ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd13f06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY220738.1| Hordeum vulgare putative protease inhibitor (SD10... 180 3e-42
2emb|Y08625.1|HVSCI2 H.vulgare mRNA for subtilisin-chymotrypsin i... 180 3e-42
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
4dbj|AP002866.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
5emb|AL627166.6| Mouse DNA sequence from clone RP23-59N8 on chrom... 46 0.11
6emb|CT030417.1| Xenopus tropicalis finished cDNA, clone TEgg077h01 42 1.7
7emb|AL162571.9| Human DNA sequence from clone RP11-159J2 on chro... 42 1.7
8ref|NM_001016862.2| Xenopus tropicalis islet cell autoantigen 1,... 42 1.7
9emb|CR848653.2| Xenopus tropicalis finished cDNA, clone TGas051g12 42 1.7
10emb|AL935028.14| Zebrafish DNA sequence from clone XX-95K20, com... 42 1.7
11gb|BC068961.1| Xenopus laevis hypothetical protein MGC83241, mRN... 40 6.7
12emb|AL354738.13| Human DNA sequence from clone RP11-628O6 on chr... 40 6.7
13dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
14dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome 40 6.7
15dbj|AK120100.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.7
16ref|XM_316648.2| Anopheles gambiae str. PEST ENSANGP00000011462 ... 40 6.7
17gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.7
18emb|AL935126.18| Zebrafish DNA sequence from clone CH211-186J3, ... 40 6.7
19emb|AL713936.4|CNS07YPH Oryza sativa chromosome 12, . BAC OJ1057... 40 6.7

>gb|AY220738.1| Hordeum vulgare putative protease inhibitor (SD10) mRNA, complete
           cds
          Length = 509

 Score =  180 bits (91), Expect = 3e-42
 Identities = 118/127 (92%)
 Strand = Plus / Plus

                                                                       
Query: 72  cgtttgtcccattttgtttccaacatgagcaaaccatgcgacggtcccaagacggagtgg 131
           |||||||||||||| |||||||||||||||||  ||||||||||| ||||||||||||||
Sbjct: 49  cgtttgtcccatttcgtttccaacatgagcaagtcatgcgacggtgccaagacggagtgg 108

                                                                       
Query: 132 cctgagctggtcgggcgcacgatcgaggaggcgagagagaagatcaaggcggaccggccg 191
           ||||||||||||||| |||||||| ||||||| | ||| |||||||||||||||||||||
Sbjct: 109 cctgagctggtcgggtgcacgatcaaggaggccaaagaaaagatcaaggcggaccggccg 168

                  
Query: 192 gacctca 198
           |||||||
Sbjct: 169 gacctca 175



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>emb|Y08625.1|HVSCI2 H.vulgare mRNA for subtilisin-chymotrypsin inhibitor 2
          Length = 549

 Score =  180 bits (91), Expect = 3e-42
 Identities = 118/127 (92%)
 Strand = Plus / Plus

                                                                       
Query: 72  cgtttgtcccattttgtttccaacatgagcaaaccatgcgacggtcccaagacggagtgg 131
           |||||||||||||| |||||||||||||||||  ||||||||||| ||||||||||||||
Sbjct: 33  cgtttgtcccatttcgtttccaacatgagcaagtcatgcgacggtgccaagacggagtgg 92

                                                                       
Query: 132 cctgagctggtcgggcgcacgatcgaggaggcgagagagaagatcaaggcggaccggccg 191
           ||||||||||||||| |||||||| ||||||| | ||| |||||||||||||||||||||
Sbjct: 93  cctgagctggtcgggtgcacgatcaaggaggccaaagaaaagatcaaggcggaccggccg 152

                  
Query: 192 gacctca 198
           |||||||
Sbjct: 153 gacctca 159



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                            
Query: 117      cccaagacggagtggcctgagctggtcgggcgcacgatcgaggaggcgagagagaagatc 176
                ||||||||||||||||| ||||| ||  | || |||||| ||||||| |  |||||||||
Sbjct: 24387282 cccaagacggagtggcccgagctagtttgccggacgatcaaggaggccaaggagaagatc 24387223

                           
Query: 177      aaggcggaccg 187
                || || |||||
Sbjct: 24387222 aaagcagaccg 24387212



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>dbj|AP002866.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0410E01
          Length = 166753

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                          
Query: 117    cccaagacggagtggcctgagctggtcgggcgcacgatcgaggaggcgagagagaagatc 176
              ||||||||||||||||| ||||| ||  | || |||||| ||||||| |  |||||||||
Sbjct: 133186 cccaagacggagtggcccgagctagtttgccggacgatcaaggaggccaaggagaagatc 133127

                         
Query: 177    aaggcggaccg 187
              || || |||||
Sbjct: 133126 aaagcagaccg 133116



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>emb|AL627166.6| Mouse DNA sequence from clone RP23-59N8 on chromosome 4, complete
              sequence
          Length = 237007

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 393    gggtatgacctgaaaaatgtatg 415
              |||||||||||||||||||||||
Sbjct: 155986 gggtatgacctgaaaaatgtatg 155964



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>emb|CT030417.1| Xenopus tropicalis finished cDNA, clone TEgg077h01
          Length = 1513

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 428  catgttgttttgttgtgagtt 448
            |||||||||||||||||||||
Sbjct: 1080 catgttgttttgttgtgagtt 1100



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>emb|AL162571.9| Human DNA sequence from clone RP11-159J2 on chromosome 13 Contains a
            meningioma expressed antigen 6 (coiled-coil proline-rich)
            (MGEA6) pseudogene, a novel gene and the 3' end of the
            TBC1D4 gene for TBC1 domain family, member 4 (KIAA0603),
            complete sequence
          Length = 158310

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 333  aataaagacccatgcaagtct 353
            |||||||||||||||||||||
Sbjct: 6172 aataaagacccatgcaagtct 6192



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>ref|NM_001016862.2| Xenopus tropicalis islet cell autoantigen 1, 69kDa (ica1), mRNA
          Length = 2224

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 428  catgttgttttgttgtgagtt 448
            |||||||||||||||||||||
Sbjct: 1792 catgttgttttgttgtgagtt 1812



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>emb|CR848653.2| Xenopus tropicalis finished cDNA, clone TGas051g12
          Length = 2224

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 428  catgttgttttgttgtgagtt 448
            |||||||||||||||||||||
Sbjct: 1792 catgttgttttgttgtgagtt 1812



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>emb|AL935028.14| Zebrafish DNA sequence from clone XX-95K20, complete sequence
          Length = 78340

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 424   atgtcatgttgttttgttgtg 444
             |||||||||||||||||||||
Sbjct: 72956 atgtcatgttgttttgttgtg 72936



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>gb|BC068961.1| Xenopus laevis hypothetical protein MGC83241, mRNA (cDNA clone
            MGC:83241 IMAGE:6636263), complete cds
          Length = 2179

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 430  tgttgttttgttgtgagttg 449
            ||||||||||||||||||||
Sbjct: 1807 tgttgttttgttgtgagttg 1826



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>emb|AL354738.13| Human DNA sequence from clone RP11-628O6 on chromosome 9 Contains part
             of a novel gene (FLJ20276), complete sequence
          Length = 64981

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 395   gtatgacctgaaaaatgtat 414
             ||||||||||||||||||||
Sbjct: 29629 gtatgacctgaaaaatgtat 29610



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 85      ttgtttccaacatgagcaaa 104
               ||||||||||||||||||||
Sbjct: 3280462 ttgtttccaacatgagcaaa 3280481



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>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome
          Length = 2088737

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 234    cttgacttcaacgagaagcgcgtc 257
              ||||||||||||| ||||||||||
Sbjct: 152586 cttgacttcaacgtgaagcgcgtc 152609



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>dbj|AK120100.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013022J17, full
           insert sequence
          Length = 2018

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 85  ttgtttccaacatgagcaaa 104
           ||||||||||||||||||||
Sbjct: 674 ttgtttccaacatgagcaaa 693



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>ref|XM_316648.2| Anopheles gambiae str. PEST ENSANGP00000011462
           (ENSANGG00000008973), partial mRNA
          Length = 1680

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 151 cgatcgaggaggcgagagag 170
           ||||||||||||||||||||
Sbjct: 365 cgatcgaggaggcgagagag 384



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 85      ttgtttccaacatgagcaaa 104
               ||||||||||||||||||||
Sbjct: 3280407 ttgtttccaacatgagcaaa 3280426



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>emb|AL935126.18| Zebrafish DNA sequence from clone CH211-186J3, complete sequence
          Length = 174986

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 343   catgcaagtctccacatcat 362
             ||||||||||||||||||||
Sbjct: 21729 catgcaagtctccacatcat 21710



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>emb|AL713936.4|CNS07YPH Oryza sativa chromosome 12, . BAC OJ1057_G11 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 109081

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    ttgtttccaacatgagcaaa 104
             ||||||||||||||||||||
Sbjct: 70848 ttgtttccaacatgagcaaa 70867


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,925,787
Number of Sequences: 3902068
Number of extensions: 3925787
Number of successful extensions: 75128
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74988
Number of HSP's gapped (non-prelim): 140
length of query: 498
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 476
effective length of database: 17,147,199,772
effective search space: 8162067091472
effective search space used: 8162067091472
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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