Clone Information

BLAST Search Result

Clone Name	basd13g24
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RS2_STRCO (O31212) 30S ribosomal protein S2	35	0.18
2	MYBPH_CHICK (Q05623) Myosin-binding protein H (MyBP-H) (H-protei...	34	0.31
3	P60_LISMO (P21171) Protein p60 precursor (Invasion-associated pr...	34	0.31
4	DBP3_NEUCR (Q7S5R1) ATP-dependent RNA helicase dbp-3 (EC 3.6.1.-)	34	0.31
5	BASP_HUMAN (P80723) Brain acid soluble protein 1 (BASP1 protein)...	33	0.41
6	ZFX_BOVIN (O62836) Zinc finger X-chromosomal protein	33	0.54
7	UBQL4_HUMAN (Q9NRR5) Ubiquilin-4 (Ataxin-1 ubiquitin-like-intera...	33	0.54
8	M3K6_HUMAN (O95382) Mitogen-activated protein kinase kinase kina...	33	0.70
9	ZFX_HUMAN (P17010) Zinc finger X-chromosomal protein	32	0.92
10	ZBT17_CHICK (Q90625) Zinc finger and BTB domain-containing prote...	32	0.92
11	IF2_CAUCR (Q9AC25) Translation initiation factor IF-2	32	1.2
12	RS2_STRAW (Q82JX7) 30S ribosomal protein S2	32	1.2
13	MSA2_PLAFG (P19260) Merozoite surface antigen 2 precursor (MSA-2...	32	1.2
14	LEUK_MOUSE (P15702) Leukosialin precursor (Leucocyte sialoglycop...	32	1.6
15	TOP2B_CHICK (O42131) DNA topoisomerase 2-beta (EC 5.99.1.3) (DNA...	31	2.0
16	MSA2_PLAF8 (Q99320) Merozoite surface antigen 2 precursor (MSA-2...	31	2.0
17	L100_ADEG1 (Q64760) Late 100 kDa protein	31	2.0
18	BASP_MOUSE (Q91XV3) Brain acid soluble protein 1 (BASP1 protein)...	31	2.0
19	IWS1_YARLI (Q6CGB2) Transcription factor IWS1	31	2.0
20	OXRP_HUMAN (Q9Y4L1) 150 kDa oxygen-regulated protein precursor (...	31	2.7
21	CCD96_HUMAN (Q2M329) Coiled-coil domain-containing protein 96	31	2.7
22	VID21_GIBZE (Q4IB96) Chromatin modification-related protein VID21	31	2.7
23	HSP1_ORCOR (P24713) Sperm protamine P1 (Cysteine-rich protamine)	30	3.5
24	YUEB_BACSU (O32101) Bacteriophage SPP1 adsorption protein yueB (...	30	3.5
25	NEUM_SERCA (Q98987) Neuromodulin (Axonal membrane protein GAP-43...	30	3.5
26	FRZE_MYXXA (P18769) Gliding motility regulatory protein (EC 2.7....	30	3.5
27	Y966_TREPA (O83932) Hypothetical protein TP0966 precursor	30	4.5
28	MSA2_PLAF2 (Q03646) Merozoite surface antigen 2 precursor (MSA-2)	30	4.5
29	IE63_MCMVS (Q69154) Transcriptional regulator IE63 homolog (Prot...	30	4.5
30	NFL_BOVIN (P02548) Neurofilament triplet L protein (68 kDa neuro...	30	4.5
31	ARP4_KLULA (Q6CSB9) Actin-like protein ARP4	30	4.5
32	ARGJ_CHRVO (Q7P0T8) Arginine biosynthesis bifunctional protein a...	30	4.5
33	MED9_YEAST (P33308) RNA polymerase II mediator complex subunit 9...	30	5.9
34	MAP1B_HUMAN (P46821) Microtubule-associated protein 1B (MAP 1B) ...	30	5.9
35	SPRI_DROME (Q8MQW8) Protein sprint (SH2 poly-proline-containing ...	30	5.9
36	SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1...	30	5.9
37	MAML2_HUMAN (Q8IZL2) Mastermind-like protein 2 (Mam-2)	30	5.9
38	NEUM_CHICK (P35001) Neuromodulin (Axonal membrane protein GAP-43...	29	7.8
39	RLA0_METAC (Q8TI80) Acidic ribosomal protein P0 homolog (L10E)	29	7.8
40	CD2L5_HUMAN (Q14004) Cell division cycle 2-like protein kinase 5...	29	7.8
41	ZBT17_MOUSE (Q60821) Zinc finger and BTB domain-containing prote...	29	7.8
42	CY1_PARDE (P13627) Cytochrome c1 precursor	29	7.8
43	NCA11_MOUSE (P13595) Neural cell adhesion molecule 1, 180 kDa is...	29	7.8
44	SIAL_HUMAN (P21815) Bone sialoprotein-2 precursor (Bone sialopro...	29	7.8
45	RFAF_ECOLI (P37692) ADP-heptose--LPS heptosyltransferase 2 (EC 2...	29	7.8
46	CCDC8_RAT (P62521) Probable Coiled-coil domain-containing protein 8	29	7.8
47	TONB_PASMU (Q9ZH79) Protein tonB	29	7.8
48	MSA2_PLAF1 (P50496) Merozoite surface antigen 2 precursor (MSA-2)	29	7.8
49	Y2340_MYCBO (P64994) Hypothetical protein Mb2340c	29	7.8
50	Y2313_MYCTU (P64993) Hypothetical protein Rv2313c/MT2376	29	7.8
51	NFH_RAT (P16884) Neurofilament triplet H protein (200 kDa neurof...	29	7.8

>RS2_STRCO (O31212) 30S ribosomal protein S2|
          Length = 310

 Score = 34.7 bits (78), Expect = 0.18
 Identities = 21/57 (36%), Positives = 32/57 (56%)
 Frame = +1

Query: 7   LQHLQXEKKEEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEE 177
           L+  + EKK++A++   PA  P AE  + A AAEA  A   PA+  A +    +AE+
Sbjct: 254 LEGEKAEKKDDAEAAEKPAEAPAAEAPA-AEAAEAPAAEAAPAEEPAAEAPAADAEQ 309

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>MYBPH_CHICK (Q05623) Myosin-binding protein H (MyBP-H) (H-protein) (86 kDa|
           protein)
          Length = 537

 Score = 33.9 bits (76), Expect = 0.31
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +1

Query: 13  HLQXEKKEEADSTINPATPPPAEVKSDAPAAEATKATENPAD 138
           H    K+E A        PPP E  + APAAE   A E+P D
Sbjct: 44  HAPTPKEEHAPPPKEEHAPPPKEEHAPAPAAETPPAPEHPPD 85

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>P60_LISMO (P21171) Protein p60 precursor (Invasion-associated protein)|
          Length = 484

 Score = 33.9 bits (76), Expect = 0.31
 Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +1

Query: 49  TINPATPPPAEVKSDAPAAE---ATKATENPADNAAHKDDQGNAEEQSTA 189
           T N ATP  AEVK++APAAE   A    EN   N A  + +  A +Q TA
Sbjct: 247 TANTATPK-AEVKTEAPAAEKQAAPVVKENTNTNTATTEKKETATQQQTA 295

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>DBP3_NEUCR (Q7S5R1) ATP-dependent RNA helicase dbp-3 (EC 3.6.1.-)|
          Length = 614

 Score = 33.9 bits (76), Expect = 0.31
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
 Frame = +1

Query: 28  KKEEADSTINPATPPPAEVKSDAPAAEAT------------KATENPADNAAHKDDQGNA 171
           KKE+ D   +PAT    +V     AAE              K  ++  +  A K D+   
Sbjct: 57  KKEKKDQDESPATESTEDVSMPDAAAEPVADKKEKKEKKDKKEKKDKKEKKAKKSDESTT 116

Query: 172 EEQSTAN-ADNNGQIHPGAST 231
           EE ++A+ A  NG   P AST
Sbjct: 117 EESTSASKATTNGTTTPAAST 137

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>BASP_HUMAN (P80723) Brain acid soluble protein 1 (BASP1 protein) (Neuronal|
           axonal membrane protein NAP-22) (22 kDa neuronal
           tissue-enriched acidic protein)
          Length = 226

 Score = 33.5 bits (75), Expect = 0.41
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +1

Query: 19  QXEKKEEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANAD 198
           + +KK E  +T    TP  +E ++ A  AEA +  E P  +A  K ++   E+ + A  +
Sbjct: 20  EKDKKAEGAATEEEGTPKESEPQAAAEPAEAKEGKEKPDQDAEGKAEEKEGEKDAAAAKE 79

Query: 199 NNGQIHP 219
              +  P
Sbjct: 80  EAPKAEP 86

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>ZFX_BOVIN (O62836) Zinc finger X-chromosomal protein|
          Length = 800

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
 Frame = +1

Query: 1   GHLQHLQXEKKEEADSTINPATPPPAEVK---SDAPAAEATKATENPADNAAHKDDQGNA 171
           GH++H+  +   EA+   +P T      +   +D  +     A   P D    +DD+GN 
Sbjct: 146 GHVEHVVHDSVVEAEIVTDPLTADVVSEEVLVADCASEAVIDANGIPVDQ--QEDDKGNC 203

Query: 172 EEQSTANADNNGQI-HPGAS 228
           E+    + D+ G+I H G+S
Sbjct: 204 EDYLMISLDDAGKIEHDGSS 223

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>UBQL4_HUMAN (Q9NRR5) Ubiquilin-4 (Ataxin-1 ubiquitin-like-interacting protein|
           A1U)
          Length = 601

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = +1

Query: 19  QXEKKEEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANAD 198
           Q  +   A +  +P+TP PA   S  PA+ AT A   P+ + +   D G+   +S+    
Sbjct: 86  QKAQDPAAATASSPSTPDPASAPSTTPASPATPA--QPSTSGSASSDAGSGSRRSSGGGP 143

Query: 199 NNG 207
           + G
Sbjct: 144 SPG 146

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>M3K6_HUMAN (O95382) Mitogen-activated protein kinase kinase kinase 6 (EC|
           2.7.11.25)
          Length = 1011

 Score = 32.7 bits (73), Expect = 0.70
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -1

Query: 396 AEKRSLQLRALSG*TRLQSSKQ--MRDPILSTQRPSLFPVSPRLACRPGNLPSGA 238
           AE ++  LR      RL++S Q  + DP L   + S  P SPR A RP + PS +
Sbjct: 600 AEAQAFLLRTFEPDPRLRASAQTLLGDPFLQPGKRSRSPSSPRHAPRPSDAPSAS 654

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>ZFX_HUMAN (P17010) Zinc finger X-chromosomal protein|
          Length = 805

 Score = 32.3 bits (72), Expect = 0.92
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
 Frame = +1

Query: 1   GHLQHLQXEKKEEADSTINPATPPPAEVK---SDAPAAEATKATENPADNAAHKDDQGNA 171
           GH++H+  +   EA+   +P T      +   +D  +     A   P D     DD+GN 
Sbjct: 151 GHVEHVVHDSVVEAEIVTDPLTTDVVSEEVLVADCASEAVIDANGIPVDQ--QDDDKGNC 208

Query: 172 EEQSTANADNNGQI-HPGAS 228
           E+    + D+ G+I H G+S
Sbjct: 209 EDYLMISLDDAGKIEHDGSS 228

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>ZBT17_CHICK (Q90625) Zinc finger and BTB domain-containing protein 17 (Zinc|
           finger protein 151) (Zinc finger protein Z13) (Fragment)
          Length = 706

 Score = 32.3 bits (72), Expect = 0.92
 Identities = 22/63 (34%), Positives = 28/63 (44%)
 Frame = +1

Query: 37  EADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANADNNGQIH 216
           + DS      PP  E K +AP A A +  E PA+    K  +G AE Q     DN  +  
Sbjct: 38  QGDSDKPKQVPPNQEGKEEAPVATAAQPKE-PAEQPDAK--EGPAEGQQPGGVDNAAEAS 94

Query: 217 PGA 225
           P A
Sbjct: 95  PAA 97

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>IF2_CAUCR (Q9AC25) Translation initiation factor IF-2|
          Length = 1009

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 58  PATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQS 183
           P TPPPA  ++  P A+A  A   P  +A  +D +  A  Q+
Sbjct: 163 PVTPPPAAPQAPRPVAQAPVAPSAPRQDAPRQDTRAAAPGQT 204

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>RS2_STRAW (Q82JX7) 30S ribosomal protein S2|
          Length = 308

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +1

Query: 16  LQXEKK-EEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEE 177
           L+ EKK +EA++        PAE  ++APAAEA  A    A+  A +    +AE+
Sbjct: 253 LEGEKKADEAEAPAAAEAEKPAEAAAEAPAAEAPAAEAPAAEAPAAEAPAADAEQ 307

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>MSA2_PLAFG (P19260) Merozoite surface antigen 2 precursor (MSA-2) (Allelic|
           form 2) (Membrane protein PF7)
          Length = 287

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +1

Query: 40  ADSTINPATPPPAEVKSDAPAAEATKAT--ENPADNAAHKDDQGNAEEQSTANADNNGQ 210
           AD+  +P+TP      +    AEA+ +T  ENP  N A + +Q N E Q+ +N   + Q
Sbjct: 116 ADAERSPSTPATTTTTTTTNDAEASTSTSSENPNHNNA-ETNQANKETQNNSNVQQDSQ 173

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>LEUK_MOUSE (P15702) Leukosialin precursor (Leucocyte sialoglycoprotein)|
           (Sialophorin) (Ly-48) (B cell differentiation antigen
           LP-3) (CD43 antigen)
          Length = 395

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
 Frame = +1

Query: 34  EEADSTINPATPPPAEVKSDAPAAEATKATENPADN-------AAHKDDQGNAEEQSTAN 192
           +E  S  +   P P+ V SD P   A   T+ PA N       A+    +G +   +T  
Sbjct: 104 QEVSSKTSALLPEPSNVASDPPVTAANPVTDGPAANPVTDGTAASTSISKGTSAPPTTVT 163

Query: 193 ADNNGQIHPGAST 231
             +N    P  +T
Sbjct: 164 TSSNETSGPSVAT 176

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>TOP2B_CHICK (O42131) DNA topoisomerase 2-beta (EC 5.99.1.3) (DNA topoisomerase|
            II, beta isozyme)
          Length = 1627

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = +1

Query: 28   KKEEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANADNNG 207
            KK + D    P   P A+ K +   +++      P   AA K     A+++ T+ ++N G
Sbjct: 1501 KKAKVDVPPKPKRAPKAK-KMETVNSDSDSEFGIPKKTAAPKGKGRGAKKRKTSGSENEG 1559

Query: 208  QIHPGASTVKCT 243
            + +PG    K T
Sbjct: 1560 EYNPGKKAPKST 1571

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>MSA2_PLAF8 (Q99320) Merozoite surface antigen 2 precursor (MSA-2) (Allelic|
           form 4)
          Length = 276

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
 Frame = +1

Query: 40  ADSTINPATPPPAEVKSDAPAAEATKAT--ENPADNAAHKDDQGNAE----EQSTANADN 201
           AD+  +P+TP      +    AEA+ +T  ENP  N A  + +G  E     Q+     N
Sbjct: 94  ADAERSPSTPATTTTTTTTNDAEASTSTSSENPNHNNAETNPKGKGEVQKPNQANKETQN 153

Query: 202 NGQIHPGAST 231
           N  +   + T
Sbjct: 154 NSNVQQDSQT 163

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>L100_ADEG1 (Q64760) Late 100 kDa protein|
          Length = 984

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 15/71 (21%)
 Frame = +1

Query: 13  HLQXEKKEEADSTI------NPATPPPAEVKSDAPAAEATKAT-----ENPADNAAHKD- 156
           H + +   +ADS         P TP   E + D+P++E T +T     +  A N +H D 
Sbjct: 151 HREADHDSDADSGYYSADGGRPGTPVDEEPQDDSPSSEETASTVIEEAQTSASNDSHDDD 210

Query: 157 ---DQGNAEEQ 180
              D G+A E+
Sbjct: 211 THRDDGSASEE 221

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>BASP_MOUSE (Q91XV3) Brain acid soluble protein 1 (BASP1 protein) (Neuronal|
           axonal membrane protein NAP-22) (22 kDa neuronal
           tissue-enriched acidic protein)
          Length = 225

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = +1

Query: 25  EKKEEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANA 195
           +KK E   T    TP  +E ++ A A E  ++TE    +AA  D +  AEE+    A
Sbjct: 22  DKKAEGAGTEEEGTPKESEPQAAADATEVKESTEEKPKDAA--DGEAKAEEKEADKA 76

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>IWS1_YARLI (Q6CGB2) Transcription factor IWS1|
          Length = 414

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = +1

Query: 19  QXEKKEEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANA 195
           + E  EE    +  A    +E   +APA  AT     PAD+     D  + +E    NA
Sbjct: 23  EEENVEEPAEDVGEAAEEASEAPEEAPAEAATTTEAAPADDDEDDSDLSDLDEDEIKNA 81

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>OXRP_HUMAN (Q9Y4L1) 150 kDa oxygen-regulated protein precursor (Orp150)|
           (Hypoxia up-regulated 1)
          Length = 999

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +1

Query: 19  QXEKKEEADSTINPAT-PPPAEVKSDA-PAAEATKATENPADNAAHKDDQ 162
           Q E KEEA++ +   + PPP E K DA P  E     EN   + A K  +
Sbjct: 619 QVELKEEAEAPVEDGSQPPPPEPKGDATPEGEKATEKENGDKSEAQKPSE 668

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>CCD96_HUMAN (Q2M329) Coiled-coil domain-containing protein 96|
          Length = 555

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 21/69 (30%), Positives = 29/69 (42%)
 Frame = +1

Query: 19  QXEKKEEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANAD 198
           + E++E+A S    A    AE      AAEA    E P +     + Q   EE +   A+
Sbjct: 48  EEEEEEQAASQGGTAADEQAEAPKGLTAAEAA-GEEGPGEPGRPAEPQPEPEEPAEVGAE 106

Query: 199 NNGQIHPGA 225
              Q  PGA
Sbjct: 107 EPAQPEPGA 115

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>VID21_GIBZE (Q4IB96) Chromatin modification-related protein VID21|
          Length = 1629

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
 Frame = +1

Query: 25  EKKEEADSTINPATPPPAEVKSDAPAAEA------TKATENPADNAAHKDDQGNAEEQST 186
           E   E+ +T NP  PP    ++  P A+A      T + + PA   A+ +   N E++S 
Sbjct: 238 ETSTESATTANPVPPPAKNTQAVLPPADAIEKPIPTTSPDVPASTGANANSITNEEDRSD 297

Query: 187 AN 192
            N
Sbjct: 298 PN 299

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>HSP1_ORCOR (P24713) Sperm protamine P1 (Cysteine-rich protamine)|
          Length = 46

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -3

Query: 286 RFASPRLSS-RQPTLRCISRWKHPDGSVRCCRRSRWIVLRRYPGHPCEQR 140
           R  SP  S  R+P  RC  R       +RCCRR R +  RRY    C ++
Sbjct: 4   RCRSPSQSRCRRPRRRCRRR-------IRCCRRQRRVCCRRYTTTRCARQ 46

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>YUEB_BACSU (O32101) Bacteriophage SPP1 adsorption protein yueB (Bacteriophage|
           SPP1 receptor protein yueB)
          Length = 1076

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
 Frame = +1

Query: 7   LQHLQXEKKEEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQ------GN 168
           L+++  E K+ ++    P    P    ++ P+ + +  TE P+++    DDQ      G+
Sbjct: 416 LKNVATEIKDISEGLKEPEQEKPTTPDAEEPSTDDSPNTEEPSNDIPTSDDQPTNEDTGS 475

Query: 169 AEEQSTANADNN 204
           +EE +  N   N
Sbjct: 476 SEEGTQDNGSQN 487

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>NEUM_SERCA (Q98987) Neuromodulin (Axonal membrane protein GAP-43)|
           (Growth-associated protein 43) (Fragment)
          Length = 241

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 20/65 (30%), Positives = 27/65 (41%)
 Frame = +1

Query: 25  EKKEEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANADNN 204
           +KKEE      PA       +S+APAA    A ++       KD    AEE+    A + 
Sbjct: 62  DKKEEG-----PAGGAAENKESEAPAATEAAAADSAQQEEGSKDSSAPAEEKKGDGAADT 116

Query: 205 GQIHP 219
           G   P
Sbjct: 117 GSEQP 121

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>FRZE_MYXXA (P18769) Gliding motility regulatory protein (EC 2.7.13.3)|
          Length = 777

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +1

Query: 58  PATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANADNNGQIH 216
           P  PPP +     P A A  A  +PA  AAH  D+       +A AD + +++
Sbjct: 170 PVAPPPTQAPVAEPGAHAAAAAPHPA--AAHGRDEEAPSAAKSAVADRSIRVN 220

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>Y966_TREPA (O83932) Hypothetical protein TP0966 precursor|
          Length = 544

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 23/83 (27%), Positives = 31/83 (37%)
 Frame = -3

Query: 454 RHKPACRPAAPRKTTSCEVCGEEKPTITGAVGLNTLTVLKANAGSHPKHTETKFVPRFAS 275
           R     RP  P     C +CG     +  AVG     V      + P HT ++ VP    
Sbjct: 4   RRMLCARPWGP-SCVVCALCGA-LAALVPAVGAQEQAVPAPGTPAPPAHTASEAVPPAPE 61

Query: 274 PRLSSRQPTLRCISRWKHPDGSV 206
           PR    QP+    +    P G+V
Sbjct: 62  PRAEGEQPSPLVPTALPVPGGAV 84

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>MSA2_PLAF2 (Q03646) Merozoite surface antigen 2 precursor (MSA-2)|
          Length = 347

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +1

Query: 46  STINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAE---EQSTANADNNGQIH 216
           S+  PAT       +DA A+ +T ++EN   N A  + +GN E    Q+     NN  + 
Sbjct: 171 SSSTPATTTTTTTTNDAEASTST-SSENSNHNNAETNPKGNGEVQPNQANKETQNNSNVQ 229

Query: 217 PGAST 231
             + T
Sbjct: 230 QDSQT 234

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>IE63_MCMVS (Q69154) Transcriptional regulator IE63 homolog (Protein UL69)|
          Length = 841

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
 Frame = +1

Query: 10  QHLQXEKKEEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKD----DQGNAE- 174
           Q  Q  +    +S+   A PPP    S +PA+   + +++P+ +    D    +  +AE 
Sbjct: 596 QSQQQPETTSKESSKTAAMPPPPSPCSPSPASRERRPSKSPSSSPRPHDPPSGEPADAEK 655

Query: 175 EQSTANADNNGQIHPGASTV 234
           E +TA  ++ G   PG  +V
Sbjct: 656 ELATAGDEDEGVRSPGECSV 675

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>NFL_BOVIN (P02548) Neurofilament triplet L protein (68 kDa neurofilament|
           protein) (Neurofilament light polypeptide) (NF-L) (Micro
           glutamic acid-rich protein)
          Length = 554

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = +1

Query: 19  QXEKKEEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANAD 198
           + E +EE  +    A    AE   +    E  +A E        K D+G  EEQ+T   D
Sbjct: 495 EAEAEEEEGAQEEEAAKEDAEEAKEEEGGEGEEAEETKEAEEEEKKDEGAGEEQATKKKD 554

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>ARP4_KLULA (Q6CSB9) Actin-like protein ARP4|
          Length = 520

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 21/73 (28%), Positives = 33/73 (45%)
 Frame = +1

Query: 25  EKKEEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANADNN 204
           EK+  A+ST     P PA  + +A  + + +  EN      +K+D  N E+ S  N   N
Sbjct: 334 EKENTAEST-----PVPASTEQEAVDSPSQEPNENGKRPVENKEDSSNNEQNS--NEIKN 386

Query: 205 GQIHPGASTVKCT 243
              +   S+ K T
Sbjct: 387 EDANSNESSAKAT 399

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>ARGJ_CHRVO (Q7P0T8) Arginine biosynthesis bifunctional protein argJ [Includes:|
           Glutamate N-acetyltransferase (EC 2.3.1.35) (Ornithine
           acetyltransferase) (Ornithine transacetylase) (OATase);
           Amino-acid acetyltransferase (EC 2.3.1.1)
           (N-acetylglutamate syn
          Length = 405

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 73  PAEVKSD-APAAEATKATENPADNAAHKDDQGNAEEQSTANADNNGQIHPGASTV 234
           PA  ++D A AAEA   T+  A  A+ + D G      T  A  +G IHP  +T+
Sbjct: 136 PALRQADWAEAAEAIMTTDTLAKAASRRLDIGGKAVTVTGIAKGSGMIHPNMATM 190

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>MED9_YEAST (P33308) RNA polymerase II mediator complex subunit 9 (Chromosome|
           segregation protein 2)
          Length = 149

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +1

Query: 73  PAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQ--STANADNNGQIHP 219
           P     D P AEATK   + A+N   KD   N + +  ST +  +NG+  P
Sbjct: 17  PTNPTLDKPNAEATKEEFSSAENRDEKDYLTNQQPKNLSTPSTSSNGEFIP 67

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>MAP1B_HUMAN (P46821) Microtubule-associated protein 1B (MAP 1B) [Contains: MAP1|
            light chain LC1]
          Length = 2468

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 20/66 (30%), Positives = 29/66 (43%)
 Frame = +1

Query: 25   EKKEEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANADNN 204
            +KKE  +    P T P  EVK+ A   E  K T+N A+ +A K  +       T     +
Sbjct: 2291 KKKESVEKAAKPTTTP--EVKA-ARGEEKDKETKNAANASASKSAKTATAGPGTTKTTKS 2347

Query: 205  GQIHPG 222
              + PG
Sbjct: 2348 SAVPPG 2353

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>SPRI_DROME (Q8MQW8) Protein sprint (SH2 poly-proline-containing Ras-interactor|
            protein)
          Length = 1790

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = +1

Query: 58   PATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTAN---ADNNGQIHPGAS 228
            P+TP P +     P  E T AT N + + +     G+   +S A     + +GQ+ P A 
Sbjct: 976  PSTPTPTQQSHLTPCEEETTATPNESSSQSLLQFSGDVPARSRAGLLLPNLSGQVPPVAM 1035

Query: 229  TVKCT 243
            T   T
Sbjct: 1036 TKSMT 1040

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>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
            (Plenty-of-prolines 101)
          Length = 946

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +1

Query: 4    HLQHLQXEKKEEADSTINPATPPPAEVKSDAPAAEATKATENP-ADNAAHKDDQGNAEEQ 180
            H +H +  KKE+A +   PAT  PA V     AA  T A E P A     K+ +  AE+ 
Sbjct: 866  HKKH-KKHKKEKAVTIATPATAAPAAVS----AATTTSAQEEPAAAPEPRKETESEAEDD 920

Query: 181  S 183
            +
Sbjct: 921  N 921

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>MAML2_HUMAN (Q8IZL2) Mastermind-like protein 2 (Mam-2)|
          Length = 1153

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 20/67 (29%), Positives = 24/67 (35%)
 Frame = +1

Query: 31  KEEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANADNNGQ 210
           K  A +    A PPP      A  A AT A   P D   H          +  +   NG+
Sbjct: 94  KATATAATTTAPPPPPAAPPAASQAAATAAPPPPPDYHHHHQQHLLNSSNNGGSGGINGE 153

Query: 211 IHPGAST 231
             P AST
Sbjct: 154 QQPPAST 160

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>NEUM_CHICK (P35001) Neuromodulin (Axonal membrane protein GAP-43)|
           (Growth-associated protein 43)
          Length = 246

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
 Frame = +1

Query: 1   GHL--QHLQXEKKEEADSTINPATPP----PAEVKSDAPAAEATKATENPADNAAHKDDQ 162
           GH+  + L+ EKK +A ++ + A       PA  +++   +EA+ ATE  A ++A  D+ 
Sbjct: 45  GHITRKKLKGEKKADAPASESEAADKKDEGPAGGRAENKESEASTATEASAADSAQLDEG 104

Query: 163 GNAEEQSTANADNNGQIHPGA 225
                  T     NG    G+
Sbjct: 105 SKDSSVPTEEKKGNGAADTGS 125

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>RLA0_METAC (Q8TI80) Acidic ribosomal protein P0 homolog (L10E)|
          Length = 347

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +1

Query: 34  EEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANAD 198
           E AD   N       EV   A +A A  A   PA+    K+++   EE+  A  D
Sbjct: 283 EAADKDANAVDDDLREVLGAAASAAAAAAAAAPAEEEVKKEEEPEEEEEDHAEED 337

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>CD2L5_HUMAN (Q14004) Cell division cycle 2-like protein kinase 5 (EC 2.7.11.22)|
           (CDC2-related protein kinase 5) (Cholinesterase-related
           cell division controller)
          Length = 1512

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +3

Query: 9   PASSXGEERRGR*HHQSSDPSSSGGEVRCSSGRGNKSHRESSRQRCSQG 155
           PASS G +RRG              + R SSGR  + HRE  R+   +G
Sbjct: 181 PASSSGTQRRGE-----GSERRPRRDRRSSSGRSKERHREHRRRDGQRG 224

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>ZBT17_MOUSE (Q60821) Zinc finger and BTB domain-containing protein 17 (Zinc|
           finger protein 151) (Zinc finger protein 100) (Zfp-100)
           (Polyomavirus late initiator promoter-binding protein)
           (LP-1) (Zinc finger protein Z13)
          Length = 794

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = +1

Query: 25  EKKEEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANADNN 204
           E+ E+AD+   P  PPP E+K D  ++ A    E  ++++    +Q    E ++   D  
Sbjct: 181 EQTEKADA---PREPPPVELKPDPTSSMAAAEAEALSESS----EQEMEVEPASKGEDGQ 233

Query: 205 GQIHPGASTVK 237
            +   G +TVK
Sbjct: 234 EEEGAGPATVK 244

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>CY1_PARDE (P13627) Cytochrome c1 precursor|
          Length = 450

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +1

Query: 34  EEADSTINPATPPPAEVKSDAPAAEATKATEN--PADNAAHKDDQGNAEEQSTANADN 201
           EEA +   PA P   E  ++ PAAE  +ATE   PA+ AA ++       +  A AD+
Sbjct: 144 EEAAAEEAPAEP---EAAAEEPAAEEPEATEEEAPAEEAAAEEAPAEEVVEDEAAADH 198

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>NCA11_MOUSE (P13595) Neural cell adhesion molecule 1, 180 kDa isoform precursor|
            (N-CAM 180) (NCAM-180)
          Length = 1115

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
 Frame = +1

Query: 25   EKKEEADSTINPATPP--PAEVKSD-----APAAEATKA-TENPADNAAHKDDQGN 168
            + K+EA ST  P   P  P  VK+      APA+  +KA T NP+     K D+GN
Sbjct: 972  QAKQEAPSTKGPDPEPTQPGTVKNPPEAATAPASPKSKAATTNPSQGEDLKMDEGN 1027

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>SIAL_HUMAN (P21815) Bone sialoprotein-2 precursor (Bone sialoprotein II) (BSP|
           II) (Cell-binding sialoprotein) (Integrin-binding
           sialoprotein)
          Length = 317

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 115 KAT-ENPADNAAHKDDQGNAEEQSTANADNNGQIHPGAST 231
           KAT E  +D    ++++GN  E+S A  D N Q   G ST
Sbjct: 142 KATKEKESDEEEEEEEEGNENEESEAEVDENEQGINGTST 181

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>RFAF_ECOLI (P37692) ADP-heptose--LPS heptosyltransferase 2 (EC 2.-.-.-)|
           (ADP-heptose--LPS heptosyltransferase II)
          Length = 348

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 263 VQATYPQVHFTVEAPGWICPLLSAFAVDCSSALP 162
           +QA YPQ    V AP W  PLLS    + + A+P
Sbjct: 24  LQARYPQAIIDVMAPAWCRPLLSRMP-EVNEAIP 56

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>CCDC8_RAT (P62521) Probable Coiled-coil domain-containing protein 8|
          Length = 643

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +1

Query: 40  ADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANADNNGQIHP 219
           A++T NP     A  +++A A+   +A  NP   AA      N   ++TAN       +P
Sbjct: 332 AEATANPRAEAAANPRAEAAASPRAEAAANPRAEAA-----ANPRAEATANPRAEAAANP 386

Query: 220 GA 225
            A
Sbjct: 387 RA 388

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>TONB_PASMU (Q9ZH79) Protein tonB|
          Length = 256

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 19/68 (27%), Positives = 27/68 (39%)
 Frame = +1

Query: 28  KKEEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANADNNG 207
           K+E AD T+ P  PP    K   P     K  E P +       +     +S    D+N 
Sbjct: 78  KEEVADPTVKPE-PPKEPEKPKEPEKPKEKPKEKPKEKPKKPKKEQRDLPKSDRQIDSNS 136

Query: 208 QIHPGAST 231
            I+  A+T
Sbjct: 137 SINQQATT 144

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>MSA2_PLAF1 (P50496) Merozoite surface antigen 2 precursor (MSA-2)|
          Length = 286

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
 Frame = +1

Query: 46  STINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNA----EEQSTANADNNGQI 213
           S   PAT       +DA A+ +T ++ENP  N A  + +GN       Q+     NN  +
Sbjct: 109 SPSTPATTTTTTTTNDAEASTST-SSENPNHNNAKTNPKGNGGVQKPNQANKETQNNSNV 167

Query: 214 HPGAST 231
              + T
Sbjct: 168 QQDSQT 173

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>Y2340_MYCBO (P64994) Hypothetical protein Mb2340c|
          Length = 284

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +3

Query: 273 GEAKRGTNLVSVCLGWDPAFALRTVSVFNPTAPVIVGFSS--PHTSQLVVLRGAAGRQAG 446
           G  K     V+  + WD    L + +VFN   P +    +  P TS+LV LRGAA     
Sbjct: 112 GVGKEYLGWVTGPISWDHNTDL-SAAVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCR 170

Query: 447 LCR 455
           +C+
Sbjct: 171 VCK 173

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>Y2313_MYCTU (P64993) Hypothetical protein Rv2313c/MT2376|
          Length = 284

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +3

Query: 273 GEAKRGTNLVSVCLGWDPAFALRTVSVFNPTAPVIVGFSS--PHTSQLVVLRGAAGRQAG 446
           G  K     V+  + WD    L + +VFN   P +    +  P TS+LV LRGAA     
Sbjct: 112 GVGKEYLGWVTGPISWDHNTDL-SAAVFNGFLPAVARMRALDPVTSELVRLRGAAQHNCR 170

Query: 447 LCR 455
           +C+
Sbjct: 171 VCK 173

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>NFH_RAT (P16884) Neurofilament triplet H protein (200 kDa neurofilament|
           protein) (Neurofilament heavy polypeptide) (NF-H)
          Length = 1072

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 23/71 (32%), Positives = 36/71 (50%)
 Frame = +1

Query: 25  EKKEEADSTINPATPPPAEVKSDAPAAEATKATENPADNAAHKDDQGNAEEQSTANADNN 204
           E K  A++        PAEVKS A A    +A ++PA+  +  + +  AE +S A A + 
Sbjct: 525 EAKSPAEAKSPAEVKSPAEVKSPAEAKSPAEA-KSPAEVKSPAEVKSPAEAKSPAEAKSP 583

Query: 205 GQIHPGASTVK 237
            ++   A TVK
Sbjct: 584 AEVKSPA-TVK 593


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,166,603
Number of Sequences: 219361
Number of extensions: 1537146
Number of successful extensions: 6248
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 5715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6211
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4488201198
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result