaa-tctacctccagctggaagggctatgtatttctggcc 1013

                                      
Query: 555  tgaacttatcaagagaacattaagta 580
            ||| ||||||||||| | ||||||||
Sbjct: 1014 tgagcttatcaagaggagattaagta 1039



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>gb|AC137611.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0020H14,
              complete sequence
          Length = 185623

 Score =  157 bits (79), Expect = 6e-35
 Identities = 256/315 (81%)
 Strand = Plus / Minus

                                                                          
Query: 195    aatggttatcattctgcccaagaacatacgacacatgaactcagatattcaggaaatgat 254
              ||||||||||||||  ||||||||| |||  ||  |||| |||||||||||||| | |||
Sbjct: 118621 aatggttatcattccacccaagaacgtacatcatgtgaattcagatattcaggagaagat 118562

                                                                          
Query: 255    ttggaaggagcatccaaattgcaatgttcacgtggagaaagtgcatccgaaggagatcat 314
               ||||||||||| ||||    ||||||||| | || |||| |||||  ||||||||||||
Sbjct: 118561 gtggaaggagcagccaagcctcaatgttcatgcggggaaaatgcatgtgaaggagatcat 118502

                                                                          
Query: 315    aatggtagcactttgtatagtttggatgctggtgattcgctaggtacgagccaccgttac 374
              |||||||||| | ||  | |||||||| ||| ||||||  |||||| ||  || | || |
Sbjct: 118501 aatggtagcagtatgcgtggtttggattctgatgattcaataggtaggaagcatcatttc 118442

                                                                          
Query: 375    aagaacaaactgagcagtcagtaccgtggttttatgagaaacttatggtttacaaataga 434
              | || ||||||||||||  | ||||   |||||||| | || ||||||||||||||||||
Sbjct: 118441 aggagcaaactgagcaggaaataccacagttttatgcggaatttatggtttacaaataga 118382

                                                                          
Query: 435    gaccatgagagctttacaaagaggaggaaagatggagaagtagttgatggcttgagaaat 494
              |  | |||||| |||||||||||||||||||||||||||||  | ||| |||||||||||
Sbjct: 118381 ggacgtgagagttttacaaagaggaggaaagatggagaagttatggatagcttgagaaat 118322

                             
Query: 495    ggcaatatattacct 509
              || | || |||||||
Sbjct: 118321 ggaagtacattacct 118307



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                        
Query: 539    ctatctattgctggcctgaacttatcaagagaacattaagta 580
              |||| |||| ||||||||| ||||||||||| | ||||||||
Sbjct: 118118 ctatgtatttctggcctgagcttatcaagaggagattaagta 118077



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>gb|AC147462.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1110B01,
              complete sequence
          Length = 160142

 Score =  157 bits (79), Expect = 6e-35
 Identities = 256/315 (81%)
 Strand = Plus / Minus

                                                                          
Query: 195    aatggttatcattctgcccaagaacatacgacacatgaactcagatattcaggaaatgat 254
              ||||||||||||||  ||||||||| |||  ||  |||| |||||||||||||| | |||
Sbjct: 157848 aatggttatcattccacccaagaacgtacatcatgtgaattcagatattcaggagaagat 157789

                                                                          
Query: 255    ttggaaggagcatccaaattgcaatgttcacgtggagaaagtgcatccgaaggagatcat 314
               ||||||||||| ||||    ||||||||| | || |||| |||||  ||||||||||||
Sbjct: 157788 gtggaaggagcagccaagcctcaatgttcatgcggggaaaatgcatgtgaaggagatcat 157729

                                                                          
Query: 315    aatggtagcactttgtatagtttggatgctggtgattcgctaggtacgagccaccgttac 374
              |||||||||| | ||  | |||||||| ||| ||||||  |||||| ||  || | || |
Sbjct: 157728 aatggtagcagtatgcgtggtttggattctgatgattcaataggtaggaagcatcatttc 157669

                                                                          
Query: 375    aagaacaaactgagcagtcagtaccgtggttttatgagaaacttatggtttacaaataga 434
              | || ||||||||||||  | ||||   |||||||| | || ||||||||||||||||||
Sbjct: 157668 aggagcaaactgagcaggaaataccacagttttatgcggaatttatggtttacaaataga 157609

                                                                          
Query: 435    gaccatgagagctttacaaagaggaggaaagatggagaagtagttgatggcttgagaaat 494
              |  | |||||| |||||||||||||||||||||||||||||  | ||| |||||||||||
Sbjct: 157608 ggacgtgagagttttacaaagaggaggaaagatggagaagttatggatagcttgagaaat 157549

                             
Query: 495    ggcaatatattacct 509
              || | || |||||||
Sbjct: 157548 ggaagtacattacct 157534



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                        
Query: 539    ctatctattgctggcctgaacttatcaagagaacattaagta 580
              |||| |||| ||||||||| ||||||||||| | ||||||||
Sbjct: 157345 ctatgtatttctggcctgagcttatcaagaggagattaagta 157304



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  157 bits (79), Expect = 6e-35
 Identities = 256/315 (81%)
 Strand = Plus / Minus

                                                                            
Query: 195      aatggttatcattctgcccaagaacatacgacacatgaactcagatattcaggaaatgat 254
                ||||||||||||||  ||||||||| |||  ||  |||| |||||||||||||| | |||
Sbjct: 21564765 aatggttatcattccacccaagaacgtacatcatgtgaattcagatattcaggagaagat 21564706

                                                                            
Query: 255      ttggaaggagcatccaaattgcaatgttcacgtggagaaagtgcatccgaaggagatcat 314
                 ||||||||||| ||||    ||||||||| | || |||| |||||  ||||||||||||
Sbjct: 21564705 gtggaaggagcagccaagcctcaatgttcatgcggggaaaatgcatgtgaaggagatcat 21564646

                                                                            
Query: 315      aatggtagcactttgtatagtttggatgctggtgattcgctaggtacgagccaccgttac 374
                |||||||||| | ||  | |||||||| ||| ||||||  |||||| ||  || | || |
Sbjct: 21564645 aatggtagcagtatgcgtggtttggattctgatgattcaataggtaggaagcatcatttc 21564586

                                                                            
Query: 375      aagaacaaactgagcagtcagtaccgtggttttatgagaaacttatggtttacaaataga 434
                | || ||||||||||||  | ||||   |||||||| | || ||||||||||||||||||
Sbjct: 21564585 aggagcaaactgagcaggaaataccacagttttatgcggaatttatggtttacaaataga 21564526

                                                                            
Query: 435      gaccatgagagctttacaaagaggaggaaagatggagaagtagttgatggcttgagaaat 494
                |  | |||||| |||||||||||||||||||||||||||||  | ||| |||||||||||
Sbjct: 21564525 ggacgtgagagttttacaaagaggaggaaagatggagaagttatggatagcttgagaaat 21564466

                               
Query: 495      ggcaatatattacct 509
                || | || |||||||
Sbjct: 21564465 ggaagtacattacct 21564451



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                          
Query: 539      ctatctattgctggcctgaacttatcaagagaacattaagta 580
                |||| |||| ||||||||| ||||||||||| | ||||||||
Sbjct: 21564262 ctatgtatttctggcctgagcttatcaagaggagattaagta 21564221



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>gb|AC020916.8| Homo sapiens chromosome 19 clone CTD-3252C9, complete sequence
          Length = 214530

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                          
Query: 91     ggctggcatctttcctttctggtggcaa 118
              ||||||||||||||||| ||||||||||
Sbjct: 110746 ggctggcatctttccttgctggtggcaa 110719



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>emb|AL121755.23|HSDJ680N4 Human DNA sequence from clone RP4-680N4 on chromosome 20 Contains the 3'
              end of the CDS2 gene for CDP-diacylglycerol synthase
              (phosphatidate cytidylyltransferase) 2, the gene for a
              novel protein similar to ubiquitin-conjugating enzyme E2D 3
              (UBC4/5 homolog, yeast) (UBE2D3), the GPR73L1 gene for G
              protein-coupled receptor 73-like 1 (prokineticin receptor
              2, PKR2, GPR73b) and a CpG island, complete sequence
          Length = 143892

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 203    tcattctgcccaagaacatac 223
              |||||||||||||||||||||
Sbjct: 130599 tcattctgcccaagaacatac 130619



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>emb|CR931743.1| Medicago truncatula chromosome 5 clone mth2-4c23, COMPLETE SEQUENCE
          Length = 109311

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 234   ctcagatattcaggaaatgat 254
             |||||||||||||||||||||
Sbjct: 99381 ctcagatattcaggaaatgat 99401



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>ref|NM_113703.1| Arabidopsis thaliana ATPase, coupled to transmembrane movement of
            ions, phosphorylative mechanism AT3G27870 mRNA, complete
            cds
          Length = 3542

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 459  aggaaagatggagaagtagttgat 482
            |||||||||||| |||||||||||
Sbjct: 3052 aggaaagatggacaagtagttgat 3075



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>gb|AY691230.1| Clostridium cocleatum 60 kDa chaperonin (cpn60) gene, partial cds
          Length = 552

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 623 tagcaacatcattactagtt 642
           ||||||||||||||||||||
Sbjct: 163 tagcaacatcattactagtt 144



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>gb|AC147263.3| Mus musculus BAC clone RP24-213I13 from chromosome 13, complete
             sequence
          Length = 182371

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 454   agaggaggaaagatggagaagtag 477
             |||| |||||||||||||||||||
Sbjct: 41723 agagcaggaaagatggagaagtag 41700



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>gb|AC146220.3| Pan troglodytes BAC clone RP43-27B14 from 7, complete sequence
          Length = 200195

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 92     gctggcatctttcctttctg 111
              ||||||||||||||||||||
Sbjct: 143138 gctggcatctttcctttctg 143157



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 422      gtttacaaatagagaccatgagag 445
                ||||| ||||||||||||||||||
Sbjct: 13912305 gtttataaatagagaccatgagag 13912282



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>gb|AC123052.4| Mus musculus chromosome 13 clone RP24-373D10, complete sequence
          Length = 175595

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 9      agggaaagcttgaagactct 28
              ||||||||||||||||||||
Sbjct: 151620 agggaaagcttgaagactct 151639



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>gb|AC122896.4| Mus musculus BAC clone RP23-69N8 from chromosome 10, complete sequence
          Length = 232473

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 68     ctcaagtgaacaggatggag 87
              ||||||||||||||||||||
Sbjct: 164358 ctcaagtgaacaggatggag 164377



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>gb|AC135907.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1057D12,
             from chromosome 3, complete sequence
          Length = 161676

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 422   gtttacaaatagagaccatgagag 445
             ||||| ||||||||||||||||||
Sbjct: 99177 gtttataaatagagaccatgagag 99200



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>gb|AC098889.3| Mus musculus BAC clone RP23-122O10 from 10, complete sequence
          Length = 204770

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 325    ctttgtatagtttggatgct 344
              ||||||||||||||||||||
Sbjct: 109806 ctttgtatagtttggatgct 109825



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>gb|AC142318.1| Pan troglodytes BAC clone RP43-55D2 from 7, complete sequence
          Length = 166749

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    gctggcatctttcctttctg 111
             ||||||||||||||||||||
Sbjct: 13798 gctggcatctttcctttctg 13817



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>gb|AC157942.7| Mus musculus BAC clone RP24-118E2 from chromosome 13, complete sequence
          Length = 173717

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     agggaaagcttgaagactct 28
             ||||||||||||||||||||
Sbjct: 78220 agggaaagcttgaagactct 78239



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>emb|Z82253.1|HSU151E3 Human DNA sequence from clone LL0XNC01-151E3 on chromosome X, complete
             sequence
          Length = 42246

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 444   agctttacaaagaggaggaaagat 467
             |||||| |||||||||||||||||
Sbjct: 10524 agctttccaaagaggaggaaagat 10501



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>emb|AL139083.15| Human DNA sequence from clone RP11-270C18 on chromosome 13 Contains the
              3' end of the NBEA gene for neurobeachin (BCL8B FLJ10197
              KIAA1544) and a novel gene, complete sequence
          Length = 162081

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 576    aagtagatctgaatattcta 595
              ||||||||||||||||||||
Sbjct: 127263 aagtagatctgaatattcta 127282



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>gb|AC087889.15| Mus Musculus Strain C57BL6/J Chromosome 10 BAC, RP23-337L15, Complete
             Sequence, complete sequence
          Length = 215756

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    ctcaagtgaacaggatggag 87
             ||||||||||||||||||||
Sbjct: 59716 ctcaagtgaacaggatggag 59735



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>gb|AC027251.6| Homo sapiens chromosome 8, clone RP11-14G5, complete sequence
          Length = 130377

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 455   gaggaggaaagatggagaag 474
             ||||||||||||||||||||
Sbjct: 50209 gaggaggaaagatggagaag 50228



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 422      gtttacaaatagagaccatgagag 445
                ||||| ||||||||||||||||||
Sbjct: 13907280 gtttataaatagagaccatgagag 13907257



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>gb|AC009019.10| Homo sapiens chromosome 16 clone RP11-101E7, complete sequence
          Length = 179785

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    ctggcatctttcctttctgg 112
             ||||||||||||||||||||
Sbjct: 29220 ctggcatctttcctttctgg 29239



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>gb|AC008266.3|AC008266 Homo sapiens PAC clone RP5-1145A24 from 7p11.2-p21, complete sequence
          Length = 177675

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    gctggcatctttcctttctg 111
             ||||||||||||||||||||
Sbjct: 48481 gctggcatctttcctttctg 48462



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>gb|AC008496.6| Homo sapiens chromosome 5 clone CTC-431G16, complete sequence
          Length = 135434

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 454   agaggaggaaagatggagaa 473
             ||||||||||||||||||||
Sbjct: 30946 agaggaggaaagatggagaa 30927



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>gb|AC007327.1|AC007327 Homo sapiens clone RP11-155G7 from 7p14-15, complete sequence
          Length = 169347

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 92     gctggcatctttcctttctg 111
              ||||||||||||||||||||
Sbjct: 128235 gctggcatctttcctttctg 128216



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>dbj|AP000371.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone: K16N12
          Length = 58864

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 459   aggaaagatggagaagtagttgat 482
             |||||||||||| |||||||||||
Sbjct: 24974 aggaaagatggacaagtagttgat 24997



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>emb|AL845292.4| Mouse DNA sequence from clone RP23-386I21 on chromosome 2, complete
             sequence
          Length = 186607

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 599   gctacagtcaccctcaactt 618
             ||||||||||||||||||||
Sbjct: 20429 gctacagtcaccctcaactt 20410



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>gb|AC163685.4| Mus musculus BAC clone RP23-4M16 from chromosome 13, complete sequence
          Length = 242910

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 454    agaggaggaaagatggagaagtag 477
              |||| |||||||||||||||||||
Sbjct: 200212 agagcaggaaagatggagaagtag 200189


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,158,536
Number of Sequences: 3902068
Number of extensions: 6158536
Number of successful extensions: 110915
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110738
Number of HSP's gapped (non-prelim): 169
length of query: 654
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 631
effective length of database: 17,143,297,704
effective search space: 10817420851224
effective search space used: 10817420851224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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