ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd13f18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY220738.1| Hordeum vulgare putative protease inhibitor (SD10... 141 9e-31
2emb|Y08625.1|HVSCI2 H.vulgare mRNA for subtilisin-chymotrypsin i... 141 9e-31
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.4
4dbj|AP002866.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.4
5ref|XM_316648.2| Anopheles gambiae str. PEST ENSANGP00000011462 ... 40 2.4
6gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chr... 38 9.5
7gb|AY341341.1| Cryptococcus neoformans var. neoformans strain B3... 38 9.5
8gb|AY341340.1| Cryptococcus neoformans var. neoformans strain JE... 38 9.5
9gb|AC025426.11| Homo sapiens chromosome 10 clone RP11-242G20, co... 38 9.5
10gb|AY878695.1| Oryza sativa (japonica cultivar-group) subitilisi... 38 9.5
11gb|M19529.1|PIGFSA Pig follistatin (FS) gene, complete cds 38 9.5

>gb|AY220738.1| Hordeum vulgare putative protease inhibitor (SD10) mRNA, complete
           cds
          Length = 509

 Score =  141 bits (71), Expect = 9e-31
 Identities = 97/106 (91%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacatgagcaaaccatgcgacggtcccaagacggagtggcctgagctggncgggcgcacg 60
           |||||||||||  ||||||||||| |||||||||||||||||||||||| |||| |||||
Sbjct: 70  aacatgagcaagtcatgcgacggtgccaagacggagtggcctgagctggtcgggtgcacg 129

                                                         
Query: 61  atcgaggaggcgagagagaagatcaaggcggaccggccggacctca 106
           ||| ||||||| | ||| ||||||||||||||||||||||||||||
Sbjct: 130 atcaaggaggccaaagaaaagatcaaggcggaccggccggacctca 175



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>emb|Y08625.1|HVSCI2 H.vulgare mRNA for subtilisin-chymotrypsin inhibitor 2
          Length = 549

 Score =  141 bits (71), Expect = 9e-31
 Identities = 97/106 (91%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacatgagcaaaccatgcgacggtcccaagacggagtggcctgagctggncgggcgcacg 60
           |||||||||||  ||||||||||| |||||||||||||||||||||||| |||| |||||
Sbjct: 54  aacatgagcaagtcatgcgacggtgccaagacggagtggcctgagctggtcgggtgcacg 113

                                                         
Query: 61  atcgaggaggcgagagagaagatcaaggcggaccggccggacctca 106
           ||| ||||||| | ||| ||||||||||||||||||||||||||||
Sbjct: 114 atcaaggaggccaaagaaaagatcaaggcggaccggccggacctca 159



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 58/71 (81%)
 Strand = Plus / Minus

                                                                            
Query: 25       cccaagacggagtggcctgagctggncgggcgcacgatcgaggaggcgagagagaagatc 84
                ||||||||||||||||| ||||| |   | || |||||| ||||||| |  |||||||||
Sbjct: 24387282 cccaagacggagtggcccgagctagtttgccggacgatcaaggaggccaaggagaagatc 24387223

                           
Query: 85       aaggcggaccg 95
                || || |||||
Sbjct: 24387222 aaagcagaccg 24387212



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>dbj|AP002866.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0410E01
          Length = 166753

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 58/71 (81%)
 Strand = Plus / Minus

                                                                          
Query: 25     cccaagacggagtggcctgagctggncgggcgcacgatcgaggaggcgagagagaagatc 84
              ||||||||||||||||| ||||| |   | || |||||| ||||||| |  |||||||||
Sbjct: 133186 cccaagacggagtggcccgagctagtttgccggacgatcaaggaggccaaggagaagatc 133127

                         
Query: 85     aaggcggaccg 95
              || || |||||
Sbjct: 133126 aaagcagaccg 133116



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>ref|XM_316648.2| Anopheles gambiae str. PEST ENSANGP00000011462
           (ENSANGG00000008973), partial mRNA
          Length = 1680

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 59  cgatcgaggaggcgagagag 78
           ||||||||||||||||||||
Sbjct: 365 cgatcgaggaggcgagagag 384



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>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete
              sequence
          Length = 2300533

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 64     gaggaggcgagagagaaga 82
              |||||||||||||||||||
Sbjct: 310248 gaggaggcgagagagaaga 310230



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>gb|AY341341.1| Cryptococcus neoformans var. neoformans strain B3501 Crg1 gene,
          complete cds
          Length = 3000

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 64 gaggaggcgagagagaaga 82
          |||||||||||||||||||
Sbjct: 24 gaggaggcgagagagaaga 6



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>gb|AY341340.1| Cryptococcus neoformans var. neoformans strain JEC21 Crg1 gene,
          complete cds
          Length = 4000

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 64 gaggaggcgagagagaaga 82
          |||||||||||||||||||
Sbjct: 25 gaggaggcgagagagaaga 7



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>gb|AC025426.11| Homo sapiens chromosome 10 clone RP11-242G20, complete sequence
          Length = 153645

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 102   cctcaccgtgaatcctgtc 120
             |||||||||||||||||||
Sbjct: 49674 cctcaccgtgaatcctgtc 49656



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>gb|AY878695.1| Oryza sativa (japonica cultivar-group) subitilisin-chymotrypsin
           inhibitor (Sci3) mRNA, complete cds
          Length = 466

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 25  cccaagacggagtggcctgagct 47
           ||||||||||||||||| |||||
Sbjct: 107 cccaagacggagtggcccgagct 129



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>gb|M19529.1|PIGFSA Pig follistatin (FS) gene, complete cds
          Length = 6247

 Score = 38.2 bits (19), Expect = 9.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 64   gaggaggcgagagagaaga 82
            |||||||||||||||||||
Sbjct: 2640 gaggaggcgagagagaaga 2622


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 895,178
Number of Sequences: 3902068
Number of extensions: 895178
Number of successful extensions: 58623
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58559
Number of HSP's gapped (non-prelim): 62
length of query: 192
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 170
effective length of database: 17,147,199,772
effective search space: 2915023961240
effective search space used: 2915023961240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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