| Clone Name | basd13f07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK072816.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143J11, full insert sequence Length = 2296 Score = 664 bits (335), Expect = 0.0 Identities = 529/593 (89%), Gaps = 3/593 (0%) Strand = Plus / Plus Query: 13 gctgtaggtcaggaagcaggggctcttgaggcattagtgcaactaacatgttctcaaaac 72 ||||| ||||||||||||||||||||||||||||||||||| |||||| | |||||||| Sbjct: 812 gctgtgggtcaggaagcaggggctcttgaggcattagtgcagctaacaagctctcaaaat 871 Query: 73 gagggtgtaaggcaagaggctgctggtgctttgtggaacctatcatttgatgataggaat 132 ||||||||||| ||||| |||||||||||| ||||||| || |||||||||||||| || Sbjct: 872 gagggtgtaagacaagaagctgctggtgctctgtggaatctgtcatttgatgatagaaac 931 Query: 133 cgtgaagctattgctgctgcagggggcgttgaagcattggtttcacttgcacaacaatgt 192 ||||||| ||||||||||| || ||||||||||| |||||||||||||||||| ||||| Sbjct: 932 cgtgaaggcattgctgctgcgggtggcgttgaagctttggtttcacttgcacaagaatgt 991 Query: 193 ctgaatgcttcggaaggccttcaggagagagctgctggcgcattatggggactatctgtt 252 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 992 ttgaatgcttcggaaggccttcaggagagagctgctggcgcattatggggactatctgtt 1051 Query: 253 tcagaatcgaacagcatcgcaattggacaggagggtggcgttgcaccattgcttacaatg 312 |||||| | ||||| || |||||||||||||||||||| || ||||| ||||| ||| || Sbjct: 1052 tcagaagctaacagtatggcaattggacaggagggtggtgtcgcacctttgctcacactg 1111 Query: 313 gcacagtcagaggttgaagatgttcatgagacagctgcaggggcattgtggaatcttgct 372 ||||| ||||| |||||||||||||| |||||||||||||||||| | |||||||||||| Sbjct: 1112 gcacaatcagatgttgaagatgttcacgagacagctgcaggggcactatggaatcttgct 1171 Query: 373 ttctattccagcaatgctcagcgtatagttgaagaaggtggggtgcctatccttgtgcac 432 |||||||| | ||||||| |||| ||||||||||||||||| ||||| || |||| Sbjct: 1172 ttctattctggtaatgctctctgtattgttgaagaaggtggggttcctattctagtgcgg 1231 Query: 433 ctttgctcatcatcagggtcaaagatggctcggttcatgtctgcgctagcccttgcctac 492 ||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| || Sbjct: 1232 ctttgctcatcatcagggtcaaaaatggcacgtttcatgtctgcgctagcccttgcttat 1291 Query: 493 atgtttgatggaagaatggatgaggccgccattgttggga---catcagagggcagttcc 549 ||||| ||||||||||||||||||| || | ||||||| ||||||||||||||||| Sbjct: 1292 atgttcgatggaagaatggatgaggttgcattggttgggacgtcatcagagggcagttcc 1351 Query: 550 aaaggtgttaatgtcgagggagctagaagaatggctttgaagcatatagagac 602 || |||||||||| ||||||||||| ||||||||||||||||||||| |||| Sbjct: 1352 aagagtgttaatgttgagggagctaggagaatggctttgaagcatatacagac 1404
>gb|BT016771.1| Zea mays clone Contig604 mRNA sequence Length = 1517 Score = 466 bits (235), Expect = e-128 Identities = 507/597 (84%), Gaps = 3/597 (0%) Strand = Plus / Plus Query: 13 gctgtaggtcaggaagcaggggctcttgaggcattagtgcaactaacatgttctcaaaac 72 ||||||||||||||||||||||| || |||||| | |||||||||||| ||||||||||| Sbjct: 21 gctgtaggtcaggaagcaggggccctggaggcactggtgcaactaacaagttctcaaaac 80 Query: 73 gagggtgtaaggcaagaggctgctggtgctttgtggaacctatcatttgatgataggaat 132 ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| || || Sbjct: 81 gagggtgtaagacaagaagctgctggtgctttgtggaacctgtcatttgatgacagaaac 140 Query: 133 cgtgaagctattgctgctgcagggggcgttgaagcattggtttcacttgcacaacaatgt 192 |||||||| |||||||| | || ||||||||||| |||||| | || | ||||||||| Sbjct: 141 cgtgaagccattgctgcagtgggtggcgttgaagctttggttgccctagtgcaacaatgt 200 Query: 193 ctgaatgcttcggaaggccttcaggagagagctgctggcgcattatggggactatctgtt 252 |||||||||| ||||| |||||||||||||||||||| ||||| |||||| |||||||| Sbjct: 201 ttgaatgcttcagaaggtcttcaggagagagctgctggtgcattgtggggattatctgtt 260 Query: 253 tcagaatcgaacagcatcgcaattggacaggagggtggcgttgcaccattgcttacaatg 312 |||||| | || ||||| |||||||| |||| ||||| |||||||||||||| ||| || Sbjct: 261 tcagaagctaatagcattgcaattgggcagggtggtggggttgcaccattgctcacattg 320 Query: 313 gcacagtcagaggttgaagatgttcatgagacagctgcaggggcattgtggaatcttgct 372 |||| |||||||||||||||||||| |||||||||||||||||| | ||||||||||| Sbjct: 321 gcacgctcagaggttgaagatgttcacgagacagctgcaggggcactatggaatcttgca 380 Query: 373 ttctattccagcaatgctcagcgtatagttgaagaaggtggggtgcctatccttgtgcac 432 || ||||| | ||||||| || ||||| |||||||| ||||| ||| | ||||| | Sbjct: 381 ttttattctggtaatgctctccgcatagtcgaagaaggcggggttcctgttcttgtaaaa 440 Query: 433 ctttgctcatcatcagggtcaaagatggctcggttcatgtctgcgctagcccttgcctac 492 |||||||||||||| |||| |||||||| || ||||||||||| ||||| || || || Sbjct: 441 atttgctcatcatcacggtccaagatggcacgtttcatgtctgcactagcactagcatat 500 Query: 493 atgtttgatggaagaatggatgaggccgccattgttgggaca---tcagagggcagttcc 549 |||||||| |||||||||||||| | || | ||||| || ||||| |||||||| Sbjct: 501 atgtttgacggaagaatggatgaagttgctttggttggagcatcctcagatagcagttcc 560 Query: 550 aaaggtgttaatgtcgagggagctagaagaatggctttgaagcatatagagaccttt 606 || |||||||||| ||||||||||||||||| || || ||||||||||| |||||| Sbjct: 561 aagagtgttaatgttgagggagctagaagaatagcatttaagcatatagaaaccttt 617
>ref|NM_197764.1| Oryza sativa (japonica cultivar-group) putative arm repeat protein (OSJNBa0027P10.11), mRNA Length = 2540 Score = 337 bits (170), Expect = 3e-89 Identities = 227/246 (92%) Strand = Plus / Plus Query: 13 gctgtaggtcaggaagcaggggctcttgaggcattagtgcaactaacatgttctcaaaac 72 ||||| ||||||||||||||||||||||||||||||||||| |||||| | |||||||| Sbjct: 1849 gctgtgggtcaggaagcaggggctcttgaggcattagtgcagctaacaagctctcaaaat 1908 Query: 73 gagggtgtaaggcaagaggctgctggtgctttgtggaacctatcatttgatgataggaat 132 ||||||||||| ||||| |||||||||||| ||||||| || |||||||||||||| || Sbjct: 1909 gagggtgtaagacaagaagctgctggtgctctgtggaatctgtcatttgatgatagaaac 1968 Query: 133 cgtgaagctattgctgctgcagggggcgttgaagcattggtttcacttgcacaacaatgt 192 ||||||| ||||||||||| || ||||||||||| |||||||||||||||||| ||||| Sbjct: 1969 cgtgaaggcattgctgctgcgggtggcgttgaagctttggtttcacttgcacaagaatgt 2028 Query: 193 ctgaatgcttcggaaggccttcaggagagagctgctggcgcattatggggactatctgtt 252 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2029 ttgaatgcttcggaaggccttcaggagagagctgctggcgcattatggggactatctgtt 2088 Query: 253 tcagaa 258 |||||| Sbjct: 2089 tcagaa 2094 Score = 182 bits (92), Expect = 9e-43 Identities = 155/176 (88%) Strand = Plus / Plus Query: 331 gatgttcatgagacagctgcaggggcattgtggaatcttgctttctattccagcaatgct 390 |||||||| |||||||||||||||||| | |||||||||||||||||||| | |||||| Sbjct: 2364 gatgttcacgagacagctgcaggggcactatggaatcttgctttctattctggtaatgct 2423 Query: 391 cagcgtatagttgaagaaggtggggtgcctatccttgtgcacctttgctcatcatcaggg 450 | |||| ||||||||||||||||| ||||| || |||| |||||||||||||||||| Sbjct: 2424 ctctgtattgttgaagaaggtggggttcctattctagtgcggctttgctcatcatcaggg 2483 Query: 451 tcaaagatggctcggttcatgtctgcgctagcccttgcctacatgtttgatggaag 506 ||||| ||||| || ||||||||||||||||||||||| || ||||| |||||||| Sbjct: 2484 tcaaaaatggcacgtttcatgtctgcgctagcccttgcttatatgttcgatggaag 2539 Score = 67.9 bits (34), Expect = 4e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 271 gcaattggacaggagggtggcgttgcaccattgcttacaatggcacagtcagaggttgaa 330 |||||||||||||||||||| || ||||| ||||| ||| ||||||| ||||| |||||| Sbjct: 2182 gcaattggacaggagggtggtgtcgcacctttgctcacactggcacaatcagatgttgaa 2241 Query: 331 ga 332 || Sbjct: 2242 ga 2243
>gb|AC084763.4| Oryza sativa chromosome 10 BAC OSJNBa0027P10 genomic sequence, complete sequence Length = 141307 Score = 182 bits (92), Expect = 9e-43 Identities = 155/176 (88%) Strand = Plus / Minus Query: 331 gatgttcatgagacagctgcaggggcattgtggaatcttgctttctattccagcaatgct 390 |||||||| |||||||||||||||||| | |||||||||||||||||||| | |||||| Sbjct: 25498 gatgttcacgagacagctgcaggggcactatggaatcttgctttctattctggtaatgct 25439 Query: 391 cagcgtatagttgaagaaggtggggtgcctatccttgtgcacctttgctcatcatcaggg 450 | |||| ||||||||||||||||| ||||| || |||| |||||||||||||||||| Sbjct: 25438 ctctgtattgttgaagaaggtggggttcctattctagtgcggctttgctcatcatcaggg 25379 Query: 451 tcaaagatggctcggttcatgtctgcgctagcccttgcctacatgtttgatggaag 506 ||||| ||||| || ||||||||||||||||||||||| || ||||| |||||||| Sbjct: 25378 tcaaaaatggcacgtttcatgtctgcgctagcccttgcttatatgttcgatggaag 25323 Score = 159 bits (80), Expect = 1e-35 Identities = 86/88 (97%) Strand = Plus / Minus Query: 171 ggtttcacttgcacaacaatgtctgaatgcttcggaaggccttcaggagagagctgctgg 230 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 27963 ggtttcacttgcacaagaatgtttgaatgcttcggaaggccttcaggagagagctgctgg 27904 Query: 231 cgcattatggggactatctgtttcagaa 258 |||||||||||||||||||||||||||| Sbjct: 27903 cgcattatggggactatctgtttcagaa 27876 Score = 103 bits (52), Expect = 7e-19 Identities = 67/72 (93%) Strand = Plus / Minus Query: 13 gctgtaggtcaggaagcaggggctcttgaggcattagtgcaactaacatgttctcaaaac 72 ||||| ||||||||||||||||||||||||||||||||||| |||||| | |||||||| Sbjct: 28608 gctgtgggtcaggaagcaggggctcttgaggcattagtgcagctaacaagctctcaaaat 28549 Query: 73 gagggtgtaagg 84 |||||||||||| Sbjct: 28548 gagggtgtaagg 28537 Score = 99.6 bits (50), Expect = 1e-17 Identities = 65/70 (92%) Strand = Plus / Minus Query: 533 catcagagggcagttccaaaggtgttaatgtcgagggagctagaagaatggctttgaagc 592 ||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||| Sbjct: 24205 catcagagggcagttccaagagtgttaatgttgagggagctaggagaatggctttgaagc 24146 Query: 593 atatagagac 602 ||||| |||| Sbjct: 24145 atatacagac 24136 Score = 89.7 bits (45), Expect = 1e-14 Identities = 78/89 (87%) Strand = Plus / Minus Query: 85 caagaggctgctggtgctttgtggaacctatcatttgatgataggaatcgtgaagctatt 144 ||||| |||||||||||| ||||||| || |||||||||||||| || ||||||| ||| Sbjct: 28427 caagaagctgctggtgctctgtggaatctgtcatttgatgatagaaaccgtgaaggcatt 28368 Query: 145 gctgctgcagggggcgttgaagcattggt 173 |||||||| || ||||||||||| ||||| Sbjct: 28367 gctgctgcgggtggcgttgaagctttggt 28339 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 271 gcaattggacaggagggtggcgttgcaccattgcttacaatggcacagtcagaggttgaa 330 |||||||||||||||||||| || ||||| ||||| ||| ||||||| ||||| |||||| Sbjct: 26625 gcaattggacaggagggtggtgtcgcacctttgctcacactggcacaatcagatgttgaa 26566 Query: 331 g 331 | Sbjct: 26565 g 26565
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 182 bits (92), Expect = 9e-43 Identities = 155/176 (88%) Strand = Plus / Minus Query: 331 gatgttcatgagacagctgcaggggcattgtggaatcttgctttctattccagcaatgct 390 |||||||| |||||||||||||||||| | |||||||||||||||||||| | |||||| Sbjct: 21710815 gatgttcacgagacagctgcaggggcactatggaatcttgctttctattctggtaatgct 21710756 Query: 391 cagcgtatagttgaagaaggtggggtgcctatccttgtgcacctttgctcatcatcaggg 450 | |||| ||||||||||||||||| ||||| || |||| |||||||||||||||||| Sbjct: 21710755 ctctgtattgttgaagaaggtggggttcctattctagtgcggctttgctcatcatcaggg 21710696 Query: 451 tcaaagatggctcggttcatgtctgcgctagcccttgcctacatgtttgatggaag 506 ||||| ||||| || ||||||||||||||||||||||| || ||||| |||||||| Sbjct: 21710695 tcaaaaatggcacgtttcatgtctgcgctagcccttgcttatatgttcgatggaag 21710640 Score = 159 bits (80), Expect = 1e-35 Identities = 86/88 (97%) Strand = Plus / Minus Query: 171 ggtttcacttgcacaacaatgtctgaatgcttcggaaggccttcaggagagagctgctgg 230 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 21713280 ggtttcacttgcacaagaatgtttgaatgcttcggaaggccttcaggagagagctgctgg 21713221 Query: 231 cgcattatggggactatctgtttcagaa 258 |||||||||||||||||||||||||||| Sbjct: 21713220 cgcattatggggactatctgtttcagaa 21713193 Score = 103 bits (52), Expect = 7e-19 Identities = 67/72 (93%) Strand = Plus / Minus Query: 13 gctgtaggtcaggaagcaggggctcttgaggcattagtgcaactaacatgttctcaaaac 72 ||||| ||||||||||||||||||||||||||||||||||| |||||| | |||||||| Sbjct: 21713925 gctgtgggtcaggaagcaggggctcttgaggcattagtgcagctaacaagctctcaaaat 21713866 Query: 73 gagggtgtaagg 84 |||||||||||| Sbjct: 21713865 gagggtgtaagg 21713854 Score = 99.6 bits (50), Expect = 1e-17 Identities = 65/70 (92%) Strand = Plus / Minus Query: 533 catcagagggcagttccaaaggtgttaatgtcgagggagctagaagaatggctttgaagc 592 ||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||| Sbjct: 21709522 catcagagggcagttccaagagtgttaatgttgagggagctaggagaatggctttgaagc 21709463 Query: 593 atatagagac 602 ||||| |||| Sbjct: 21709462 atatacagac 21709453 Score = 89.7 bits (45), Expect = 1e-14 Identities = 78/89 (87%) Strand = Plus / Minus Query: 85 caagaggctgctggtgctttgtggaacctatcatttgatgataggaatcgtgaagctatt 144 ||||| |||||||||||| ||||||| || |||||||||||||| || ||||||| ||| Sbjct: 21713744 caagaagctgctggtgctctgtggaatctgtcatttgatgatagaaaccgtgaaggcatt 21713685 Query: 145 gctgctgcagggggcgttgaagcattggt 173 |||||||| || ||||||||||| ||||| Sbjct: 21713684 gctgctgcgggtggcgttgaagctttggt 21713656 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 271 gcaattggacaggagggtggcgttgcaccattgcttacaatggcacagtcagaggttgaa 330 |||||||||||||||||||| || ||||| ||||| ||| ||||||| ||||| |||||| Sbjct: 21711942 gcaattggacaggagggtggtgtcgcacctttgctcacactggcacaatcagatgttgaa 21711883 Query: 331 g 331 | Sbjct: 21711882 g 21711882
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 182 bits (92), Expect = 9e-43 Identities = 155/176 (88%) Strand = Plus / Minus Query: 331 gatgttcatgagacagctgcaggggcattgtggaatcttgctttctattccagcaatgct 390 |||||||| |||||||||||||||||| | |||||||||||||||||||| | |||||| Sbjct: 21722478 gatgttcacgagacagctgcaggggcactatggaatcttgctttctattctggtaatgct 21722419 Query: 391 cagcgtatagttgaagaaggtggggtgcctatccttgtgcacctttgctcatcatcaggg 450 | |||| ||||||||||||||||| ||||| || |||| |||||||||||||||||| Sbjct: 21722418 ctctgtattgttgaagaaggtggggttcctattctagtgcggctttgctcatcatcaggg 21722359 Query: 451 tcaaagatggctcggttcatgtctgcgctagcccttgcctacatgtttgatggaag 506 ||||| ||||| || ||||||||||||||||||||||| || ||||| |||||||| Sbjct: 21722358 tcaaaaatggcacgtttcatgtctgcgctagcccttgcttatatgttcgatggaag 21722303 Score = 159 bits (80), Expect = 1e-35 Identities = 86/88 (97%) Strand = Plus / Minus Query: 171 ggtttcacttgcacaacaatgtctgaatgcttcggaaggccttcaggagagagctgctgg 230 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 21724943 ggtttcacttgcacaagaatgtttgaatgcttcggaaggccttcaggagagagctgctgg 21724884 Query: 231 cgcattatggggactatctgtttcagaa 258 |||||||||||||||||||||||||||| Sbjct: 21724883 cgcattatggggactatctgtttcagaa 21724856 Score = 103 bits (52), Expect = 7e-19 Identities = 67/72 (93%) Strand = Plus / Minus Query: 13 gctgtaggtcaggaagcaggggctcttgaggcattagtgcaactaacatgttctcaaaac 72 ||||| ||||||||||||||||||||||||||||||||||| |||||| | |||||||| Sbjct: 21725588 gctgtgggtcaggaagcaggggctcttgaggcattagtgcagctaacaagctctcaaaat 21725529 Query: 73 gagggtgtaagg 84 |||||||||||| Sbjct: 21725528 gagggtgtaagg 21725517 Score = 99.6 bits (50), Expect = 1e-17 Identities = 65/70 (92%) Strand = Plus / Minus Query: 533 catcagagggcagttccaaaggtgttaatgtcgagggagctagaagaatggctttgaagc 592 ||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||| Sbjct: 21721185 catcagagggcagttccaagagtgttaatgttgagggagctaggagaatggctttgaagc 21721126 Query: 593 atatagagac 602 ||||| |||| Sbjct: 21721125 atatacagac 21721116 Score = 89.7 bits (45), Expect = 1e-14 Identities = 78/89 (87%) Strand = Plus / Minus Query: 85 caagaggctgctggtgctttgtggaacctatcatttgatgataggaatcgtgaagctatt 144 ||||| |||||||||||| ||||||| || |||||||||||||| || ||||||| ||| Sbjct: 21725407 caagaagctgctggtgctctgtggaatctgtcatttgatgatagaaaccgtgaaggcatt 21725348 Query: 145 gctgctgcagggggcgttgaagcattggt 173 |||||||| || ||||||||||| ||||| Sbjct: 21725347 gctgctgcgggtggcgttgaagctttggt 21725319 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 271 gcaattggacaggagggtggcgttgcaccattgcttacaatggcacagtcagaggttgaa 330 |||||||||||||||||||| || ||||| ||||| ||| ||||||| ||||| |||||| Sbjct: 21723605 gcaattggacaggagggtggtgtcgcacctttgctcacactggcacaatcagatgttgaa 21723546 Query: 331 g 331 | Sbjct: 21723545 g 21723545
>emb|AJ234557.1|HVU234557 Hordeum vulgare genomic DNA fragment; clone MWG0800 Length = 820 Score = 145 bits (73), Expect = 2e-31 Identities = 73/73 (100%) Strand = Plus / Plus Query: 12 ggctgtaggtcaggaagcaggggctcttgaggcattagtgcaactaacatgttctcaaaa 71 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 566 ggctgtaggtcaggaagcaggggctcttgaggcattagtgcaactaacatgttctcaaaa 625 Query: 72 cgagggtgtaagg 84 ||||||||||||| Sbjct: 626 cgagggtgtaagg 638 Score = 133 bits (67), Expect = 8e-28 Identities = 67/67 (100%) Strand = Plus / Plus Query: 82 aggcaagaggctgctggtgctttgtggaacctatcatttgatgataggaatcgtgaagct 141 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 754 aggcaagaggctgctggtgctttgtggaacctatcatttgatgataggaatcgtgaagct 813 Query: 142 attgctg 148 ||||||| Sbjct: 814 attgctg 820
>ref|NM_115899.2| Arabidopsis thaliana ubiquitin-protein ligase AT3G60350 mRNA, complete cds Length = 3722 Score = 50.1 bits (25), Expect = 0.009 Identities = 37/41 (90%) Strand = Plus / Plus Query: 238 tggggactatctgtttcagaatcgaacagcatcgcaattgg 278 |||||||||||||| |||||| | |||||||| |||||||| Sbjct: 2246 tggggactatctgtctcagaagcaaacagcattgcaattgg 2286 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 490 tacatgtttgatggaagaatggatga 515 ||||||||||||||||| |||||||| Sbjct: 2498 tacatgtttgatggaaggatggatga 2523
>ref|NM_130054.1| Arabidopsis thaliana ubiquitin-protein ligase AT2G44900 mRNA, complete cds Length = 2793 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 490 tacatgtttgatggaagaatggatga 515 ||||||||||||||||| |||||||| Sbjct: 2287 tacatgtttgatggaaggatggatga 2312
>gb|AY425095.1| Clusia gundlachii PHYC (PHYC) gene, partial cds Length = 1177 Score = 44.1 bits (22), Expect = 0.54 Identities = 28/30 (93%) Strand = Plus / Plus Query: 331 gatgttcatgagacagctgcaggggcattg 360 ||||||| || ||||||||||||||||||| Sbjct: 25 gatgttcctgtgacagctgcaggggcattg 54
>gb|AC159139.9| Mus musculus 10 BAC RP24-370M23 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 185202 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 16 gtaggtcaggaagcaggggct 36 ||||||||||||||||||||| Sbjct: 115082 gtaggtcaggaagcaggggct 115062
>emb|AJ965256.1| Dehalococcoides sp. CBDB1 complete genome Length = 1395502 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 565 gagggagctagaagaatggct 585 ||||||||||||||||||||| Sbjct: 468858 gagggagctagaagaatggct 468878
>emb|AL391646.12| Human DNA sequence from clone RP11-697G4 on chromosome 6 Contains the 5' end of the FOXO3A gene for forkhead box O3A, part of a novel gene and a pseudogene similar to SMT3, complete sequence Length = 72254 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 332 atgttcatgagacagctgcag 352 ||||||||||||||||||||| Sbjct: 33479 atgttcatgagacagctgcag 33459
>gb|AC153012.4| Mus musculus BAC clone RP23-302F19 from chromosome 9, complete sequence Length = 196764 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 478 ctagcccttgcctacatgttt 498 ||||||||||||||||||||| Sbjct: 161010 ctagcccttgcctacatgttt 161030
>gb|AC137584.4| Mus musculus BAC clone RP23-351O20 from 9, complete sequence Length = 197108 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 478 ctagcccttgcctacatgttt 498 ||||||||||||||||||||| Sbjct: 21887 ctagcccttgcctacatgttt 21907
>gb|AC170806.2| Mus musculus BAC clone RP24-363P6 from chromosome 8, complete sequence Length = 182564 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 gtaggtcaggaagcaggggct 36 ||||||||||||||||||||| Sbjct: 83388 gtaggtcaggaagcaggggct 83408
>gb|AC153494.25| Mus musculus 10 BAC RP23-345J24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 231991 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 tcgtgaagctattgctgctg 151 |||||||||||||||||||| Sbjct: 111259 tcgtgaagctattgctgctg 111240
>gb|AC147047.2| Mus musculus BAC clone RP23-97D19 from chromosome 6, complete sequence Length = 239653 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 acagtcagaggttgaagatg 334 |||||||||||||||||||| Sbjct: 101627 acagtcagaggttgaagatg 101646
>gb|AC122510.5| Mus musculus BAC clone RP24-445P13 from chromosome 6, complete sequence Length = 163800 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 acagtcagaggttgaagatg 334 |||||||||||||||||||| Sbjct: 128411 acagtcagaggttgaagatg 128430
>gb|AC116592.5| Mus musculus BAC clone RP24-90K3 from 2, complete sequence Length = 238657 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 ggccttcaggagagagctgc 227 |||||||||||||||||||| Sbjct: 44365 ggccttcaggagagagctgc 44384
>gb|DQ400116.1|DQ400116S1 Mus musculus strain C3H/HeJ GATA binding protein 3 (Gata3) gene, exon 1a Length = 619 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 ggccttcaggagagagctgc 227 |||||||||||||||||||| Sbjct: 349 ggccttcaggagagagctgc 368
>gb|DQ400108.1|DQ400108S1 Mus musculus strain A/J GATA binding protein 3 (Gata3) gene, exon 1a Length = 619 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 ggccttcaggagagagctgc 227 |||||||||||||||||||| Sbjct: 349 ggccttcaggagagagctgc 368
>dbj|AK020309.1| Mus musculus adult male epididymis cDNA, RIKEN full-length enriched library, clone:9230102O04 product:unclassifiable, full insert sequence Length = 738 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 ggccttcaggagagagctgc 227 |||||||||||||||||||| Sbjct: 384 ggccttcaggagagagctgc 403
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 209 gccttcaggagagagctgctggcg 232 |||||||||||||| ||||||||| Sbjct: 1683687 gccttcaggagagatctgctggcg 1683710
>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI, complete sequence Length = 1813164 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 ggaacctatcatttgatgat 126 |||||||||||||||||||| Sbjct: 1257492 ggaacctatcatttgatgat 1257511
>gb|AC154599.2| Mus musculus BAC clone RP23-250J9 from chromosome 17, complete sequence Length = 141431 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 tagttgaagaaggtggggtg 417 |||||||||||||||||||| Sbjct: 139125 tagttgaagaaggtggggtg 139106
>emb|AL928704.10| Mouse DNA sequence from clone RP23-393G10 on chromosome 2, complete sequence Length = 171715 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 ggccttcaggagagagctgc 227 |||||||||||||||||||| Sbjct: 10712 ggccttcaggagagagctgc 10693
>dbj|BS000035.1| Pan troglodytes chromosome 22 clone:PTB-089G12, map 22, complete sequences Length = 225055 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 496 tttgatggaagaatggatga 515 |||||||||||||||||||| Sbjct: 136488 tttgatggaagaatggatga 136469
>gb|AF200465.1|AF200465 Homo sapiens coxsackievirus and adenovirus receptor (CXADR) gene, complete cds; and ANA gene, partial cds Length = 121798 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 496 tttgatggaagaatggatga 515 |||||||||||||||||||| Sbjct: 10833 tttgatggaagaatggatga 10814
>ref|NM_212138.1| Eremothecium gossypii AFR455Wp (AFR455W), mRNA Length = 3564 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 ggaacctatcatttgatgat 126 |||||||||||||||||||| Sbjct: 2543 ggaacctatcatttgatgat 2562
>emb|BX255914.3| Zebrafish DNA sequence from clone CH211-212G7 in linkage group 20, complete sequence Length = 217957 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 tctgtttcagaatcgaacag 266 |||||||||||||||||||| Sbjct: 12539 tctgtttcagaatcgaacag 12558
>emb|BX649455.14| Zebrafish DNA sequence from clone CH211-151J12 in linkage group 4, complete sequence Length = 116689 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 491 acatgtttgatggaagaatggatg 514 |||||||||||||| ||||||||| Sbjct: 34981 acatgtttgatggatgaatggatg 34958
>gb|AY105606.1| Zea mays PCO105510 mRNA sequence Length = 854 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 575 gaagaatggctttgaagcatatagagaccttt 606 ||||||| || || |||||||||||||||||| Sbjct: 1 gaagaatagcatttaagcatatagagaccttt 32
>dbj|AP001670.1| Homo sapiens genomic DNA, chromosome 21q, section 14/105 Length = 340000 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 496 tttgatggaagaatggatga 515 |||||||||||||||||||| Sbjct: 123404 tttgatggaagaatggatga 123385
>emb|CT027993.6| Mouse DNA sequence from clone RP24-82E21 on chromosome 17, complete sequence Length = 241014 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 tagttgaagaaggtggggtg 417 |||||||||||||||||||| Sbjct: 42308 tagttgaagaaggtggggtg 42289
>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome Length = 4303871 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 477 gctagcccttgcctacatgtttgatgga 504 ||||||||||||| |||| ||||||||| Sbjct: 2253068 gctagcccttgcccacatttttgatgga 2253095
>gb|AC170901.3| Mus musculus BAC clone RP23-318L14 from chromosome 17, complete sequence Length = 207623 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 tagttgaagaaggtggggtg 417 |||||||||||||||||||| Sbjct: 81479 tagttgaagaaggtggggtg 81498
>dbj|AP000963.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B827P19, LL56-APP region, complete sequence Length = 61926 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 496 tttgatggaagaatggatga 515 |||||||||||||||||||| Sbjct: 31794 tttgatggaagaatggatga 31775 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,406,935 Number of Sequences: 3902068 Number of extensions: 5406935 Number of successful extensions: 112944 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 112757 Number of HSP's gapped (non-prelim): 185 length of query: 624 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 601 effective length of database: 17,143,297,704 effective search space: 10303121920104 effective search space used: 10303121920104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)