Clone Information

BLAST Search Result

Clone Name	basd13h13
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_481212.1\| Oryza sativa (japonica cultivar-group), mRNA	248	2e-62
2	ref\|XM_507576.1\| PREDICTED Oryza sativa (japonica cultivar-group...	248	2e-62
3	ref\|XM_507185.2\| PREDICTED Oryza sativa (japonica cultivar-group...	248	2e-62
4	dbj\|AK104325.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	248	2e-62
5	dbj\|AK068157.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	248	2e-62
6	dbj\|AK105984.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	240	5e-60
7	gb\|AY110166.1\| Zea mays CL13480_1 mRNA sequence	222	1e-54
8	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	159	1e-35
9	dbj\|AP004158.3\| Oryza sativa (japonica cultivar-group) genomic D...	159	1e-35
10	gb\|AE016825.1\| Chromobacterium violaceum ATCC 12472, complete ge...	46	0.14
11	gb\|CP000271.1\| Burkholderia xenovorans LB400 chromosome 2, compl...	44	0.57
12	gb\|CP000264.1\| Jannaschia sp. CCS1, complete genome	44	0.57
13	gb\|AC124006.4\| Mus musculus BAC clone RP24-528C3 from chromosome...	42	2.3
14	gb\|CP000090.1\| Ralstonia eutropha JMP134 chromosome 1, complete ...	42	2.3
15	gb\|AC122394.5\| Mus musculus BAC clone RP24-85N8 from 6, complete...	42	2.3
16	emb\|AL772131.5\| Mouse DNA sequence from clone RP23-472I13 on chr...	42	2.3
17	ref\|XM_880049.1\| PREDICTED: Bos taurus hypothetical protein LOC6...	40	8.9
18	ref\|XM_369659.1\| Magnaporthe grisea 70-15 chromosome III predict...	40	8.9
19	gb\|CP000115.1\| Nitrobacter winogradskyi Nb-255, complete genome	40	8.9
20	gb\|AC124753.3\| Mus musculus BAC clone RP23-284J4 from 9, complet...	40	8.9
21	ref\|XM_547144.2\| PREDICTED: Canis familiaris similar to bicaudal...	40	8.9
22	ref\|XM_859072.1\| PREDICTED: Canis familiaris similar to bicaudal...	40	8.9
23	gb\|AC146866.6\| Medicago truncatula clone mth2-19a14, complete se...	40	8.9
24	gb\|CP000283.1\| Rhodopseudomonas palustris BisB5, complete genome	40	8.9
25	emb\|AL161791.15\| Human DNA sequence from clone RP11-82L2 on chro...	40	8.9
26	emb\|AL138718.17\| Human DNA sequence from clone RP11-127P7 on chr...	40	8.9
27	gb\|AC157572.4\| Mus musculus BAC clone RP23-79O10 from chromosome...	40	8.9
28	gb\|AC127357.5\| Mus musculus BAC clone RP23-103P11 from chromosom...	40	8.9
29	emb\|AL162757.2\|NMA6Z2491 Neisseria meningitidis serogroup A stra...	40	8.9
30	gb\|AC159323.3\| Mus musculus BAC clone RP23-6I8 from chromosome 1...	40	8.9
31	gb\|AC016395.5\| Homo sapiens chromosome 10 clone RP11-153K11, com...	40	8.9
32	gb\|AC018452.11\| Homo sapiens chromosome 3 BAC RP11-23D24 (Roswel...	40	8.9
33	gb\|CP000249.1\| Frankia sp. CcI3, complete genome	40	8.9
34	gb\|AE002098.2\| Neisseria meningitidis MC58, complete genome	40	8.9
35	gb\|AC073120.5\| Homo sapiens BAC clone RP11-612D17 from 2, comple...	40	8.9
36	dbj\|BA000040.2\| Bradyrhizobium japonicum USDA 110 DNA, complete ...	40	8.9
37	dbj\|BA000012.4\| Mesorhizobium loti MAFF303099 DNA, complete genome	40	8.9
38	gb\|AE004969.1\| Neisseria gonorrhoeae FA 1090, complete genome	40	8.9
39	gb\|AC131658.3\| Mus musculus BAC clone RP23-239F24 from 3, comple...	40	8.9
40	emb\|CT009749.1\| Medicago truncatula chromosome 5 clone mth2-46e3...	40	8.9
41	emb\|AL627072.17\| Mouse DNA sequence from clone RP23-432B19 on ch...	40	8.9

>ref|XM_481212.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1702

 Score =  248 bits (125), Expect = 2e-62
 Identities = 248/289 (85%)
 Strand = Plus / Plus

                                                                        
Query: 300  ctgttcatcactactcctggacagctcacctgcctcatcaacgactctgccggcgtcgtg 359
            ||||||||||| |||||||| || ||||||||||||||||||||||| | ||||||||| 
Sbjct: 1151 ctgttcatcaccactcctggccaactcacctgcctcatcaacgactccgtcggcgtcgtc 1210

                                                                        
Query: 360  gcgaccaacaccgccgcggtccagctcgccaacgcccgcgacaagccatgtgtggcgctg 419
            ||||||||||||||||| |||||||||||||||||| | ||||||||||| ||||| || 
Sbjct: 1211 gcgaccaacaccgccgccgtccagctcgccaacgccagggacaagccatgcgtggctctc 1270

                                                                        
Query: 420  ttctcctccaaggagaaggcgaggctgttcctgccatacgtcgaggagaggaaaagctgc 479
            ||||| ||||||||||||||||||||||||||||| ||| | ||||||| |||  |||||
Sbjct: 1271 ttctcatccaaggagaaggcgaggctgttcctgccgtacttggaggagaagaagggctgc 1330

                                                                        
Query: 480  accgttgtcgcgtcggcgacaggcaagctggccggcattgacatcgaggcagtgaagaag 539
            ||||| |||||||||| ||| || ||||||  || ||| ||| ||||||| || ||||||
Sbjct: 1331 accgtcgtcgcgtcggagaccgggaagctgatcgacatcgacgtcgaggccgtcaagaag 1390

                                                             
Query: 540  gcagtcaaggacttggagcccgctcctagcttcgcattggcacaaacat 588
            || || ||||| ||  || |||| || ||| | |||||||| |||||||
Sbjct: 1391 gcggtgaaggagttcaaggccgccccaagcgttgcattggctcaaacat 1439



 Score =  200 bits (101), Expect = 4e-48
 Identities = 213/249 (85%), Gaps = 1/249 (0%)
 Strand = Plus / Plus

                                                                        
Query: 18   gggtgtccatctccaagnaagctgcgggcggtggtggaggacaagtacaaccgcgcgggc 77
            ||||||||||||||||| ||||| || ||| | ||||||||||| || | ||| || |||
Sbjct: 870  gggtgtccatctccaag-aagctccgagcgttcgtggaggacaaatatagccgtgccggc 928

                                                                        
Query: 78   gtggagaagggcaagtacgtcgtcatccacggcatagaatccgactccgtcgccaacatg 137
            || ||||||||||||| ||||||| |||||||||| |  ||||||||| |||||||||||
Sbjct: 929  gtcgagaagggcaagttcgtcgtcgtccacggcatcgcctccgactccttcgccaacatg 988

                                                                        
Query: 138  aagtccaggggagacgacgactgcctcctccccctcgaactgtgggcagagatcgccaag 197
            | ||| ||||| ||||| |||||||||||||| ||||| |  ||||| ||||||||||||
Sbjct: 989  aggtcgaggggggacgatgactgcctcctccctctcgagcattgggctgagatcgccaag 1048

                                                                        
Query: 198  gagatcagctccggaggcaatgggctgaggcctctgtttgtgatgccacatgagaggcac 257
            ||||||||||| | || |||||| |||| ||||||||||||||| || ||| ||| ||||
Sbjct: 1049 gagatcagctctgaagacaatggtctgaagcctctgtttgtgatccctcatcagaagcac 1108

                     
Query: 258  agagaagag 266
            || ||||||
Sbjct: 1109 agggaagag 1117

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>ref|XM_507576.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1118_F05.12 mRNA
          Length = 1751

 Score =  248 bits (125), Expect = 2e-62
 Identities = 248/289 (85%)
 Strand = Plus / Plus

                                                                        
Query: 300  ctgttcatcactactcctggacagctcacctgcctcatcaacgactctgccggcgtcgtg 359
            ||||||||||| |||||||| || ||||||||||||||||||||||| | ||||||||| 
Sbjct: 1151 ctgttcatcaccactcctggccaactcacctgcctcatcaacgactccgtcggcgtcgtc 1210

                                                                        
Query: 360  gcgaccaacaccgccgcggtccagctcgccaacgcccgcgacaagccatgtgtggcgctg 419
            ||||||||||||||||| |||||||||||||||||| | ||||||||||| ||||| || 
Sbjct: 1211 gcgaccaacaccgccgccgtccagctcgccaacgccagggacaagccatgcgtggctctc 1270

                                                                        
Query: 420  ttctcctccaaggagaaggcgaggctgttcctgccatacgtcgaggagaggaaaagctgc 479
            ||||| ||||||||||||||||||||||||||||| ||| | ||||||| |||  |||||
Sbjct: 1271 ttctcatccaaggagaaggcgaggctgttcctgccgtacttggaggagaagaagggctgc 1330

                                                                        
Query: 480  accgttgtcgcgtcggcgacaggcaagctggccggcattgacatcgaggcagtgaagaag 539
            ||||| |||||||||| ||| || ||||||  || ||| ||| ||||||| || ||||||
Sbjct: 1331 accgtcgtcgcgtcggagaccgggaagctgatcgacatcgacgtcgaggccgtcaagaag 1390

                                                             
Query: 540  gcagtcaaggacttggagcccgctcctagcttcgcattggcacaaacat 588
            || || ||||| ||  || |||| || ||| | |||||||| |||||||
Sbjct: 1391 gcggtgaaggagttcaaggccgccccaagcgttgcattggctcaaacat 1439



 Score =  200 bits (101), Expect = 4e-48
 Identities = 213/249 (85%), Gaps = 1/249 (0%)
 Strand = Plus / Plus

                                                                        
Query: 18   gggtgtccatctccaagnaagctgcgggcggtggtggaggacaagtacaaccgcgcgggc 77
            ||||||||||||||||| ||||| || ||| | ||||||||||| || | ||| || |||
Sbjct: 870  gggtgtccatctccaag-aagctccgagcgttcgtggaggacaaatatagccgtgccggc 928

                                                                        
Query: 78   gtggagaagggcaagtacgtcgtcatccacggcatagaatccgactccgtcgccaacatg 137
            || ||||||||||||| ||||||| |||||||||| |  ||||||||| |||||||||||
Sbjct: 929  gtcgagaagggcaagttcgtcgtcgtccacggcatcgcctccgactccttcgccaacatg 988

                                                                        
Query: 138  aagtccaggggagacgacgactgcctcctccccctcgaactgtgggcagagatcgccaag 197
            | ||| ||||| ||||| |||||||||||||| ||||| |  ||||| ||||||||||||
Sbjct: 989  aggtcgaggggggacgatgactgcctcctccctctcgagcattgggctgagatcgccaag 1048

                                                                        
Query: 198  gagatcagctccggaggcaatgggctgaggcctctgtttgtgatgccacatgagaggcac 257
            ||||||||||| | || |||||| |||| ||||||||||||||| || ||| ||| ||||
Sbjct: 1049 gagatcagctctgaagacaatggtctgaagcctctgtttgtgatccctcatcagaagcac 1108

                     
Query: 258  agagaagag 266
            || ||||||
Sbjct: 1109 agggaagag 1117

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>ref|XM_507185.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1118_F05.12 mRNA
          Length = 1710

 Score =  248 bits (125), Expect = 2e-62
 Identities = 248/289 (85%)
 Strand = Plus / Plus

                                                                        
Query: 300  ctgttcatcactactcctggacagctcacctgcctcatcaacgactctgccggcgtcgtg 359
            ||||||||||| |||||||| || ||||||||||||||||||||||| | ||||||||| 
Sbjct: 1155 ctgttcatcaccactcctggccaactcacctgcctcatcaacgactccgtcggcgtcgtc 1214

                                                                        
Query: 360  gcgaccaacaccgccgcggtccagctcgccaacgcccgcgacaagccatgtgtggcgctg 419
            ||||||||||||||||| |||||||||||||||||| | ||||||||||| ||||| || 
Sbjct: 1215 gcgaccaacaccgccgccgtccagctcgccaacgccagggacaagccatgcgtggctctc 1274

                                                                        
Query: 420  ttctcctccaaggagaaggcgaggctgttcctgccatacgtcgaggagaggaaaagctgc 479
            ||||| ||||||||||||||||||||||||||||| ||| | ||||||| |||  |||||
Sbjct: 1275 ttctcatccaaggagaaggcgaggctgttcctgccgtacttggaggagaagaagggctgc 1334

                                                                        
Query: 480  accgttgtcgcgtcggcgacaggcaagctggccggcattgacatcgaggcagtgaagaag 539
            ||||| |||||||||| ||| || ||||||  || ||| ||| ||||||| || ||||||
Sbjct: 1335 accgtcgtcgcgtcggagaccgggaagctgatcgacatcgacgtcgaggccgtcaagaag 1394

                                                             
Query: 540  gcagtcaaggacttggagcccgctcctagcttcgcattggcacaaacat 588
            || || ||||| ||  || |||| || ||| | |||||||| |||||||
Sbjct: 1395 gcggtgaaggagttcaaggccgccccaagcgttgcattggctcaaacat 1443



 Score =  200 bits (101), Expect = 4e-48
 Identities = 213/249 (85%), Gaps = 1/249 (0%)
 Strand = Plus / Plus

                                                                        
Query: 18   gggtgtccatctccaagnaagctgcgggcggtggtggaggacaagtacaaccgcgcgggc 77
            ||||||||||||||||| ||||| || ||| | ||||||||||| || | ||| || |||
Sbjct: 874  gggtgtccatctccaag-aagctccgagcgttcgtggaggacaaatatagccgtgccggc 932

                                                                        
Query: 78   gtggagaagggcaagtacgtcgtcatccacggcatagaatccgactccgtcgccaacatg 137
            || ||||||||||||| ||||||| |||||||||| |  ||||||||| |||||||||||
Sbjct: 933  gtcgagaagggcaagttcgtcgtcgtccacggcatcgcctccgactccttcgccaacatg 992

                                                                        
Query: 138  aagtccaggggagacgacgactgcctcctccccctcgaactgtgggcagagatcgccaag 197
            | ||| ||||| ||||| |||||||||||||| ||||| |  ||||| ||||||||||||
Sbjct: 993  aggtcgaggggggacgatgactgcctcctccctctcgagcattgggctgagatcgccaag 1052

                                                                        
Query: 198  gagatcagctccggaggcaatgggctgaggcctctgtttgtgatgccacatgagaggcac 257
            ||||||||||| | || |||||| |||| ||||||||||||||| || ||| ||| ||||
Sbjct: 1053 gagatcagctctgaagacaatggtctgaagcctctgtttgtgatccctcatcagaagcac 1112

                     
Query: 258  agagaagag 266
            || ||||||
Sbjct: 1113 agggaagag 1121

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>dbj|AK104325.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-H10, full
            insert sequence
          Length = 1702

 Score =  248 bits (125), Expect = 2e-62
 Identities = 248/289 (85%)
 Strand = Plus / Plus

                                                                        
Query: 300  ctgttcatcactactcctggacagctcacctgcctcatcaacgactctgccggcgtcgtg 359
            ||||||||||| |||||||| || ||||||||||||||||||||||| | ||||||||| 
Sbjct: 1151 ctgttcatcaccactcctggccaactcacctgcctcatcaacgactccgtcggcgtcgtc 1210

                                                                        
Query: 360  gcgaccaacaccgccgcggtccagctcgccaacgcccgcgacaagccatgtgtggcgctg 419
            ||||||||||||||||| |||||||||||||||||| | ||||||||||| ||||| || 
Sbjct: 1211 gcgaccaacaccgccgccgtccagctcgccaacgccagggacaagccatgcgtggctctc 1270

                                                                        
Query: 420  ttctcctccaaggagaaggcgaggctgttcctgccatacgtcgaggagaggaaaagctgc 479
            ||||| ||||||||||||||||||||||||||||| ||| | ||||||| |||  |||||
Sbjct: 1271 ttctcatccaaggagaaggcgaggctgttcctgccgtacttggaggagaagaagggctgc 1330

                                                                        
Query: 480  accgttgtcgcgtcggcgacaggcaagctggccggcattgacatcgaggcagtgaagaag 539
            ||||| |||||||||| ||| || ||||||  || ||| ||| ||||||| || ||||||
Sbjct: 1331 accgtcgtcgcgtcggagaccgggaagctgatcgacatcgacgtcgaggccgtcaagaag 1390

                                                             
Query: 540  gcagtcaaggacttggagcccgctcctagcttcgcattggcacaaacat 588
            || || ||||| ||  || |||| || ||| | |||||||| |||||||
Sbjct: 1391 gcggtgaaggagttcaaggccgccccaagcgttgcattggctcaaacat 1439



 Score =  200 bits (101), Expect = 4e-48
 Identities = 213/249 (85%), Gaps = 1/249 (0%)
 Strand = Plus / Plus

                                                                        
Query: 18   gggtgtccatctccaagnaagctgcgggcggtggtggaggacaagtacaaccgcgcgggc 77
            ||||||||||||||||| ||||| || ||| | ||||||||||| || | ||| || |||
Sbjct: 870  gggtgtccatctccaag-aagctccgagcgttcgtggaggacaaatatagccgtgccggc 928

                                                                        
Query: 78   gtggagaagggcaagtacgtcgtcatccacggcatagaatccgactccgtcgccaacatg 137
            || ||||||||||||| ||||||| |||||||||| |  ||||||||| |||||||||||
Sbjct: 929  gtcgagaagggcaagttcgtcgtcgtccacggcatcgcctccgactccttcgccaacatg 988

                                                                        
Query: 138  aagtccaggggagacgacgactgcctcctccccctcgaactgtgggcagagatcgccaag 197
            | ||| ||||| ||||| |||||||||||||| ||||| |  ||||| ||||||||||||
Sbjct: 989  aggtcgaggggggacgatgactgcctcctccctctcgagcattgggctgagatcgccaag 1048

                                                                        
Query: 198  gagatcagctccggaggcaatgggctgaggcctctgtttgtgatgccacatgagaggcac 257
            ||||||||||| | || |||||| |||| ||||||||||||||| || ||| ||| ||||
Sbjct: 1049 gagatcagctctgaagacaatggtctgaagcctctgtttgtgatccctcatcagaagcac 1108

                     
Query: 258  agagaagag 266
            || ||||||
Sbjct: 1109 agggaagag 1117

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>dbj|AK068157.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134G12, full
            insert sequence
          Length = 1710

 Score =  248 bits (125), Expect = 2e-62
 Identities = 248/289 (85%)
 Strand = Plus / Plus

                                                                        
Query: 300  ctgttcatcactactcctggacagctcacctgcctcatcaacgactctgccggcgtcgtg 359
            ||||||||||| |||||||| || ||||||||||||||||||||||| | ||||||||| 
Sbjct: 1155 ctgttcatcaccactcctggccaactcacctgcctcatcaacgactccgtcggcgtcgtc 1214

                                                                        
Query: 360  gcgaccaacaccgccgcggtccagctcgccaacgcccgcgacaagccatgtgtggcgctg 419
            ||||||||||||||||| |||||||||||||||||| | |||| |||||| ||||| || 
Sbjct: 1215 gcgaccaacaccgccgccgtccagctcgccaacgccagggacaggccatgcgtggctctc 1274

                                                                        
Query: 420  ttctcctccaaggagaaggcgaggctgttcctgccatacgtcgaggagaggaaaagctgc 479
            ||||| ||||||||||||||||||||||||||||| ||| | |||||||||||  |||||
Sbjct: 1275 ttctcatccaaggagaaggcgaggctgttcctgccgtacttggaggagaggaagggctgc 1334

                                                                        
Query: 480  accgttgtcgcgtcggcgacaggcaagctggccggcattgacatcgaggcagtgaagaag 539
            ||||| |||||||||| ||| || ||||||  || ||| ||| ||||||| || ||||||
Sbjct: 1335 accgtcgtcgcgtcggagaccgggaagctgatcgacatcgacgtcgaggccgtcaagaag 1394

                                                             
Query: 540  gcagtcaaggacttggagcccgctcctagcttcgcattggcacaaacat 588
            || || ||||| ||  || |||| || ||| | |||||||| |||||||
Sbjct: 1395 gcggtgaaggagttcaaggccgccccaagcgttgcattggctcaaacat 1443



 Score =  200 bits (101), Expect = 4e-48
 Identities = 213/249 (85%), Gaps = 1/249 (0%)
 Strand = Plus / Plus

                                                                        
Query: 18   gggtgtccatctccaagnaagctgcgggcggtggtggaggacaagtacaaccgcgcgggc 77
            ||||||||||||||||| ||||| || ||| | ||||||||||| || | ||| || |||
Sbjct: 874  gggtgtccatctccaag-aagctccgagcgttcgtggaggacaaatatagccgtgccggc 932

                                                                        
Query: 78   gtggagaagggcaagtacgtcgtcatccacggcatagaatccgactccgtcgccaacatg 137
            || ||||||||||||| ||||||| |||||||||| |  ||||||||| |||||||||||
Sbjct: 933  gtcgagaagggcaagttcgtcgtcgtccacggcatcgcctccgactccttcgccaacatg 992

                                                                        
Query: 138  aagtccaggggagacgacgactgcctcctccccctcgaactgtgggcagagatcgccaag 197
            | ||| ||||| ||||| |||||||||||||| ||||| |  ||||| ||||||||||||
Sbjct: 993  aggtcgaggggggacgatgactgcctcctccctctcgagcattgggctgagatcgccaag 1052

                                                                        
Query: 198  gagatcagctccggaggcaatgggctgaggcctctgtttgtgatgccacatgagaggcac 257
            ||||||||||| | || |||||| |||| ||||||||||||||| || ||| ||| ||||
Sbjct: 1053 gagatcagctctgaagacaatggtctgaagcctctgtttgtgatccctcatcagaagcac 1112

                     
Query: 258  agagaagag 266
            || ||||||
Sbjct: 1113 agggaagag 1121

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>dbj|AK105984.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-G04, full
            insert sequence
          Length = 1751

 Score =  240 bits (121), Expect = 5e-60
 Identities = 247/289 (85%)
 Strand = Plus / Plus

                                                                        
Query: 300  ctgttcatcactactcctggacagctcacctgcctcatcaacgactctgccggcgtcgtg 359
            ||||||||||| |||||||| || |||||||||| |||||||||||| | ||||||||| 
Sbjct: 1151 ctgttcatcaccactcctggccaactcacctgccccatcaacgactccgtcggcgtcgtc 1210

                                                                        
Query: 360  gcgaccaacaccgccgcggtccagctcgccaacgcccgcgacaagccatgtgtggcgctg 419
            ||||||||||||||||| |||||||||||||||||| | ||||||||||| ||||| || 
Sbjct: 1211 gcgaccaacaccgccgccgtccagctcgccaacgccagggacaagccatgcgtggctctc 1270

                                                                        
Query: 420  ttctcctccaaggagaaggcgaggctgttcctgccatacgtcgaggagaggaaaagctgc 479
            ||||| ||||||||||||||||||||||||||||| ||| | ||||||| |||  |||||
Sbjct: 1271 ttctcatccaaggagaaggcgaggctgttcctgccgtacttggaggagaagaagggctgc 1330

                                                                        
Query: 480  accgttgtcgcgtcggcgacaggcaagctggccggcattgacatcgaggcagtgaagaag 539
            ||||| |||||||||| ||| || ||||||  || ||| ||| ||||||| || ||||||
Sbjct: 1331 accgtcgtcgcgtcggagaccgggaagctgatcgacatcgacgtcgaggccgtcaagaag 1390

                                                             
Query: 540  gcagtcaaggacttggagcccgctcctagcttcgcattggcacaaacat 588
            || || ||||| ||  || |||| || ||| | |||||||| |||||||
Sbjct: 1391 gcggtgaaggagttcaaggccgccccaagcgttgcattggctcaaacat 1439



 Score =  200 bits (101), Expect = 4e-48
 Identities = 213/249 (85%), Gaps = 1/249 (0%)
 Strand = Plus / Plus

                                                                        
Query: 18   gggtgtccatctccaagnaagctgcgggcggtggtggaggacaagtacaaccgcgcgggc 77
            ||||||||||||||||| ||||| || ||| | ||||||||||| || | ||| || |||
Sbjct: 870  gggtgtccatctccaag-aagctccgagcgttcgtggaggacaaatatagccgtgccggc 928

                                                                        
Query: 78   gtggagaagggcaagtacgtcgtcatccacggcatagaatccgactccgtcgccaacatg 137
            || ||||||||||||| ||||||| |||||||||| |  ||||||||| |||||||||||
Sbjct: 929  gtcgagaagggcaagttcgtcgtcgtccacggcatcgcctccgactccttcgccaacatg 988

                                                                        
Query: 138  aagtccaggggagacgacgactgcctcctccccctcgaactgtgggcagagatcgccaag 197
            | ||| ||||| ||||| |||||||||||||| ||||| |  ||||| ||||||||||||
Sbjct: 989  aggtcgaggggggacgatgactgcctcctccctctcgagcattgggctgagatcgccaag 1048

                                                                        
Query: 198  gagatcagctccggaggcaatgggctgaggcctctgtttgtgatgccacatgagaggcac 257
            ||||||||||| | || |||||| |||| ||||||||||||||| || ||| ||| ||||
Sbjct: 1049 gagatcagctctgaagacaatggtctgaagcctctgtttgtgatccctcatcagaagcac 1108

                     
Query: 258  agagaagag 266
            || ||||||
Sbjct: 1109 agggaagag 1117

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>gb|AY110166.1| Zea mays CL13480_1 mRNA sequence
          Length = 1343

 Score =  222 bits (112), Expect = 1e-54
 Identities = 241/284 (84%)
 Strand = Plus / Minus

                                                                       
Query: 300 ctgttcatcactactcctggacagctcacctgcctcatcaacgactctgccggcgtcgtg 359
           ||||||||||| || || || |||||||||||||||||||||||||||||||||||||| 
Sbjct: 493 ctgttcatcaccaccccaggccagctcacctgcctcatcaacgactctgccggcgtcgtc 434

                                                                       
Query: 360 gcgaccaacaccgccgcggtccagctcgccaacgcccgcgacaagccatgtgtggcgctg 419
           |||||||| ||||| || || |||||||||||||||||||||||||||||||||||| ||
Sbjct: 433 gcgaccaataccgctgccgtgcagctcgccaacgcccgcgacaagccatgtgtggcgttg 374

                                                                       
Query: 420 ttctcctccaaggagaaggcgaggctgttcctgccatacgtcgaggagaggaaaagctgc 479
           ||||| ||    |||||||| |||||||||||||||||||| ||||  | ||  ||||||
Sbjct: 373 ttctcgtcggcagagaaggcaaggctgttcctgccatacgtggagggcaagagcagctgc 314

                                                                       
Query: 480 accgttgtcgcgtcggcgacaggcaagctggccggcattgacatcgaggcagtgaagaag 539
           |||||  |  | |||||||| || || |||  || ||| ||| || | || |||||||| 
Sbjct: 313 accgtcatatcttcggcgacggggaacctgatcgacatcgacctcaacgcggtgaagaat 254

                                                       
Query: 540 gcagtcaaggacttggagcccgctcctagcttcgcattggcaca 583
           |  || |||||||||||||||||||| |||||||||||||||||
Sbjct: 253 gtggtgaaggacttggagcccgctcccagcttcgcattggcaca 210



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 68/76 (89%), Gaps = 1/76 (1%)
 Strand = Plus / Minus

                                                                       
Query: 18  gggtgtccatctccaagnaagctgcgggcggtggtggaggacaagtacaaccgcgcgggc 77
           ||||||||||||||||| ||||| ||||||   |||||||||||||| | |||||| |||
Sbjct: 774 gggtgtccatctccaag-aagctacgggcgtacgtggaggacaagtatagccgcgccggc 716

                           
Query: 78  gtggagaagggcaagt 93
           ||||||||||||||||
Sbjct: 715 gtggagaagggcaagt 700

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  159 bits (80), Expect = 1e-35
 Identities = 162/188 (86%), Gaps = 1/188 (0%)
 Strand = Plus / Plus

                                                                            
Query: 18       gggtgtccatctccaagnaagctgcgggcggtggtggaggacaagtacaaccgcgcgggc 77
                ||||||||||||||||| ||||| || ||| | ||||||||||| || | ||| || |||
Sbjct: 10626115 gggtgtccatctccaag-aagctccgagcgttcgtggaggacaaatatagccgtgccggc 10626173

                                                                            
Query: 78       gtggagaagggcaagtacgtcgtcatccacggcatagaatccgactccgtcgccaacatg 137
                || ||||||||||||| ||||||| |||||||||| |  ||||||||| |||||||||||
Sbjct: 10626174 gtcgagaagggcaagttcgtcgtcgtccacggcatcgcctccgactccttcgccaacatg 10626233

                                                                            
Query: 138      aagtccaggggagacgacgactgcctcctccccctcgaactgtgggcagagatcgccaag 197
                | ||| ||||| ||||| |||||||||||||| ||||| |  ||||| ||||||||||||
Sbjct: 10626234 aggtcgaggggggacgatgactgcctcctccctctcgagcattgggctgagatcgccaag 10626293

                        
Query: 198      gagatcag 205
                ||||||||
Sbjct: 10626294 gagatcag 10626301



 Score =  127 bits (64), Expect = 5e-26
 Identities = 82/88 (93%)
 Strand = Plus / Plus

                                                                            
Query: 322      agctcacctgcctcatcaacgactctgccggcgtcgtggcgaccaacaccgccgcggtcc 381
                ||||||||||||||||||||||||| | ||||||||| ||||||||||||||||| ||||
Sbjct: 10626662 agctcacctgcctcatcaacgactccgtcggcgtcgtcgcgaccaacaccgccgccgtcc 10626721

                                            
Query: 382      agctcgccaacgcccgcgacaagccatg 409
                |||||||||||||| | |||||||||||
Sbjct: 10626722 agctcgccaacgccagggacaagccatg 10626749



 Score =  107 bits (54), Expect = 5e-20
 Identities = 147/178 (82%)
 Strand = Plus / Plus

                                                                            
Query: 411      gtggcgctgttctcctccaaggagaaggcgaggctgttcctgccatacgtcgaggagagg 470
                ||||| || ||||| ||||||||||||||||||||||||||||| ||| | ||||||| |
Sbjct: 10626854 gtggctctcttctcatccaaggagaaggcgaggctgttcctgccgtacttggaggagaag 10626913

                                                                            
Query: 471      aaaagctgcaccgttgtcgcgtcggcgacaggcaagctggccggcattgacatcgaggca 530
                ||  |||||||||| |||||||||| ||| || ||||||  || ||| ||| ||||||| 
Sbjct: 10626914 aagggctgcaccgtcgtcgcgtcggagaccgggaagctgatcgacatcgacgtcgaggcc 10626973

                                                                          
Query: 531      gtgaagaaggcagtcaaggacttggagcccgctcctagcttcgcattggcacaaacat 588
                || |||||||| || ||||| ||  || |||| || ||| | |||||||| |||||||
Sbjct: 10626974 gtcaagaaggcggtgaaggagttcaaggccgccccaagcgttgcattggctcaaacat 10627031



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                    
Query: 215      caatgggctgaggcctctgtttgtgatgccacatgagaggcacagagaagag 266
                |||||| |||| ||||||||||||||| || ||| ||| |||||| ||||||
Sbjct: 10626431 caatggtctgaagcctctgtttgtgatccctcatcagaagcacagggaagag 10626482

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>dbj|AP004158.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1118_F05
          Length = 134247

 Score =  159 bits (80), Expect = 1e-35
 Identities = 162/188 (86%), Gaps = 1/188 (0%)
 Strand = Plus / Plus

                                                                         
Query: 18    gggtgtccatctccaagnaagctgcgggcggtggtggaggacaagtacaaccgcgcgggc 77
             ||||||||||||||||| ||||| || ||| | ||||||||||| || | ||| || |||
Sbjct: 53755 gggtgtccatctccaag-aagctccgagcgttcgtggaggacaaatatagccgtgccggc 53813

                                                                         
Query: 78    gtggagaagggcaagtacgtcgtcatccacggcatagaatccgactccgtcgccaacatg 137
             || ||||||||||||| ||||||| |||||||||| |  ||||||||| |||||||||||
Sbjct: 53814 gtcgagaagggcaagttcgtcgtcgtccacggcatcgcctccgactccttcgccaacatg 53873

                                                                         
Query: 138   aagtccaggggagacgacgactgcctcctccccctcgaactgtgggcagagatcgccaag 197
             | ||| ||||| ||||| |||||||||||||| ||||| |  ||||| ||||||||||||
Sbjct: 53874 aggtcgaggggggacgatgactgcctcctccctctcgagcattgggctgagatcgccaag 53933

                     
Query: 198   gagatcag 205
             ||||||||
Sbjct: 53934 gagatcag 53941



 Score =  127 bits (64), Expect = 5e-26
 Identities = 82/88 (93%)
 Strand = Plus / Plus

                                                                         
Query: 322   agctcacctgcctcatcaacgactctgccggcgtcgtggcgaccaacaccgccgcggtcc 381
             ||||||||||||||||||||||||| | ||||||||| ||||||||||||||||| ||||
Sbjct: 54302 agctcacctgcctcatcaacgactccgtcggcgtcgtcgcgaccaacaccgccgccgtcc 54361

                                         
Query: 382   agctcgccaacgcccgcgacaagccatg 409
             |||||||||||||| | |||||||||||
Sbjct: 54362 agctcgccaacgccagggacaagccatg 54389



 Score =  107 bits (54), Expect = 5e-20
 Identities = 147/178 (82%)
 Strand = Plus / Plus

                                                                         
Query: 411   gtggcgctgttctcctccaaggagaaggcgaggctgttcctgccatacgtcgaggagagg 470
             ||||| || ||||| ||||||||||||||||||||||||||||| ||| | ||||||| |
Sbjct: 54494 gtggctctcttctcatccaaggagaaggcgaggctgttcctgccgtacttggaggagaag 54553

                                                                         
Query: 471   aaaagctgcaccgttgtcgcgtcggcgacaggcaagctggccggcattgacatcgaggca 530
             ||  |||||||||| |||||||||| ||| || ||||||  || ||| ||| ||||||| 
Sbjct: 54554 aagggctgcaccgtcgtcgcgtcggagaccgggaagctgatcgacatcgacgtcgaggcc 54613

                                                                       
Query: 531   gtgaagaaggcagtcaaggacttggagcccgctcctagcttcgcattggcacaaacat 588
             || |||||||| || ||||| ||  || |||| || ||| | |||||||| |||||||
Sbjct: 54614 gtcaagaaggcggtgaaggagttcaaggccgccccaagcgttgcattggctcaaacat 54671



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                 
Query: 215   caatgggctgaggcctctgtttgtgatgccacatgagaggcacagagaagag 266
             |||||| |||| ||||||||||||||| || ||| ||| |||||| ||||||
Sbjct: 54071 caatggtctgaagcctctgtttgtgatccctcatcagaagcacagggaagag 54122

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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                              
Query: 265     agatcgaggaaatcgtcggtgaggagacggc 295
               |||||||||| |||||||| |||||||||||
Sbjct: 4100260 agatcgaggacatcgtcggcgaggagacggc 4100230

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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 62      gtacaaccgcgcgggcgtggag 83
               ||||||||||||||||||||||
Sbjct: 2671987 gtacaaccgcgcgggcgtggag 2671966

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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 62      gtacaaccgcgcgggcgtggag 83
               ||||||||||||||||||||||
Sbjct: 1834276 gtacaaccgcgcgggcgtggag 1834297

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>gb|AC124006.4| Mus musculus BAC clone RP24-528C3 from chromosome 6, complete sequence
          Length = 146418

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 312   actcctggacagctcacctgcctca 336
             ||||||||||||||||| |||||||
Sbjct: 92275 actcctggacagctcacatgcctca 92251

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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 62      gtacaaccgcgcgggcgtgga 82
               |||||||||||||||||||||
Sbjct: 1207061 gtacaaccgcgcgggcgtgga 1207041

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>gb|AC122394.5| Mus musculus BAC clone RP24-85N8 from 6, complete sequence
          Length = 215914

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 312   actcctggacagctcacctgcctca 336
             ||||||||||||||||| |||||||
Sbjct: 27660 actcctggacagctcacatgcctca 27636

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>emb|AL772131.5| Mouse DNA sequence from clone RP23-472I13 on chromosome 4, complete
              sequence
          Length = 179035

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 316    ctggacagctcacctgcctcatcaa 340
              |||||||||||| ||||||||||||
Sbjct: 111056 ctggacagctcagctgcctcatcaa 111080

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>ref|XM_880049.1| PREDICTED: Bos taurus hypothetical protein LOC615502 (LOC615502),
           mRNA
          Length = 936

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 316 ctggacagctcacctgcctc 335
           ||||||||||||||||||||
Sbjct: 97  ctggacagctcacctgcctc 78

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>ref|XM_369659.1| Magnaporthe grisea 70-15 chromosome III predicted protein
           (MG05805.4) partial mRNA
          Length = 738

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 368 caccgccgcggtccagctcg 387
           ||||||||||||||||||||
Sbjct: 48  caccgccgcggtccagctcg 67

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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 374    cgcggtccagctcgccaacg 393
              ||||||||||||||||||||
Sbjct: 619232 cgcggtccagctcgccaacg 619213

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>gb|AC124753.3| Mus musculus BAC clone RP23-284J4 from 9, complete sequence
          Length = 177378

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 260   agaagagatcgaggaaatcg 279
             ||||||||||||||||||||
Sbjct: 65578 agaagagatcgaggaaatcg 65597

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>ref|XM_547144.2| PREDICTED: Canis familiaris similar to bicaudal-C, transcript variant
            1 (LOC490024), mRNA
          Length = 1858

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 37   agctgcgggcggtggtggag 56
            ||||||||||||||||||||
Sbjct: 1422 agctgcgggcggtggtggag 1441

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>ref|XM_859072.1| PREDICTED: Canis familiaris similar to bicaudal-C, transcript
           variant 2 (LOC490024), mRNA
          Length = 929

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 37  agctgcgggcggtggtggag 56
           ||||||||||||||||||||
Sbjct: 493 agctgcgggcggtggtggag 512

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>gb|AC146866.6| Medicago truncatula clone mth2-19a14, complete sequence
          Length = 145002

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 580    cacaaacataatcaaaatca 599
              ||||||||||||||||||||
Sbjct: 133252 cacaaacataatcaaaatca 133271

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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 382     agctcgccaacgcccgcgac 401
               ||||||||||||||||||||
Sbjct: 4842527 agctcgccaacgcccgcgac 4842546

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>emb|AL161791.15| Human DNA sequence from clone RP11-82L2 on chromosome 9 Contains the 5'
             end of the SMC2L1 gene for SMC2 structural maintenance of
             chromosomes 2-like 1 (yeast) (CAPE, CAP-E, hCAP-E) and a
             CpG island, complete sequence
          Length = 108821

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 321   cagctcacctgcctcatcaa 340
             ||||||||||||||||||||
Sbjct: 64041 cagctcacctgcctcatcaa 64022

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>emb|AL138718.17| Human DNA sequence from clone RP11-127P7 on chromosome 6 Contains a
            novel gene, a mitochondrial ribosomal protein L35
            (MRPL35) pseudogene and a CpG island, complete sequence
          Length = 108813

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 216  aatgggctgaggcctctgtt 235
            ||||||||||||||||||||
Sbjct: 8374 aatgggctgaggcctctgtt 8393

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>gb|AC157572.4| Mus musculus BAC clone RP23-79O10 from chromosome 14, complete sequence
          Length = 242759

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 621   tatagacatgaaaagcaagc 640
             ||||||||||||||||||||
Sbjct: 49893 tatagacatgaaaagcaagc 49874

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>gb|AC127357.5| Mus musculus BAC clone RP23-103P11 from chromosome 3, complete sequence
          Length = 220032

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 316    ctggacagctcacctgcctc 335
              ||||||||||||||||||||
Sbjct: 159742 ctggacagctcacctgcctc 159761

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>emb|AL162757.2|NMA6Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome;
             segment 6/7
          Length = 326301

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 591   tcaaaatcatcgtctccatt 610
             ||||||||||||||||||||
Sbjct: 33184 tcaaaatcatcgtctccatt 33203

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>gb|AC159323.3| Mus musculus BAC clone RP23-6I8 from chromosome 14, complete sequence
          Length = 223640

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 621   tatagacatgaaaagcaagc 640
             ||||||||||||||||||||
Sbjct: 88014 tatagacatgaaaagcaagc 88033

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>gb|AC016395.5| Homo sapiens chromosome 10 clone RP11-153K11, complete sequence
          Length = 166869

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 245    acatgagaggcacagagaag 264
              ||||||||||||||||||||
Sbjct: 108623 acatgagaggcacagagaag 108642

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>gb|AC018452.11| Homo sapiens chromosome 3 BAC RP11-23D24 (Roswell Park Cancer Institute
              Human BAC Library) complete sequence
          Length = 171523

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 622    atagacatgaaaagcaagct 641
              ||||||||||||||||||||
Sbjct: 136642 atagacatgaaaagcaagct 136623

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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     cgcgggcgtggagaagggca 90
              ||||||||||||||||||||
Sbjct: 659635 cgcgggcgtggagaagggca 659654

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>gb|AE002098.2| Neisseria meningitidis MC58, complete genome
          Length = 2272360

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 591     tcaaaatcatcgtctccatt 610
               ||||||||||||||||||||
Sbjct: 1623564 tcaaaatcatcgtctccatt 1623583

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>gb|AC073120.5| Homo sapiens BAC clone RP11-612D17 from 2, complete sequence
          Length = 43877

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 301  tgttcatcactactcctggacagc 324
            |||||||||||||||||| |||||
Sbjct: 2626 tgttcatcactactcctgcacagc 2649

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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 519     gacatcgaggcagtgaagaaggca 542
               ||||||||||| ||||||||||||
Sbjct: 1211680 gacatcgaggccgtgaagaaggca 1211703

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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 502     gcaagctggccggcattgac 521
               ||||||||||||||||||||
Sbjct: 5024434 gcaagctggccggcattgac 5024453

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>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome
          Length = 2153922

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 591     tcaaaatcatcgtctccatt 610
               ||||||||||||||||||||
Sbjct: 1171914 tcaaaatcatcgtctccatt 1171933

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>gb|AC131658.3| Mus musculus BAC clone RP23-239F24 from 3, complete sequence
          Length = 200955

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 316   ctggacagctcacctgcctc 335
             ||||||||||||||||||||
Sbjct: 42270 ctggacagctcacctgcctc 42289

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>emb|CT009749.1| Medicago truncatula chromosome 5 clone mth2-46e3, COMPLETE SEQUENCE
          Length = 138861

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 580  cacaaacataatcaaaatca 599
            ||||||||||||||||||||
Sbjct: 3691 cacaaacataatcaaaatca 3710

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>emb|AL627072.17| Mouse DNA sequence from clone RP23-432B19 on chromosome 4, complete
             sequence
          Length = 208805

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 541   cagtcaaggacttggagccc 560
             ||||||||||||||||||||
Sbjct: 69139 cagtcaaggacttggagccc 69120


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,156,706
Number of Sequences: 3902068
Number of extensions: 5156706
Number of successful extensions: 112516
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111760
Number of HSP's gapped (non-prelim): 746
length of query: 652
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 629
effective length of database: 17,143,297,704
effective search space: 10783134255816
effective search space used: 10783134255816
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result