ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd13f21 |
|---|---|
| Clone Library Name | barley_pub |
>CHB1_LYMDI (P43515) Chorion class B protein Ld10 precursor| Length = 191 Score = 30.8 bits (68), Expect = 0.90 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = -2 Query: 253 VGGDTPGVAPXTSHPVLTVVAASDVHESVV-LPGHLDVVPGVGVNGVL 113 +GG P + PV VVA+ +V+E ++ G L V VGV GVL Sbjct: 78 IGGGLPVSSASAIAPVGLVVASENVYEGILAAAGELPFVGTVGVEGVL 125
>ZF64B_HUMAN (Q9NTW7) Zinc finger protein 64, isoforms 3 and 4 (Zinc finger| protein 338) Length = 645 Score = 29.3 bits (64), Expect = 2.6 Identities = 16/52 (30%), Positives = 26/52 (50%) Frame = +2 Query: 50 GCYLRYVHXHGETYRQLQLNGKDTINPYTRYDVQVSRKHNGLVHIRCRYNRK 205 GC+ + VH + R L+++ D + D SRK N +H+RC + K Sbjct: 305 GCHFKTVHGMKDLDRHLRIHTGDKPHKCEFCDKCFSRKDNLTMHMRCHTSVK 356
>ZFP64_MOUSE (Q99KE8) Zinc finger protein 64 (Zfp-64)| Length = 643 Score = 29.3 bits (64), Expect = 2.6 Identities = 16/52 (30%), Positives = 26/52 (50%) Frame = +2 Query: 50 GCYLRYVHXHGETYRQLQLNGKDTINPYTRYDVQVSRKHNGLVHIRCRYNRK 205 GC+ + VH + R L+++ D + D SRK N +H+RC + K Sbjct: 303 GCHFKTVHGMKDLDRHLRIHTGDKPHKCEFCDKCFSRKDNLTMHMRCHTSVK 354
>MDN1_YEAST (Q12019) Midasin (MIDAS-containing protein)| Length = 4910 Score = 28.9 bits (63), Expect = 3.4 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = -2 Query: 229 APXTSHPVLTVVAASDVHESVVLPGHLDVVPGVGVNGVLT 110 AP T+ ++ VV A VH+ ++L G PGVG ++T Sbjct: 1723 APTTASNLVRVVRAMQVHKPILLEGS----PGVGKTSLIT 1758
>AL1A4_RAT (P13601) Aldehyde dehydrogenase, cytosolic 1 (EC 1.2.1.3) (ALDH| class 1) (ALHDII) (ALDH-E1) (Aldehyde dehydrogenase family 1 member A4) Length = 500 Score = 28.5 bits (62), Expect = 4.5 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = -2 Query: 247 GDTPGVAPXTSHPVLTVVAASDVHESVVLPGHLDVVPGVG 128 G+T V P P+ + AS + E+ PG ++VVPG G Sbjct: 186 GNTVIVKPAEQTPLTALYMASLIKEAGFPPGVVNVVPGYG 225
>ACT7_ORYSA (P17300) Actin-7| Length = 376 Score = 28.5 bits (62), Expect = 4.5 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Frame = -2 Query: 277 QVFFRLVCVGGDTPGVAPXTSHPVLT--VVAASDVHESVVLPGHLDVVPGVG 128 +V F+ +G + PG+ T + ++ V D++ +VVL G + PG+G Sbjct: 260 EVLFQPSFIGMEAPGIHEATYNSIMKCDVDIRKDLYGNVVLSGGSTMFPGIG 311
>SYH_STRCO (Q9KXP2) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 425 Score = 28.1 bits (61), Expect = 5.8 Identities = 15/50 (30%), Positives = 26/50 (52%) Frame = -2 Query: 307 GLNQGTVGVGQVFFRLVCVGGDTPGVAPXTSHPVLTVVAASDVHESVVLP 158 G+ + T V + + GGD + P T+ PVL V +++H++ LP Sbjct: 59 GVGESTDIVTKEMYVFETKGGDRLALRPETTAPVLRAVLEANLHKAGNLP 108
>AL1A1_MACFA (Q8HYE4) Retinal dehydrogenase 1 (EC 1.2.1.36) (RalDH1) (RALDH 1)| (Aldehyde dehydrogenase family 1 member A1) (Aldehyde dehydrogenase, cytosolic) (ALHDII) (ALDH-E1) Length = 500 Score = 28.1 bits (61), Expect = 5.8 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = -2 Query: 247 GDTPGVAPXTSHPVLTVVAASDVHESVVLPGHLDVVPGVG 128 G+T V P P+ + AS + E+ PG +++VPG G Sbjct: 186 GNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYG 225
>AL1A1_HUMAN (P00352) Retinal dehydrogenase 1 (EC 1.2.1.36) (RalDH1) (RALDH 1)| (Aldehyde dehydrogenase family 1 member A1) (Aldehyde dehydrogenase, cytosolic) (ALHDII) (ALDH-E1) Length = 500 Score = 28.1 bits (61), Expect = 5.8 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = -2 Query: 247 GDTPGVAPXTSHPVLTVVAASDVHESVVLPGHLDVVPGVG 128 G+T V P P+ + AS + E+ PG +++VPG G Sbjct: 186 GNTVVVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYG 225
>AL1A1_RAT (P51647) Retinal dehydrogenase 1 (EC 1.2.1.36) (RalDH1) (RALDH 1)| (Aldehyde dehydrogenase family 1 member A1) (Aldehyde dehydrogenase, cytosolic) (ALHDII) (ALDH-E1) Length = 500 Score = 27.7 bits (60), Expect = 7.6 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = -2 Query: 247 GDTPGVAPXTSHPVLTVVAASDVHESVVLPGHLDVVPGVG 128 G+T V P P+ + AS + E+ PG +++VPG G Sbjct: 186 GNTVVVKPAEQTPLTALHMASLIKEAGFPPGVVNIVPGYG 225
>AL1A1_MOUSE (P24549) Retinal dehydrogenase 1 (EC 1.2.1.36) (RalDH1) (RALDH 1)| (Aldehyde dehydrogenase family 1 member A1) (Aldehyde dehydrogenase, cytosolic) (ALHDII) (ALDH-E1) Length = 500 Score = 27.7 bits (60), Expect = 7.6 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = -2 Query: 247 GDTPGVAPXTSHPVLTVVAASDVHESVVLPGHLDVVPGVG 128 G+T V P P+ + AS + E+ PG +++VPG G Sbjct: 186 GNTVVVKPAEQTPLTALHLASLIKEAGFPPGVVNIVPGYG 225
>PPE01_MYCTU (Q10892) Hypothetical PPE-family protein PPE1| Length = 463 Score = 27.7 bits (60), Expect = 7.6 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = -2 Query: 238 PGVAPXTSHPVLTVVAASDVHESVVLPGHLDVVPGVGVNGV 116 PG +P TS+P +++ V + PG VPG+ GV Sbjct: 304 PGGSPPTSNPAPAAPSSNSVGSASAAPGISYAVPGLAPPGV 344
>AL1A1_RABIT (Q8MI17) Retinal dehydrogenase 1 (EC 1.2.1.36) (RalDH1) (RALDH 1)| (Aldehyde dehydrogenase family 1 member A1) (Aldehyde dehydrogenase, cytosolic) (ALHDII) (ALDH-E1) Length = 496 Score = 27.7 bits (60), Expect = 7.6 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = -2 Query: 247 GDTPGVAPXTSHPVLTVVAASDVHESVVLPGHLDVVPGVG 128 G+T V P P+ + AS + E+ PG +++VPG G Sbjct: 182 GNTVIVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYG 221
>ALDH1_MACPR (Q29490) Aldehyde dehydrogenase, cytosolic 1 (EC 1.2.1.3) (ALDH| class 1) (ETA-crystallin) Length = 501 Score = 27.7 bits (60), Expect = 7.6 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = -2 Query: 247 GDTPGVAPXTSHPVLTVVAASDVHESVVLPGHLDVVPGVG 128 G+T V P P+ + AS + E+ PG +++VPG G Sbjct: 187 GNTVIVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYG 226
>ALDH1_ELEED (Q28399) Aldehyde dehydrogenase, cytosolic 1 (EC 1.2.1.3) (ALDH| class 1) (ETA-crystallin) Length = 501 Score = 27.7 bits (60), Expect = 7.6 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = -2 Query: 247 GDTPGVAPXTSHPVLTVVAASDVHESVVLPGHLDVVPGVG 128 G+T V P P+ + AS + E+ PG +++VPG G Sbjct: 187 GNTVIVKPAEQTPLTALHVASLIKEAGFPPGVVNIVPGYG 226 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,402,356 Number of Sequences: 219361 Number of extensions: 595868 Number of successful extensions: 2168 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2108 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2163 length of database: 80,573,946 effective HSP length: 79 effective length of database: 63,244,427 effective search space used: 1517866248 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
