ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd13f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK072816.1| Oryza sativa (japonica cultivar-group) cDNA clon... 664 0.0
2gb|BT016771.1| Zea mays clone Contig604 mRNA sequence 466 e-128
3ref|NM_197764.1| Oryza sativa (japonica cultivar-group) putative... 337 3e-89
4gb|AC084763.4| Oryza sativa chromosome 10 BAC OSJNBa0027P10 geno... 182 9e-43
5dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 182 9e-43
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 182 9e-43
7emb|AJ234557.1|HVU234557 Hordeum vulgare genomic DNA fragment; c... 145 2e-31
8ref|NM_115899.2| Arabidopsis thaliana ubiquitin-protein ligase A... 50 0.009
9ref|NM_130054.1| Arabidopsis thaliana ubiquitin-protein ligase A... 44 0.54
10gb|AY425095.1| Clusia gundlachii PHYC (PHYC) gene, partial cds 44 0.54
11gb|AC159139.9| Mus musculus 10 BAC RP24-370M23 (Roswell Park Can... 42 2.2
12emb|AJ965256.1| Dehalococcoides sp. CBDB1 complete genome 42 2.2
13emb|AL391646.12| Human DNA sequence from clone RP11-697G4 on chr... 42 2.2
14gb|AC153012.4| Mus musculus BAC clone RP23-302F19 from chromosom... 42 2.2
15gb|AC137584.4| Mus musculus BAC clone RP23-351O20 from 9, comple... 42 2.2
16gb|AC170806.2| Mus musculus BAC clone RP24-363P6 from chromosome... 42 2.2
17gb|AC153494.25| Mus musculus 10 BAC RP23-345J24 (Roswell Park Ca... 40 8.5
18gb|AC147047.2| Mus musculus BAC clone RP23-97D19 from chromosome... 40 8.5
19gb|AC122510.5| Mus musculus BAC clone RP24-445P13 from chromosom... 40 8.5
20gb|AC116592.5| Mus musculus BAC clone RP24-90K3 from 2, complete... 40 8.5
21gb|DQ400116.1|DQ400116S1 Mus musculus strain C3H/HeJ GATA bindin... 40 8.5
22gb|DQ400108.1|DQ400108S1 Mus musculus strain A/J GATA binding pr... 40 8.5
23dbj|AK020309.1| Mus musculus adult male epididymis cDNA, RIKEN f... 40 8.5
24gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 40 8.5
25gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 8.5
26gb|AC154599.2| Mus musculus BAC clone RP23-250J9 from chromosome... 40 8.5
27emb|AL928704.10| Mouse DNA sequence from clone RP23-393G10 on ch... 40 8.5
28dbj|BS000035.1| Pan troglodytes chromosome 22 clone:PTB-089G12, ... 40 8.5
29gb|AF200465.1|AF200465 Homo sapiens coxsackievirus and adenoviru... 40 8.5
30ref|NM_212138.1| Eremothecium gossypii AFR455Wp (AFR455W), mRNA 40 8.5
31emb|BX255914.3| Zebrafish DNA sequence from clone CH211-212G7 in... 40 8.5
32emb|BX649455.14| Zebrafish DNA sequence from clone CH211-151J12 ... 40 8.5
33gb|AY105606.1| Zea mays PCO105510 mRNA sequence 40 8.5
34dbj|AP001670.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 8.5
35emb|CT027993.6| Mouse DNA sequence from clone RP24-82E21 on chro... 40 8.5
36dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome 40 8.5
37gb|AC170901.3| Mus musculus BAC clone RP23-318L14 from chromosom... 40 8.5
38dbj|AP000963.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 8.5

>dbj|AK072816.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143J11, full
            insert sequence
          Length = 2296

 Score =  664 bits (335), Expect = 0.0
 Identities = 529/593 (89%), Gaps = 3/593 (0%)
 Strand = Plus / Plus

                                                                        
Query: 13   gctgtaggtcaggaagcaggggctcttgaggcattagtgcaactaacatgttctcaaaac 72
            ||||| ||||||||||||||||||||||||||||||||||| |||||| | |||||||| 
Sbjct: 812  gctgtgggtcaggaagcaggggctcttgaggcattagtgcagctaacaagctctcaaaat 871

                                                                        
Query: 73   gagggtgtaaggcaagaggctgctggtgctttgtggaacctatcatttgatgataggaat 132
            ||||||||||| ||||| |||||||||||| ||||||| || |||||||||||||| || 
Sbjct: 872  gagggtgtaagacaagaagctgctggtgctctgtggaatctgtcatttgatgatagaaac 931

                                                                        
Query: 133  cgtgaagctattgctgctgcagggggcgttgaagcattggtttcacttgcacaacaatgt 192
            |||||||  ||||||||||| || ||||||||||| |||||||||||||||||| |||||
Sbjct: 932  cgtgaaggcattgctgctgcgggtggcgttgaagctttggtttcacttgcacaagaatgt 991

                                                                        
Query: 193  ctgaatgcttcggaaggccttcaggagagagctgctggcgcattatggggactatctgtt 252
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992  ttgaatgcttcggaaggccttcaggagagagctgctggcgcattatggggactatctgtt 1051

                                                                        
Query: 253  tcagaatcgaacagcatcgcaattggacaggagggtggcgttgcaccattgcttacaatg 312
            |||||| | ||||| || |||||||||||||||||||| || ||||| ||||| ||| ||
Sbjct: 1052 tcagaagctaacagtatggcaattggacaggagggtggtgtcgcacctttgctcacactg 1111

                                                                        
Query: 313  gcacagtcagaggttgaagatgttcatgagacagctgcaggggcattgtggaatcttgct 372
            ||||| ||||| |||||||||||||| |||||||||||||||||| | ||||||||||||
Sbjct: 1112 gcacaatcagatgttgaagatgttcacgagacagctgcaggggcactatggaatcttgct 1171

                                                                        
Query: 373  ttctattccagcaatgctcagcgtatagttgaagaaggtggggtgcctatccttgtgcac 432
            ||||||||  | |||||||   |||| ||||||||||||||||| ||||| || ||||  
Sbjct: 1172 ttctattctggtaatgctctctgtattgttgaagaaggtggggttcctattctagtgcgg 1231

                                                                        
Query: 433  ctttgctcatcatcagggtcaaagatggctcggttcatgtctgcgctagcccttgcctac 492
            ||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| || 
Sbjct: 1232 ctttgctcatcatcagggtcaaaaatggcacgtttcatgtctgcgctagcccttgcttat 1291

                                                                        
Query: 493  atgtttgatggaagaatggatgaggccgccattgttggga---catcagagggcagttcc 549
            ||||| |||||||||||||||||||  ||  | |||||||   |||||||||||||||||
Sbjct: 1292 atgttcgatggaagaatggatgaggttgcattggttgggacgtcatcagagggcagttcc 1351

                                                                 
Query: 550  aaaggtgttaatgtcgagggagctagaagaatggctttgaagcatatagagac 602
            ||  |||||||||| ||||||||||| ||||||||||||||||||||| ||||
Sbjct: 1352 aagagtgttaatgttgagggagctaggagaatggctttgaagcatatacagac 1404



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>gb|BT016771.1| Zea mays clone Contig604 mRNA sequence
          Length = 1517

 Score =  466 bits (235), Expect = e-128
 Identities = 507/597 (84%), Gaps = 3/597 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  gctgtaggtcaggaagcaggggctcttgaggcattagtgcaactaacatgttctcaaaac 72
           ||||||||||||||||||||||| || |||||| | |||||||||||| |||||||||||
Sbjct: 21  gctgtaggtcaggaagcaggggccctggaggcactggtgcaactaacaagttctcaaaac 80

                                                                       
Query: 73  gagggtgtaaggcaagaggctgctggtgctttgtggaacctatcatttgatgataggaat 132
           ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| || || 
Sbjct: 81  gagggtgtaagacaagaagctgctggtgctttgtggaacctgtcatttgatgacagaaac 140

                                                                       
Query: 133 cgtgaagctattgctgctgcagggggcgttgaagcattggtttcacttgcacaacaatgt 192
           |||||||| |||||||| |  || ||||||||||| |||||| | || |  |||||||||
Sbjct: 141 cgtgaagccattgctgcagtgggtggcgttgaagctttggttgccctagtgcaacaatgt 200

                                                                       
Query: 193 ctgaatgcttcggaaggccttcaggagagagctgctggcgcattatggggactatctgtt 252
            |||||||||| ||||| |||||||||||||||||||| ||||| |||||| ||||||||
Sbjct: 201 ttgaatgcttcagaaggtcttcaggagagagctgctggtgcattgtggggattatctgtt 260

                                                                       
Query: 253 tcagaatcgaacagcatcgcaattggacaggagggtggcgttgcaccattgcttacaatg 312
           |||||| | || ||||| |||||||| ||||  ||||| |||||||||||||| ||| ||
Sbjct: 261 tcagaagctaatagcattgcaattgggcagggtggtggggttgcaccattgctcacattg 320

                                                                       
Query: 313 gcacagtcagaggttgaagatgttcatgagacagctgcaggggcattgtggaatcttgct 372
           ||||  |||||||||||||||||||| |||||||||||||||||| | ||||||||||| 
Sbjct: 321 gcacgctcagaggttgaagatgttcacgagacagctgcaggggcactatggaatcttgca 380

                                                                       
Query: 373 ttctattccagcaatgctcagcgtatagttgaagaaggtggggtgcctatccttgtgcac 432
           || |||||  | |||||||  || ||||| |||||||| ||||| ||| | |||||  | 
Sbjct: 381 ttttattctggtaatgctctccgcatagtcgaagaaggcggggttcctgttcttgtaaaa 440

                                                                       
Query: 433 ctttgctcatcatcagggtcaaagatggctcggttcatgtctgcgctagcccttgcctac 492
            |||||||||||||| |||| |||||||| || ||||||||||| ||||| || || || 
Sbjct: 441 atttgctcatcatcacggtccaagatggcacgtttcatgtctgcactagcactagcatat 500

                                                                       
Query: 493 atgtttgatggaagaatggatgaggccgccattgttgggaca---tcagagggcagttcc 549
           |||||||| |||||||||||||| |  ||  | |||||  ||   |||||  ||||||||
Sbjct: 501 atgtttgacggaagaatggatgaagttgctttggttggagcatcctcagatagcagttcc 560

                                                                    
Query: 550 aaaggtgttaatgtcgagggagctagaagaatggctttgaagcatatagagaccttt 606
           ||  |||||||||| ||||||||||||||||| || || ||||||||||| ||||||
Sbjct: 561 aagagtgttaatgttgagggagctagaagaatagcatttaagcatatagaaaccttt 617



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>ref|NM_197764.1| Oryza sativa (japonica cultivar-group) putative arm repeat protein
            (OSJNBa0027P10.11), mRNA
          Length = 2540

 Score =  337 bits (170), Expect = 3e-89
 Identities = 227/246 (92%)
 Strand = Plus / Plus

                                                                        
Query: 13   gctgtaggtcaggaagcaggggctcttgaggcattagtgcaactaacatgttctcaaaac 72
            ||||| ||||||||||||||||||||||||||||||||||| |||||| | |||||||| 
Sbjct: 1849 gctgtgggtcaggaagcaggggctcttgaggcattagtgcagctaacaagctctcaaaat 1908

                                                                        
Query: 73   gagggtgtaaggcaagaggctgctggtgctttgtggaacctatcatttgatgataggaat 132
            ||||||||||| ||||| |||||||||||| ||||||| || |||||||||||||| || 
Sbjct: 1909 gagggtgtaagacaagaagctgctggtgctctgtggaatctgtcatttgatgatagaaac 1968

                                                                        
Query: 133  cgtgaagctattgctgctgcagggggcgttgaagcattggtttcacttgcacaacaatgt 192
            |||||||  ||||||||||| || ||||||||||| |||||||||||||||||| |||||
Sbjct: 1969 cgtgaaggcattgctgctgcgggtggcgttgaagctttggtttcacttgcacaagaatgt 2028

                                                                        
Query: 193  ctgaatgcttcggaaggccttcaggagagagctgctggcgcattatggggactatctgtt 252
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2029 ttgaatgcttcggaaggccttcaggagagagctgctggcgcattatggggactatctgtt 2088

                  
Query: 253  tcagaa 258
            ||||||
Sbjct: 2089 tcagaa 2094



 Score =  182 bits (92), Expect = 9e-43
 Identities = 155/176 (88%)
 Strand = Plus / Plus

                                                                        
Query: 331  gatgttcatgagacagctgcaggggcattgtggaatcttgctttctattccagcaatgct 390
            |||||||| |||||||||||||||||| | ||||||||||||||||||||  | ||||||
Sbjct: 2364 gatgttcacgagacagctgcaggggcactatggaatcttgctttctattctggtaatgct 2423

                                                                        
Query: 391  cagcgtatagttgaagaaggtggggtgcctatccttgtgcacctttgctcatcatcaggg 450
            |   |||| ||||||||||||||||| ||||| || ||||  ||||||||||||||||||
Sbjct: 2424 ctctgtattgttgaagaaggtggggttcctattctagtgcggctttgctcatcatcaggg 2483

                                                                    
Query: 451  tcaaagatggctcggttcatgtctgcgctagcccttgcctacatgtttgatggaag 506
            ||||| ||||| || ||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 2484 tcaaaaatggcacgtttcatgtctgcgctagcccttgcttatatgttcgatggaag 2539



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                        
Query: 271  gcaattggacaggagggtggcgttgcaccattgcttacaatggcacagtcagaggttgaa 330
            |||||||||||||||||||| || ||||| ||||| ||| ||||||| ||||| ||||||
Sbjct: 2182 gcaattggacaggagggtggtgtcgcacctttgctcacactggcacaatcagatgttgaa 2241

              
Query: 331  ga 332
            ||
Sbjct: 2242 ga 2243



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>gb|AC084763.4| Oryza sativa chromosome 10 BAC OSJNBa0027P10 genomic sequence, complete
             sequence
          Length = 141307

 Score =  182 bits (92), Expect = 9e-43
 Identities = 155/176 (88%)
 Strand = Plus / Minus

                                                                         
Query: 331   gatgttcatgagacagctgcaggggcattgtggaatcttgctttctattccagcaatgct 390
             |||||||| |||||||||||||||||| | ||||||||||||||||||||  | ||||||
Sbjct: 25498 gatgttcacgagacagctgcaggggcactatggaatcttgctttctattctggtaatgct 25439

                                                                         
Query: 391   cagcgtatagttgaagaaggtggggtgcctatccttgtgcacctttgctcatcatcaggg 450
             |   |||| ||||||||||||||||| ||||| || ||||  ||||||||||||||||||
Sbjct: 25438 ctctgtattgttgaagaaggtggggttcctattctagtgcggctttgctcatcatcaggg 25379

                                                                     
Query: 451   tcaaagatggctcggttcatgtctgcgctagcccttgcctacatgtttgatggaag 506
             ||||| ||||| || ||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 25378 tcaaaaatggcacgtttcatgtctgcgctagcccttgcttatatgttcgatggaag 25323



 Score =  159 bits (80), Expect = 1e-35
 Identities = 86/88 (97%)
 Strand = Plus / Minus

                                                                         
Query: 171   ggtttcacttgcacaacaatgtctgaatgcttcggaaggccttcaggagagagctgctgg 230
             |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 27963 ggtttcacttgcacaagaatgtttgaatgcttcggaaggccttcaggagagagctgctgg 27904

                                         
Query: 231   cgcattatggggactatctgtttcagaa 258
             ||||||||||||||||||||||||||||
Sbjct: 27903 cgcattatggggactatctgtttcagaa 27876



 Score =  103 bits (52), Expect = 7e-19
 Identities = 67/72 (93%)
 Strand = Plus / Minus

                                                                         
Query: 13    gctgtaggtcaggaagcaggggctcttgaggcattagtgcaactaacatgttctcaaaac 72
             ||||| ||||||||||||||||||||||||||||||||||| |||||| | |||||||| 
Sbjct: 28608 gctgtgggtcaggaagcaggggctcttgaggcattagtgcagctaacaagctctcaaaat 28549

                         
Query: 73    gagggtgtaagg 84
             ||||||||||||
Sbjct: 28548 gagggtgtaagg 28537



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 65/70 (92%)
 Strand = Plus / Minus

                                                                         
Query: 533   catcagagggcagttccaaaggtgttaatgtcgagggagctagaagaatggctttgaagc 592
             |||||||||||||||||||  |||||||||| ||||||||||| ||||||||||||||||
Sbjct: 24205 catcagagggcagttccaagagtgttaatgttgagggagctaggagaatggctttgaagc 24146

                       
Query: 593   atatagagac 602
             ||||| ||||
Sbjct: 24145 atatacagac 24136



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 78/89 (87%)
 Strand = Plus / Minus

                                                                         
Query: 85    caagaggctgctggtgctttgtggaacctatcatttgatgataggaatcgtgaagctatt 144
             ||||| |||||||||||| ||||||| || |||||||||||||| || |||||||  |||
Sbjct: 28427 caagaagctgctggtgctctgtggaatctgtcatttgatgatagaaaccgtgaaggcatt 28368

                                          
Query: 145   gctgctgcagggggcgttgaagcattggt 173
             |||||||| || ||||||||||| |||||
Sbjct: 28367 gctgctgcgggtggcgttgaagctttggt 28339



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                         
Query: 271   gcaattggacaggagggtggcgttgcaccattgcttacaatggcacagtcagaggttgaa 330
             |||||||||||||||||||| || ||||| ||||| ||| ||||||| ||||| ||||||
Sbjct: 26625 gcaattggacaggagggtggtgtcgcacctttgctcacactggcacaatcagatgttgaa 26566

              
Query: 331   g 331
             |
Sbjct: 26565 g 26565



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  182 bits (92), Expect = 9e-43
 Identities = 155/176 (88%)
 Strand = Plus / Minus

                                                                            
Query: 331      gatgttcatgagacagctgcaggggcattgtggaatcttgctttctattccagcaatgct 390
                |||||||| |||||||||||||||||| | ||||||||||||||||||||  | ||||||
Sbjct: 21710815 gatgttcacgagacagctgcaggggcactatggaatcttgctttctattctggtaatgct 21710756

                                                                            
Query: 391      cagcgtatagttgaagaaggtggggtgcctatccttgtgcacctttgctcatcatcaggg 450
                |   |||| ||||||||||||||||| ||||| || ||||  ||||||||||||||||||
Sbjct: 21710755 ctctgtattgttgaagaaggtggggttcctattctagtgcggctttgctcatcatcaggg 21710696

                                                                        
Query: 451      tcaaagatggctcggttcatgtctgcgctagcccttgcctacatgtttgatggaag 506
                ||||| ||||| || ||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 21710695 tcaaaaatggcacgtttcatgtctgcgctagcccttgcttatatgttcgatggaag 21710640



 Score =  159 bits (80), Expect = 1e-35
 Identities = 86/88 (97%)
 Strand = Plus / Minus

                                                                            
Query: 171      ggtttcacttgcacaacaatgtctgaatgcttcggaaggccttcaggagagagctgctgg 230
                |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 21713280 ggtttcacttgcacaagaatgtttgaatgcttcggaaggccttcaggagagagctgctgg 21713221

                                            
Query: 231      cgcattatggggactatctgtttcagaa 258
                ||||||||||||||||||||||||||||
Sbjct: 21713220 cgcattatggggactatctgtttcagaa 21713193



 Score =  103 bits (52), Expect = 7e-19
 Identities = 67/72 (93%)
 Strand = Plus / Minus

                                                                            
Query: 13       gctgtaggtcaggaagcaggggctcttgaggcattagtgcaactaacatgttctcaaaac 72
                ||||| ||||||||||||||||||||||||||||||||||| |||||| | |||||||| 
Sbjct: 21713925 gctgtgggtcaggaagcaggggctcttgaggcattagtgcagctaacaagctctcaaaat 21713866

                            
Query: 73       gagggtgtaagg 84
                ||||||||||||
Sbjct: 21713865 gagggtgtaagg 21713854



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 65/70 (92%)
 Strand = Plus / Minus

                                                                            
Query: 533      catcagagggcagttccaaaggtgttaatgtcgagggagctagaagaatggctttgaagc 592
                |||||||||||||||||||  |||||||||| ||||||||||| ||||||||||||||||
Sbjct: 21709522 catcagagggcagttccaagagtgttaatgttgagggagctaggagaatggctttgaagc 21709463

                          
Query: 593      atatagagac 602
                ||||| ||||
Sbjct: 21709462 atatacagac 21709453



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 78/89 (87%)
 Strand = Plus / Minus

                                                                            
Query: 85       caagaggctgctggtgctttgtggaacctatcatttgatgataggaatcgtgaagctatt 144
                ||||| |||||||||||| ||||||| || |||||||||||||| || |||||||  |||
Sbjct: 21713744 caagaagctgctggtgctctgtggaatctgtcatttgatgatagaaaccgtgaaggcatt 21713685

                                             
Query: 145      gctgctgcagggggcgttgaagcattggt 173
                |||||||| || ||||||||||| |||||
Sbjct: 21713684 gctgctgcgggtggcgttgaagctttggt 21713656



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                            
Query: 271      gcaattggacaggagggtggcgttgcaccattgcttacaatggcacagtcagaggttgaa 330
                |||||||||||||||||||| || ||||| ||||| ||| ||||||| ||||| ||||||
Sbjct: 21711942 gcaattggacaggagggtggtgtcgcacctttgctcacactggcacaatcagatgttgaa 21711883

                 
Query: 331      g 331
                |
Sbjct: 21711882 g 21711882



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  182 bits (92), Expect = 9e-43
 Identities = 155/176 (88%)
 Strand = Plus / Minus

                                                                            
Query: 331      gatgttcatgagacagctgcaggggcattgtggaatcttgctttctattccagcaatgct 390
                |||||||| |||||||||||||||||| | ||||||||||||||||||||  | ||||||
Sbjct: 21722478 gatgttcacgagacagctgcaggggcactatggaatcttgctttctattctggtaatgct 21722419

                                                                            
Query: 391      cagcgtatagttgaagaaggtggggtgcctatccttgtgcacctttgctcatcatcaggg 450
                |   |||| ||||||||||||||||| ||||| || ||||  ||||||||||||||||||
Sbjct: 21722418 ctctgtattgttgaagaaggtggggttcctattctagtgcggctttgctcatcatcaggg 21722359

                                                                        
Query: 451      tcaaagatggctcggttcatgtctgcgctagcccttgcctacatgtttgatggaag 506
                ||||| ||||| || ||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 21722358 tcaaaaatggcacgtttcatgtctgcgctagcccttgcttatatgttcgatggaag 21722303



 Score =  159 bits (80), Expect = 1e-35
 Identities = 86/88 (97%)
 Strand = Plus / Minus

                                                                            
Query: 171      ggtttcacttgcacaacaatgtctgaatgcttcggaaggccttcaggagagagctgctgg 230
                |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 21724943 ggtttcacttgcacaagaatgtttgaatgcttcggaaggccttcaggagagagctgctgg 21724884

                                            
Query: 231      cgcattatggggactatctgtttcagaa 258
                ||||||||||||||||||||||||||||
Sbjct: 21724883 cgcattatggggactatctgtttcagaa 21724856



 Score =  103 bits (52), Expect = 7e-19
 Identities = 67/72 (93%)
 Strand = Plus / Minus

                                                                            
Query: 13       gctgtaggtcaggaagcaggggctcttgaggcattagtgcaactaacatgttctcaaaac 72
                ||||| ||||||||||||||||||||||||||||||||||| |||||| | |||||||| 
Sbjct: 21725588 gctgtgggtcaggaagcaggggctcttgaggcattagtgcagctaacaagctctcaaaat 21725529

                            
Query: 73       gagggtgtaagg 84
                ||||||||||||
Sbjct: 21725528 gagggtgtaagg 21725517



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 65/70 (92%)
 Strand = Plus / Minus

                                                                            
Query: 533      catcagagggcagttccaaaggtgttaatgtcgagggagctagaagaatggctttgaagc 592
                |||||||||||||||||||  |||||||||| ||||||||||| ||||||||||||||||
Sbjct: 21721185 catcagagggcagttccaagagtgttaatgttgagggagctaggagaatggctttgaagc 21721126

                          
Query: 593      atatagagac 602
                ||||| ||||
Sbjct: 21721125 atatacagac 21721116



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 78/89 (87%)
 Strand = Plus / Minus

                                                                            
Query: 85       caagaggctgctggtgctttgtggaacctatcatttgatgataggaatcgtgaagctatt 144
                ||||| |||||||||||| ||||||| || |||||||||||||| || |||||||  |||
Sbjct: 21725407 caagaagctgctggtgctctgtggaatctgtcatttgatgatagaaaccgtgaaggcatt 21725348

                                             
Query: 145      gctgctgcagggggcgttgaagcattggt 173
                |||||||| || ||||||||||| |||||
Sbjct: 21725347 gctgctgcgggtggcgttgaagctttggt 21725319



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                            
Query: 271      gcaattggacaggagggtggcgttgcaccattgcttacaatggcacagtcagaggttgaa 330
                |||||||||||||||||||| || ||||| ||||| ||| ||||||| ||||| ||||||
Sbjct: 21723605 gcaattggacaggagggtggtgtcgcacctttgctcacactggcacaatcagatgttgaa 21723546

                 
Query: 331      g 331
                |
Sbjct: 21723545 g 21723545



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>emb|AJ234557.1|HVU234557 Hordeum vulgare genomic DNA fragment; clone MWG0800
          Length = 820

 Score =  145 bits (73), Expect = 2e-31
 Identities = 73/73 (100%)
 Strand = Plus / Plus

                                                                       
Query: 12  ggctgtaggtcaggaagcaggggctcttgaggcattagtgcaactaacatgttctcaaaa 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ggctgtaggtcaggaagcaggggctcttgaggcattagtgcaactaacatgttctcaaaa 625

                        
Query: 72  cgagggtgtaagg 84
           |||||||||||||
Sbjct: 626 cgagggtgtaagg 638



 Score =  133 bits (67), Expect = 8e-28
 Identities = 67/67 (100%)
 Strand = Plus / Plus

                                                                       
Query: 82  aggcaagaggctgctggtgctttgtggaacctatcatttgatgataggaatcgtgaagct 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 aggcaagaggctgctggtgctttgtggaacctatcatttgatgataggaatcgtgaagct 813

                  
Query: 142 attgctg 148
           |||||||
Sbjct: 814 attgctg 820



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>ref|NM_115899.2| Arabidopsis thaliana ubiquitin-protein ligase AT3G60350 mRNA,
            complete cds
          Length = 3722

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                     
Query: 238  tggggactatctgtttcagaatcgaacagcatcgcaattgg 278
            |||||||||||||| |||||| | |||||||| ||||||||
Sbjct: 2246 tggggactatctgtctcagaagcaaacagcattgcaattgg 2286



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 490  tacatgtttgatggaagaatggatga 515
            ||||||||||||||||| ||||||||
Sbjct: 2498 tacatgtttgatggaaggatggatga 2523



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>ref|NM_130054.1| Arabidopsis thaliana ubiquitin-protein ligase AT2G44900 mRNA,
            complete cds
          Length = 2793

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 490  tacatgtttgatggaagaatggatga 515
            ||||||||||||||||| ||||||||
Sbjct: 2287 tacatgtttgatggaaggatggatga 2312



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>gb|AY425095.1| Clusia gundlachii PHYC (PHYC) gene, partial cds
          Length = 1177

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 331 gatgttcatgagacagctgcaggggcattg 360
           ||||||| || |||||||||||||||||||
Sbjct: 25  gatgttcctgtgacagctgcaggggcattg 54



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>gb|AC159139.9| Mus musculus 10 BAC RP24-370M23 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 185202

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 16     gtaggtcaggaagcaggggct 36
              |||||||||||||||||||||
Sbjct: 115082 gtaggtcaggaagcaggggct 115062



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>emb|AJ965256.1| Dehalococcoides sp. CBDB1 complete genome
          Length = 1395502

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 565    gagggagctagaagaatggct 585
              |||||||||||||||||||||
Sbjct: 468858 gagggagctagaagaatggct 468878



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>emb|AL391646.12| Human DNA sequence from clone RP11-697G4 on chromosome 6 Contains the
             5' end of the FOXO3A gene for forkhead box O3A, part of a
             novel gene and a pseudogene similar to SMT3, complete
             sequence
          Length = 72254

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 332   atgttcatgagacagctgcag 352
             |||||||||||||||||||||
Sbjct: 33479 atgttcatgagacagctgcag 33459



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>gb|AC153012.4| Mus musculus BAC clone RP23-302F19 from chromosome 9, complete sequence
          Length = 196764

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 478    ctagcccttgcctacatgttt 498
              |||||||||||||||||||||
Sbjct: 161010 ctagcccttgcctacatgttt 161030



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>gb|AC137584.4| Mus musculus BAC clone RP23-351O20 from 9, complete sequence
          Length = 197108

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 478   ctagcccttgcctacatgttt 498
             |||||||||||||||||||||
Sbjct: 21887 ctagcccttgcctacatgttt 21907



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>gb|AC170806.2| Mus musculus BAC clone RP24-363P6 from chromosome 8, complete sequence
          Length = 182564

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 16    gtaggtcaggaagcaggggct 36
             |||||||||||||||||||||
Sbjct: 83388 gtaggtcaggaagcaggggct 83408



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>gb|AC153494.25| Mus musculus 10 BAC RP23-345J24 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 231991

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 132    tcgtgaagctattgctgctg 151
              ||||||||||||||||||||
Sbjct: 111259 tcgtgaagctattgctgctg 111240



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>gb|AC147047.2| Mus musculus BAC clone RP23-97D19 from chromosome 6, complete sequence
          Length = 239653

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 315    acagtcagaggttgaagatg 334
              ||||||||||||||||||||
Sbjct: 101627 acagtcagaggttgaagatg 101646



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>gb|AC122510.5| Mus musculus BAC clone RP24-445P13 from chromosome 6, complete sequence
          Length = 163800

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 315    acagtcagaggttgaagatg 334
              ||||||||||||||||||||
Sbjct: 128411 acagtcagaggttgaagatg 128430



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>gb|AC116592.5| Mus musculus BAC clone RP24-90K3 from 2, complete sequence
          Length = 238657

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 208   ggccttcaggagagagctgc 227
             ||||||||||||||||||||
Sbjct: 44365 ggccttcaggagagagctgc 44384



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>gb|DQ400116.1|DQ400116S1 Mus musculus strain C3H/HeJ GATA binding protein 3 (Gata3) gene,
           exon 1a
          Length = 619

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 208 ggccttcaggagagagctgc 227
           ||||||||||||||||||||
Sbjct: 349 ggccttcaggagagagctgc 368



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>gb|DQ400108.1|DQ400108S1 Mus musculus strain A/J GATA binding protein 3 (Gata3) gene, exon
           1a
          Length = 619

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 208 ggccttcaggagagagctgc 227
           ||||||||||||||||||||
Sbjct: 349 ggccttcaggagagagctgc 368



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>dbj|AK020309.1| Mus musculus adult male epididymis cDNA, RIKEN full-length enriched
           library, clone:9230102O04 product:unclassifiable, full
           insert sequence
          Length = 738

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 208 ggccttcaggagagagctgc 227
           ||||||||||||||||||||
Sbjct: 384 ggccttcaggagagagctgc 403



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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 209     gccttcaggagagagctgctggcg 232
               |||||||||||||| |||||||||
Sbjct: 1683687 gccttcaggagagatctgctggcg 1683710



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>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI,
               complete sequence
          Length = 1813164

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 107     ggaacctatcatttgatgat 126
               ||||||||||||||||||||
Sbjct: 1257492 ggaacctatcatttgatgat 1257511



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>gb|AC154599.2| Mus musculus BAC clone RP23-250J9 from chromosome 17, complete sequence
          Length = 141431

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 398    tagttgaagaaggtggggtg 417
              ||||||||||||||||||||
Sbjct: 139125 tagttgaagaaggtggggtg 139106



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>emb|AL928704.10| Mouse DNA sequence from clone RP23-393G10 on chromosome 2, complete
             sequence
          Length = 171715

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 208   ggccttcaggagagagctgc 227
             ||||||||||||||||||||
Sbjct: 10712 ggccttcaggagagagctgc 10693



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>dbj|BS000035.1| Pan troglodytes chromosome 22 clone:PTB-089G12, map 22, complete
              sequences
          Length = 225055

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 496    tttgatggaagaatggatga 515
              ||||||||||||||||||||
Sbjct: 136488 tttgatggaagaatggatga 136469



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>gb|AF200465.1|AF200465 Homo sapiens coxsackievirus and adenovirus receptor (CXADR) gene,
             complete cds; and ANA gene, partial cds
          Length = 121798

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 496   tttgatggaagaatggatga 515
             ||||||||||||||||||||
Sbjct: 10833 tttgatggaagaatggatga 10814



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>ref|NM_212138.1| Eremothecium gossypii AFR455Wp (AFR455W), mRNA
          Length = 3564

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 107  ggaacctatcatttgatgat 126
            ||||||||||||||||||||
Sbjct: 2543 ggaacctatcatttgatgat 2562



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>emb|BX255914.3| Zebrafish DNA sequence from clone CH211-212G7 in linkage group 20,
             complete sequence
          Length = 217957

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   tctgtttcagaatcgaacag 266
             ||||||||||||||||||||
Sbjct: 12539 tctgtttcagaatcgaacag 12558



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>emb|BX649455.14| Zebrafish DNA sequence from clone CH211-151J12 in linkage group 4,
             complete sequence
          Length = 116689

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 491   acatgtttgatggaagaatggatg 514
             |||||||||||||| |||||||||
Sbjct: 34981 acatgtttgatggatgaatggatg 34958



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>gb|AY105606.1| Zea mays PCO105510 mRNA sequence
          Length = 854

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 575 gaagaatggctttgaagcatatagagaccttt 606
           ||||||| || || ||||||||||||||||||
Sbjct: 1   gaagaatagcatttaagcatatagagaccttt 32



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>dbj|AP001670.1| Homo sapiens genomic DNA, chromosome 21q, section 14/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 496    tttgatggaagaatggatga 515
              ||||||||||||||||||||
Sbjct: 123404 tttgatggaagaatggatga 123385



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>emb|CT027993.6| Mouse DNA sequence from clone RP24-82E21 on chromosome 17, complete
             sequence
          Length = 241014

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 398   tagttgaagaaggtggggtg 417
             ||||||||||||||||||||
Sbjct: 42308 tagttgaagaaggtggggtg 42289



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>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome
          Length = 4303871

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 477     gctagcccttgcctacatgtttgatgga 504
               ||||||||||||| |||| |||||||||
Sbjct: 2253068 gctagcccttgcccacatttttgatgga 2253095



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>gb|AC170901.3| Mus musculus BAC clone RP23-318L14 from chromosome 17, complete
             sequence
          Length = 207623

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 398   tagttgaagaaggtggggtg 417
             ||||||||||||||||||||
Sbjct: 81479 tagttgaagaaggtggggtg 81498



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>dbj|AP000963.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B827P19,
             LL56-APP region, complete sequence
          Length = 61926

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 496   tttgatggaagaatggatga 515
             ||||||||||||||||||||
Sbjct: 31794 tttgatggaagaatggatga 31775


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,406,935
Number of Sequences: 3902068
Number of extensions: 5406935
Number of successful extensions: 112944
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 112757
Number of HSP's gapped (non-prelim): 185
length of query: 624
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 601
effective length of database: 17,143,297,704
effective search space: 10303121920104
effective search space used: 10303121920104
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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