| Clone Name | basd12p19 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_480917.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1014 Score = 305 bits (154), Expect = 1e-79 Identities = 421/510 (82%) Strand = Plus / Plus Query: 158 ctccggcctcgacaagatcgtgctccgcgacccgggccgcttcaccgccgaggtccgtct 217 ||||||| |||| ||| || | ||||||| | || || ||||| |||| |||||| ||| Sbjct: 114 ctccggcatcgagaaggtccttctccgcggcacgcgcggcttctccgctgaggtctatct 173 Query: 218 atatggagggcaagttacctcttggaagaatgaacagggggatgagttactttttgtaag 277 ||||||| ||||| ||||| ||||||||||| || | ||| ||||| |||||||| || Sbjct: 174 ttatggagctcaagtaacctcatggaagaatgaccatgcggaggagttgctttttgtcag 233 Query: 278 cagcaaggcagtttttaagtctccaggagcaattcgtggtggcatacccatttgctttcc 337 ||| ||||| |||| || ||||| ||| ||||||||||| |||||||||||||| || Sbjct: 234 cagtaaggctattttcaaacctccaaaagccattcgtggtgggatacccatttgcttccc 293 Query: 338 ccagtttggaacacatggaaatcttgaaaaacatggatttgcgaggaaccggctatggct 397 ||| |||||||||||||||||||||||| ||||||||||||| |||||||| ||||| Sbjct: 294 ccaatttggaacacatggaaatcttgaacaacatggatttgcaaggaaccgattatggac 353 Query: 398 cgttgatgataatcctccaccactcccagtaaacagcggtattaaaacttatgcagatct 457 ||||||||||||| ||||| | ||||||||| | ||||||| ||| || ||||| Sbjct: 354 tattgatgataatccaccacctttaccagtaaaccctgctattaaatcttttgttgatct 413 Query: 458 cattctgaagccttctgaagaagatctcaagatctggcctcacagatttgaattccgatt 517 ||||||| ||||||||| || ||| | ||||||||||||||||| ||||| ||||| || Sbjct: 414 gattctgaggccttctgacgaggatttaaagatctggcctcacagttttgagttccgctt 473 Query: 518 aagagtcgctcttggacccaaaggagaattgtttctcacttctcgaattagaaacaccaa 577 ||||| |||||||| || || || || ||| |||||||||||||||||| || ||||| Sbjct: 474 gagagttgctcttggtcctaatggggatttgagtctcacttctcgaattaggaataccaa 533 Query: 578 cactgatggaaaacccttctcatttacatttgcatatcatacatacttctccgtgtctga 637 ||||||||||| | | ||||| | |||||||||||||| ||||||||||| || ||||| Sbjct: 534 cactgatggaagatctttctcttacacatttgcatatcacacatacttctctgtctctga 593 Query: 638 cataagcgaagtacgtattgaagggctgga 667 ||| || ||||| ||| ||||||||||||| Sbjct: 594 catcagtgaagtgcgtgttgaagggctgga 623
>ref|XM_473781.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 978 Score = 226 bits (114), Expect = 7e-56 Identities = 237/278 (85%) Strand = Plus / Plus Query: 141 gagcgcaccaagggcccctccggcctcgacaagatcgtgctccgcgacccgggccgcttc 200 |||||| ||||||||||||| |||||||||||| ||||||||||||| || | | ||| Sbjct: 61 gagcgcgccaagggcccctcaggcctcgacaaggtcgtgctccgcgaggcgcggggattc 120 Query: 201 accgccgaggtccgtctatatggagggcaagttacctcttggaagaatgaacagggggat 260 |||| ||||||| | |||||||||| ||||| ||||||||||||||||| | |||||| Sbjct: 121 tccgcggaggtccatttatatggaggtcaagtgacctcttggaagaatgaccgtggggat 180 Query: 261 gagttactttttgtaagcagcaaggcagtttttaagtctccaggagcaattcgtggtggc 320 || ||||||||||||||||||||||| ||| ||| ||||| |||||| ||||||||| Sbjct: 181 gaattactttttgtaagcagcaaggccactttcaagcctccaaaagcaatccgtggtggc 240 Query: 321 atacccatttgctttccccagtttggaacacatggaaatcttgaaaaacatggatttgcg 380 |||||||||||||| ||||| ||||| || ||||||| |||||| |||||||||||||| Sbjct: 241 atacccatttgcttcccccaatttggcactcatggaattcttgagaaacatggatttgca 300 Query: 381 aggaaccggctatggctcgttgatgataatcctccacc 418 ||||| ||| | ||| ||||||||||||||||||| Sbjct: 301 aggaatcggttctgggctattgatgataatcctccacc 338 Score = 216 bits (109), Expect = 7e-53 Identities = 184/209 (88%) Strand = Plus / Plus Query: 453 gatctcattctgaagccttctgaagaagatctcaagatctggcctcacagatttgaattc 512 ||||| ||||||||| |||||||||||||||||||||| |||||||| || ||||||||| Sbjct: 373 gatcttattctgaagacttctgaagaagatctcaagatatggcctcatagctttgaattc 432 Query: 513 cgattaagagtcgctcttggacccaaaggagaattgtttctcacttctcgaattagaaac 572 ||||||||||| |||||||| || |||||| ||| ||||||||||||||| || ||| Sbjct: 433 cgattaagagttgctcttgggcctggaggagatttggctctcacttctcgaataaggaac 492 Query: 573 accaacactgatggaaaacccttctcatttacatttgcatatcatacatacttctccgtg 632 |||||||||||||||| ||| |||||||||||||||||||| || || |||||||| || Sbjct: 493 accaacactgatggaagaccattctcatttacatttgcataccacacgtacttctctgta 552 Query: 633 tctgacataagcgaagtacgtattgaagg 661 ||||||||||| ||||| || |||||||| Sbjct: 553 tctgacataagtgaagtgcgcattgaagg 581
>dbj|AK070482.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050C09, full insert sequence Length = 1518 Score = 216 bits (109), Expect = 7e-53 Identities = 184/209 (88%) Strand = Plus / Plus Query: 453 gatctcattctgaagccttctgaagaagatctcaagatctggcctcacagatttgaattc 512 ||||| ||||||||| |||||||||||||||||||||| |||||||| || ||||||||| Sbjct: 457 gatcttattctgaagacttctgaagaagatctcaagatatggcctcatagctttgaattc 516 Query: 513 cgattaagagtcgctcttggacccaaaggagaattgtttctcacttctcgaattagaaac 572 ||||||||||| |||||||| || |||||| ||| ||||||||||||||| || ||| Sbjct: 517 cgattaagagttgctcttgggcctggaggagatttggctctcacttctcgaataaggaac 576 Query: 573 accaacactgatggaaaacccttctcatttacatttgcatatcatacatacttctccgtg 632 |||||||||||||||| ||| |||||||||||||||||||| || || |||||||| || Sbjct: 577 accaacactgatggaagaccattctcatttacatttgcataccacacgtacttctctgta 636 Query: 633 tctgacataagcgaagtacgtattgaagg 661 ||||||||||| ||||| || |||||||| Sbjct: 637 tctgacataagtgaagtgcgcattgaagg 665 Score = 178 bits (90), Expect = 2e-41 Identities = 174/202 (86%) Strand = Plus / Plus Query: 217 tatatggagggcaagttacctcttggaagaatgaacagggggatgagttactttttgtaa 276 |||||||||| ||||| ||||||||||||||||| | |||||||| ||||||||||||| Sbjct: 221 tatatggaggtcaagtgacctcttggaagaatgaccgtggggatgaattactttttgtaa 280 Query: 277 gcagcaaggcagtttttaagtctccaggagcaattcgtggtggcatacccatttgctttc 336 |||||||||| ||| ||| ||||| |||||| ||||||||||||||||||||||| | Sbjct: 281 gcagcaaggccactttcaagcctccaaaagcaatccgtggtggcatacccatttgcttcc 340 Query: 337 cccagtttggaacacatggaaatcttgaaaaacatggatttgcgaggaaccggctatggc 396 |||| ||||| || ||||||| |||||| |||||||||||||| ||||| ||| | ||| Sbjct: 341 cccaatttggcactcatggaattcttgagaaacatggatttgcaaggaatcggttctggg 400 Query: 397 tcgttgatgataatcctccacc 418 ||||||||||||||||||| Sbjct: 401 ctattgatgataatcctccacc 422
>dbj|D37938.1|PENPSBCA Pennisetum ciliare apomixis-associated mRNA, clone:psb C Length = 1398 Score = 200 bits (101), Expect = 4e-48 Identities = 362/449 (80%) Strand = Plus / Plus Query: 219 tatggagggcaagttacctcttggaagaatgaacagggggatgagttactttttgtaagc 278 ||||| || ||||| || || ||||||||||| | ||||| || || |||||| | ||| Sbjct: 252 tatgggggtcaagtaacatcatggaagaatgacaatggggaagaattgctttttctcagc 311 Query: 279 agcaaggcagtttttaagtctccaggagcaattcgtggtggcatacccatttgctttccc 338 |||||||| |||| || ||||| ||| ||||||||||| |||||||| ||| ||||| Sbjct: 312 agcaaggctattttcaaacctccaaaagccattcgtggtggtatacccatctgccttccc 371 Query: 339 cagtttggaacacatggaaatcttgaaaaacatggatttgcgaggaaccggctatggctc 398 || ||||| || |||||||||||||| ||||||| ||||| ||||||||| | ||| | Sbjct: 372 caatttgggactcatggaaatcttgagcaacatgggtttgcaaggaaccggttttggagc 431 Query: 399 gttgatgataatcctccaccactcccagtaaacagcggtattaaaacttatgcagatctc 458 |||| | |||| || || | ||||||||| | ||||||| ||| || ||||| Sbjct: 432 attgacaacgatccacctcctttgccagtaaaccctgctattaaagcttttgttgatctg 491 Query: 459 attctgaagccttctgaagaagatctcaagatctggcctcacagatttgaattccgatta 518 ||||||| |||| ||||||||||| | ||||||||||||||||| ||||| || || || Sbjct: 492 attctgaggcctgctgaagaagatttaaagatctggcctcacagttttgagtttcgcttg 551 Query: 519 agagtcgctcttggacccaaaggagaattgtttctcacttctcgaattagaaacaccaac 578 ||||| ||||||||||| ||||| ||| ||| || ||||||||||| || |||||| Sbjct: 552 agagttgctcttggaccttctggagatttgagtcttacatctcgaattaggaataccaac 611 Query: 579 actgatggaaaacccttctcatttacatttgcatatcatacatacttctccgtgtctgac 638 |||||||||| ||||||||| | ||| ||||||||||| |||||||||| || |||||| Sbjct: 612 actgatggaagacccttctcttatacgtttgcatatcacacatacttctttgtctctgac 671 Query: 639 ataagcgaagtacgtattgaagggctgga 667 ||||| || || ||| ||||||||||||| Sbjct: 672 ataagtgaggtgcgtgttgaagggctgga 700
>gb|U13148.1|PCU13148 Pennisetum ciliare possible apospory-associated mRNA clone pSUB C, complete cds Length = 1398 Score = 200 bits (101), Expect = 4e-48 Identities = 362/449 (80%) Strand = Plus / Plus Query: 219 tatggagggcaagttacctcttggaagaatgaacagggggatgagttactttttgtaagc 278 ||||| || ||||| || || ||||||||||| | ||||| || || |||||| | ||| Sbjct: 252 tatgggggtcaagtaacatcatggaagaatgacaatggggaagaattgctttttctcagc 311 Query: 279 agcaaggcagtttttaagtctccaggagcaattcgtggtggcatacccatttgctttccc 338 |||||||| |||| || ||||| ||| ||||||||||| |||||||| ||| ||||| Sbjct: 312 agcaaggctattttcaaacctccaaaagccattcgtggtggtatacccatctgccttccc 371 Query: 339 cagtttggaacacatggaaatcttgaaaaacatggatttgcgaggaaccggctatggctc 398 || ||||| || |||||||||||||| ||||||| ||||| ||||||||| | ||| | Sbjct: 372 caatttgggactcatggaaatcttgagcaacatgggtttgcaaggaaccggttttggagc 431 Query: 399 gttgatgataatcctccaccactcccagtaaacagcggtattaaaacttatgcagatctc 458 |||| | |||| || || | ||||||||| | ||||||| ||| || ||||| Sbjct: 432 attgacaacgatccacctcctttgccagtaaaccctgctattaaagcttttgttgatctg 491 Query: 459 attctgaagccttctgaagaagatctcaagatctggcctcacagatttgaattccgatta 518 ||||||| |||| ||||||||||| | ||||||||||||||||| ||||| || || || Sbjct: 492 attctgaggcctgctgaagaagatttaaagatctggcctcacagttttgagtttcgcttg 551 Query: 519 agagtcgctcttggacccaaaggagaattgtttctcacttctcgaattagaaacaccaac 578 ||||| ||||||||||| ||||| ||| ||| || ||||||||||| || |||||| Sbjct: 552 agagttgctcttggaccttctggagatttgagtcttacatctcgaattaggaataccaac 611 Query: 579 actgatggaaaacccttctcatttacatttgcatatcatacatacttctccgtgtctgac 638 |||||||||| ||||||||| | ||| ||||||||||| |||||||||| || |||||| Sbjct: 612 actgatggaagacccttctcttatacgtttgcatatcacacatacttctttgtctctgac 671 Query: 639 ataagcgaagtacgtattgaagggctgga 667 ||||| || || ||| ||||||||||||| Sbjct: 672 ataagtgaggtgcgtgttgaagggctgga 700
>emb|Z36544.1|PCAPOSPA1 P.ciliare (Higgins) apospory associated mRNA, 1398bp Length = 1398 Score = 200 bits (101), Expect = 4e-48 Identities = 362/449 (80%) Strand = Plus / Plus Query: 219 tatggagggcaagttacctcttggaagaatgaacagggggatgagttactttttgtaagc 278 ||||| || ||||| || || ||||||||||| | ||||| || || |||||| | ||| Sbjct: 252 tatgggggtcaagtaacatcatggaagaatgacaatggggaagaattgctttttctcagc 311 Query: 279 agcaaggcagtttttaagtctccaggagcaattcgtggtggcatacccatttgctttccc 338 |||||||| |||| || ||||| ||| ||||||||||| |||||||| ||| ||||| Sbjct: 312 agcaaggctattttcaaacctccaaaagccattcgtggtggtatacccatctgccttccc 371 Query: 339 cagtttggaacacatggaaatcttgaaaaacatggatttgcgaggaaccggctatggctc 398 || ||||| || |||||||||||||| ||||||| ||||| ||||||||| | ||| | Sbjct: 372 caatttgggactcatggaaatcttgagcaacatgggtttgcaaggaaccggttttggagc 431 Query: 399 gttgatgataatcctccaccactcccagtaaacagcggtattaaaacttatgcagatctc 458 |||| | |||| || || | ||||||||| | ||||||| ||| || ||||| Sbjct: 432 attgacaacgatccacctcctttgccagtaaaccctgctattaaagcttttgttgatctg 491 Query: 459 attctgaagccttctgaagaagatctcaagatctggcctcacagatttgaattccgatta 518 ||||||| |||| ||||||||||| | ||||||||||||||||| ||||| || || || Sbjct: 492 attctgaggcctgctgaagaagatttaaagatctggcctcacagttttgagtttcgcttg 551 Query: 519 agagtcgctcttggacccaaaggagaattgtttctcacttctcgaattagaaacaccaac 578 ||||| ||||||||||| ||||| ||| ||| || ||||||||||| || |||||| Sbjct: 552 agagttgctcttggaccttctggagatttgagtcttacatctcgaattaggaataccaac 611 Query: 579 actgatggaaaacccttctcatttacatttgcatatcatacatacttctccgtgtctgac 638 |||||||||| ||||||||| | ||| ||||||||||| |||||||||| || |||||| Sbjct: 612 actgatggaagacccttctcttatacgtttgcatatcacacatacttctttgtctctgac 671 Query: 639 ataagcgaagtacgtattgaagggctgga 667 ||||| || || ||| ||||||||||||| Sbjct: 672 ataagtgaggtgcgtgttgaagggctgga 700
>emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041A02, complete sequence Length = 166804 Score = 143 bits (72), Expect = 9e-31 Identities = 123/140 (87%) Strand = Plus / Plus Query: 504 tttgaattccgattaagagtcgctcttggacccaaaggagaattgtttctcacttctcga 563 |||||||||||||||||||| |||||||| || |||||| ||| ||||||||||||| Sbjct: 103228 tttgaattccgattaagagttgctcttgggcctggaggagatttggctctcacttctcga 103287 Query: 564 attagaaacaccaacactgatggaaaacccttctcatttacatttgcatatcatacatac 623 || || ||||||||||||||||||| ||| |||||||||||||||||||| || || ||| Sbjct: 103288 ataaggaacaccaacactgatggaagaccattctcatttacatttgcataccacacgtac 103347 Query: 624 ttctccgtgtctgacataag 643 ||||| || ||||||||||| Sbjct: 103348 ttctctgtatctgacataag 103367 Score = 91.7 bits (46), Expect = 3e-15 Identities = 70/78 (89%) Strand = Plus / Plus Query: 208 aggtccgtctatatggagggcaagttacctcttggaagaatgaacagggggatgagttac 267 |||||| | |||||||||| ||||| ||||||||||||||||| | |||||||| |||| Sbjct: 102383 aggtccatttatatggaggtcaagtgacctcttggaagaatgaccgtggggatgaattac 102442 Query: 268 tttttgtaagcagcaagg 285 |||||||||||||||||| Sbjct: 102443 tttttgtaagcagcaagg 102460 Score = 69.9 bits (35), Expect = 1e-08 Identities = 44/47 (93%) Strand = Plus / Plus Query: 453 gatctcattctgaagccttctgaagaagatctcaagatctggcctca 499 ||||| ||||||||| |||||||||||||||||||||| |||||||| Sbjct: 103075 gatcttattctgaagacttctgaagaagatctcaagatatggcctca 103121 Score = 69.9 bits (35), Expect = 1e-08 Identities = 44/47 (93%) Strand = Plus / Plus Query: 141 gagcgcaccaagggcccctccggcctcgacaagatcgtgctccgcga 187 |||||| ||||||||||||| |||||||||||| ||||||||||||| Sbjct: 100761 gagcgcgccaagggcccctcaggcctcgacaaggtcgtgctccgcga 100807 Score = 63.9 bits (32), Expect = 6e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 339 cagtttggaacacatggaaatcttgaaaaacatggatttgcgaggaaccggctatggctc 398 |||||||| || ||||||| |||||| |||||||||||||| ||||| ||| | ||| Sbjct: 102961 cagtttggcactcatggaattcttgagaaacatggatttgcaaggaatcggttctgggct 103020 Query: 399 gttgatgataatcctccacc 418 ||||||||||||||||||| Sbjct: 103021 attgatgataatcctccacc 103040 Score = 56.0 bits (28), Expect = 2e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 305 agcaattcgtggtggcatacccatttgctttcccca 340 |||||| ||||||||||||||||||||||| ||||| Sbjct: 102836 agcaatccgtggtggcatacccatttgcttccccca 102871
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 143 bits (72), Expect = 9e-31 Identities = 123/140 (87%) Strand = Plus / Plus Query: 504 tttgaattccgattaagagtcgctcttggacccaaaggagaattgtttctcacttctcga 563 |||||||||||||||||||| |||||||| || |||||| ||| ||||||||||||| Sbjct: 30469851 tttgaattccgattaagagttgctcttgggcctggaggagatttggctctcacttctcga 30469910 Query: 564 attagaaacaccaacactgatggaaaacccttctcatttacatttgcatatcatacatac 623 || || ||||||||||||||||||| ||| |||||||||||||||||||| || || ||| Sbjct: 30469911 ataaggaacaccaacactgatggaagaccattctcatttacatttgcataccacacgtac 30469970 Query: 624 ttctccgtgtctgacataag 643 ||||| || ||||||||||| Sbjct: 30469971 ttctctgtatctgacataag 30469990 Score = 91.7 bits (46), Expect = 3e-15 Identities = 70/78 (89%) Strand = Plus / Plus Query: 208 aggtccgtctatatggagggcaagttacctcttggaagaatgaacagggggatgagttac 267 |||||| | |||||||||| ||||| ||||||||||||||||| | |||||||| |||| Sbjct: 30469006 aggtccatttatatggaggtcaagtgacctcttggaagaatgaccgtggggatgaattac 30469065 Query: 268 tttttgtaagcagcaagg 285 |||||||||||||||||| Sbjct: 30469066 tttttgtaagcagcaagg 30469083 Score = 69.9 bits (35), Expect = 1e-08 Identities = 44/47 (93%) Strand = Plus / Plus Query: 453 gatctcattctgaagccttctgaagaagatctcaagatctggcctca 499 ||||| ||||||||| |||||||||||||||||||||| |||||||| Sbjct: 30469698 gatcttattctgaagacttctgaagaagatctcaagatatggcctca 30469744 Score = 69.9 bits (35), Expect = 1e-08 Identities = 44/47 (93%) Strand = Plus / Plus Query: 141 gagcgcaccaagggcccctccggcctcgacaagatcgtgctccgcga 187 |||||| ||||||||||||| |||||||||||| ||||||||||||| Sbjct: 30467384 gagcgcgccaagggcccctcaggcctcgacaaggtcgtgctccgcga 30467430 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 582 gatggaaaacccttctcatttacatttgcatatcatacatactt 625 |||||||| || ||||||||||||||||||||||| |||||||| Sbjct: 33595033 gatggaaagccattctcatttacatttgcatatcacacatactt 33595076 Score = 63.9 bits (32), Expect = 6e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 339 cagtttggaacacatggaaatcttgaaaaacatggatttgcgaggaaccggctatggctc 398 |||||||| || ||||||| |||||| |||||||||||||| ||||| ||| | ||| Sbjct: 30469584 cagtttggcactcatggaattcttgagaaacatggatttgcaaggaatcggttctgggct 30469643 Query: 399 gttgatgataatcctccacc 418 ||||||||||||||||||| Sbjct: 30469644 attgatgataatcctccacc 30469663 Score = 56.0 bits (28), Expect = 2e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 305 agcaattcgtggtggcatacccatttgctttcccca 340 |||||| ||||||||||||||||||||||| ||||| Sbjct: 30469459 agcaatccgtggtggcatacccatttgcttccccca 30469494 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 472 ctgaagaagatctcaagatctggcc 496 ||||||||||||| ||||||||||| Sbjct: 33594765 ctgaagaagatctaaagatctggcc 33594789
>gb|AY105198.1| Zea mays PCO070011 mRNA sequence Length = 1505 Score = 141 bits (71), Expect = 3e-30 Identities = 146/171 (85%) Strand = Plus / Plus Query: 219 tatggagggcaagttacctcttggaagaatgaacagggggatgagttactttttgtaagc 278 |||||||| ||||| || || ||||||||||| | ||||| ||||| |||||| | ||| Sbjct: 283 tatggaggtcaagtaacatcatggaagaatgacaatggggaagagttgctttttctcagc 342 Query: 279 agcaaggcagtttttaagtctccaggagcaattcgtggtggcatacccatttgctttccc 338 |||||||| |||| || ||||| ||| ||||||||||| ||||| |||||||||||| Sbjct: 343 agcaaggctattttcaaacctccaaaagctattcgtggtggtataccaatttgctttccc 402 Query: 339 cagtttggaacacatggaaatcttgaaaaacatggatttgcgaggaaccgg 389 || |||||||||||||||||||||||| |||||||||| || ||||||||| Sbjct: 403 caatttggaacacatggaaatcttgaacaacatggattcgctaggaaccgg 453 Score = 133 bits (67), Expect = 8e-28 Identities = 178/215 (82%) Strand = Plus / Plus Query: 453 gatctcattctgaagccttctgaagaagatctcaagatctggcctcacagatttgaattc 512 ||||| |||||||||||||||||||| ||| | ||||||||||| ||||| |||||||| Sbjct: 517 gatctgattctgaagccttctgaagaggatttaaagatctggccccacagttttgaattt 576 Query: 513 cgattaagagtcgctcttggacccaaaggagaattgtttctcacttctcgaattagaaac 572 || || ||||| ||||||||||| ||||| || |||||| || ||||| || ||| Sbjct: 577 cgcttgagagttgctcttggaccttctggagatctgagtctcacatcacgaatcaggaac 636 Query: 573 accaacactgatggaaaacccttctcatttacatttgcatatcatacatacttctccgtg 632 | |||| | ||||||| ||| ||||| | ||||||||||||||| ||||||||||| || Sbjct: 637 aacaacccagatggaagacctttctcttatacatttgcatatcacacatacttctctgtc 696 Query: 633 tctgacataagcgaagtacgtattgaagggctgga 667 ||||||||||| || || ||| | ||||||||||| Sbjct: 697 tctgacataagtgaggtgcgtgtcgaagggctgga 731
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 121 bits (61), Expect = 3e-24 Identities = 142/169 (84%) Strand = Plus / Minus Query: 339 cagtttggaacacatggaaatcttgaaaaacatggatttgcgaggaaccggctatggctc 398 ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||| Sbjct: 8585919 cagtttggaacacatggaaatcttgaacaacatggatttgcaaggaaccgattatggact 8585860 Query: 399 gttgatgataatcctccaccactcccagtaaacagcggtattaaaacttatgcagatctc 458 ||||||||||||| ||||| | ||||||||| | ||||||| ||| || ||||| Sbjct: 8585859 attgatgataatccaccacctttaccagtaaaccctgctattaaatcttttgttgatctg 8585800 Query: 459 attctgaagccttctgaagaagatctcaagatctggcctcacagatttg 507 ||||||| ||||||||| || ||| | ||||||||||||||||| |||| Sbjct: 8585799 attctgaggccttctgacgaggatttaaagatctggcctcacaggtttg 8585751 Score = 99.6 bits (50), Expect = 1e-17 Identities = 119/142 (83%) Strand = Plus / Minus Query: 499 acagatttgaattccgattaagagtcgctcttggacccaaaggagaattgtttctcactt 558 |||| ||||| ||||| || ||||| |||||||| || || || || ||| |||||||| Sbjct: 8585649 acagttttgagttccgcttgagagttgctcttggtcctaatggggatttgagtctcactt 8585590 Query: 559 ctcgaattagaaacaccaacactgatggaaaacccttctcatttacatttgcatatcata 618 |||||||||| || |||||||||||||||| | | ||||| | |||||||||||||| | Sbjct: 8585589 ctcgaattaggaataccaacactgatggaagatctttctcttacacatttgcatatcaca 8585530 Query: 619 catacttctccgtgtctgacat 640 |||||||||| || |||||||| Sbjct: 8585529 catacttctctgtctctgacat 8585508 Score = 48.1 bits (24), Expect = 0.037 Identities = 30/32 (93%) Strand = Plus / Minus Query: 309 attcgtggtggcatacccatttgctttcccca 340 ||||||||||| |||||||||||||| ||||| Sbjct: 8586029 attcgtggtgggatacccatttgcttccccca 8585998 Score = 46.1 bits (23), Expect = 0.15 Identities = 56/67 (83%) Strand = Plus / Minus Query: 219 tatggagggcaagttacctcttggaagaatgaacagggggatgagttactttttgtaagc 278 ||||||| ||||| ||||| ||||||||||| || | ||| ||||| |||||||| ||| Sbjct: 8586466 tatggagctcaagtaacctcatggaagaatgaccatgcggaggagttgctttttgtcagc 8586407 Query: 279 agcaagg 285 || |||| Sbjct: 8586406 agtaagg 8586400
>dbj|AP005249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0087F21 Length = 187401 Score = 121 bits (61), Expect = 3e-24 Identities = 142/169 (84%) Strand = Plus / Minus Query: 339 cagtttggaacacatggaaatcttgaaaaacatggatttgcgaggaaccggctatggctc 398 ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||| Sbjct: 97830 cagtttggaacacatggaaatcttgaacaacatggatttgcaaggaaccgattatggact 97771 Query: 399 gttgatgataatcctccaccactcccagtaaacagcggtattaaaacttatgcagatctc 458 ||||||||||||| ||||| | ||||||||| | ||||||| ||| || ||||| Sbjct: 97770 attgatgataatccaccacctttaccagtaaaccctgctattaaatcttttgttgatctg 97711 Query: 459 attctgaagccttctgaagaagatctcaagatctggcctcacagatttg 507 ||||||| ||||||||| || ||| | ||||||||||||||||| |||| Sbjct: 97710 attctgaggccttctgacgaggatttaaagatctggcctcacaggtttg 97662 Score = 99.6 bits (50), Expect = 1e-17 Identities = 119/142 (83%) Strand = Plus / Minus Query: 499 acagatttgaattccgattaagagtcgctcttggacccaaaggagaattgtttctcactt 558 |||| ||||| ||||| || ||||| |||||||| || || || || ||| |||||||| Sbjct: 97560 acagttttgagttccgcttgagagttgctcttggtcctaatggggatttgagtctcactt 97501 Query: 559 ctcgaattagaaacaccaacactgatggaaaacccttctcatttacatttgcatatcata 618 |||||||||| || |||||||||||||||| | | ||||| | |||||||||||||| | Sbjct: 97500 ctcgaattaggaataccaacactgatggaagatctttctcttacacatttgcatatcaca 97441 Query: 619 catacttctccgtgtctgacat 640 |||||||||| || |||||||| Sbjct: 97440 catacttctctgtctctgacat 97419 Score = 48.1 bits (24), Expect = 0.037 Identities = 30/32 (93%) Strand = Plus / Minus Query: 309 attcgtggtggcatacccatttgctttcccca 340 ||||||||||| |||||||||||||| ||||| Sbjct: 97940 attcgtggtgggatacccatttgcttccccca 97909 Score = 46.1 bits (23), Expect = 0.15 Identities = 56/67 (83%) Strand = Plus / Minus Query: 219 tatggagggcaagttacctcttggaagaatgaacagggggatgagttactttttgtaagc 278 ||||||| ||||| ||||| ||||||||||| || | ||| ||||| |||||||| ||| Sbjct: 98377 tatggagctcaagtaacctcatggaagaatgaccatgcggaggagttgctttttgtcagc 98318 Query: 279 agcaagg 285 || |||| Sbjct: 98317 agtaagg 98311
>dbj|AP004657.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0031C02 Length = 138843 Score = 121 bits (61), Expect = 3e-24 Identities = 142/169 (84%) Strand = Plus / Minus Query: 339 cagtttggaacacatggaaatcttgaaaaacatggatttgcgaggaaccggctatggctc 398 ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||| Sbjct: 115462 cagtttggaacacatggaaatcttgaacaacatggatttgcaaggaaccgattatggact 115403 Query: 399 gttgatgataatcctccaccactcccagtaaacagcggtattaaaacttatgcagatctc 458 ||||||||||||| ||||| | ||||||||| | ||||||| ||| || ||||| Sbjct: 115402 attgatgataatccaccacctttaccagtaaaccctgctattaaatcttttgttgatctg 115343 Query: 459 attctgaagccttctgaagaagatctcaagatctggcctcacagatttg 507 ||||||| ||||||||| || ||| | ||||||||||||||||| |||| Sbjct: 115342 attctgaggccttctgacgaggatttaaagatctggcctcacaggtttg 115294 Score = 99.6 bits (50), Expect = 1e-17 Identities = 119/142 (83%) Strand = Plus / Minus Query: 499 acagatttgaattccgattaagagtcgctcttggacccaaaggagaattgtttctcactt 558 |||| ||||| ||||| || ||||| |||||||| || || || || ||| |||||||| Sbjct: 115192 acagttttgagttccgcttgagagttgctcttggtcctaatggggatttgagtctcactt 115133 Query: 559 ctcgaattagaaacaccaacactgatggaaaacccttctcatttacatttgcatatcata 618 |||||||||| || |||||||||||||||| | | ||||| | |||||||||||||| | Sbjct: 115132 ctcgaattaggaataccaacactgatggaagatctttctcttacacatttgcatatcaca 115073 Query: 619 catacttctccgtgtctgacat 640 |||||||||| || |||||||| Sbjct: 115072 catacttctctgtctctgacat 115051 Score = 48.1 bits (24), Expect = 0.037 Identities = 30/32 (93%) Strand = Plus / Minus Query: 309 attcgtggtggcatacccatttgctttcccca 340 ||||||||||| |||||||||||||| ||||| Sbjct: 115572 attcgtggtgggatacccatttgcttccccca 115541 Score = 46.1 bits (23), Expect = 0.15 Identities = 56/67 (83%) Strand = Plus / Minus Query: 219 tatggagggcaagttacctcttggaagaatgaacagggggatgagttactttttgtaagc 278 ||||||| ||||| ||||| ||||||||||| || | ||| ||||| |||||||| ||| Sbjct: 116009 tatggagctcaagtaacctcatggaagaatgaccatgcggaggagttgctttttgtcagc 115950 Query: 279 agcaagg 285 || |||| Sbjct: 115949 agtaagg 115943
>gb|BT013379.1| Lycopersicon esculentum clone 135411R, mRNA sequence Length = 1477 Score = 87.7 bits (44), Expect = 4e-14 Identities = 80/92 (86%) Strand = Plus / Plus Query: 558 tctcgaattagaaacaccaacactgatggaaaacccttctcatttacatttgcatatcat 617 ||||| ||||||||||||| |||||||||||| || ||| ||||||||||||||||||| Sbjct: 499 tctcgtattagaaacaccagcactgatggaaagcctttcgcatttacatttgcatatcac 558 Query: 618 acatacttctccgtgtctgacataagcgaagt 649 || |||||||| || || ||||| || ||||| Sbjct: 559 acctacttctctgtttcagacatcagtgaagt 590 Score = 48.1 bits (24), Expect = 0.037 Identities = 66/80 (82%) Strand = Plus / Plus Query: 237 tcttggaagaatgaacagggggatgagttactttttgtaagcagcaaggcagtttttaag 296 |||||||||||||| ||| | || || || || ||||| || |||||||| |||||||| Sbjct: 178 tcttggaagaatgatcagagagaggaattgctctttgttagtagcaaggccatttttaag 237 Query: 297 tctccaggagcaattcgtgg 316 ||||| |||||||||||| Sbjct: 238 cctccaaaagcaattcgtgg 257
>ref|XM_474188.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1035 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 582 gatggaaaacccttctcatttacatttgcatatcatacatactt 625 |||||||| || ||||||||||||||||||||||| |||||||| Sbjct: 532 gatggaaagccattctcatttacatttgcatatcacacatactt 575
>emb|AL662953.3|OSJN00153 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011F23, complete sequence Length = 149353 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 582 gatggaaaacccttctcatttacatttgcatatcatacatactt 625 |||||||| || ||||||||||||||||||||||| |||||||| Sbjct: 26093 gatggaaagccattctcatttacatttgcatatcacacatactt 26136 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 472 ctgaagaagatctcaagatctggcc 496 ||||||||||||| ||||||||||| Sbjct: 25825 ctgaagaagatctaaagatctggcc 25849
>gb|AF480497.1| Oryza sativa clone BAC 24K23, complete sequence Length = 181577 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 582 gatggaaaacccttctcatttacatttgcatatcatacatactt 625 |||||||| || ||||||||||||||||||||||| |||||||| Sbjct: 26287 gatggaaagccattctcatttacatttgcatatcacacatactt 26330 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 472 ctgaagaagatctcaagatctggcc 496 ||||||||||||| ||||||||||| Sbjct: 26019 ctgaagaagatctaaagatctggcc 26043
>dbj|AK071255.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086C22, full insert sequence Length = 1660 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 582 gatggaaaacccttctcatttacatttgcatatcatacatactt 625 |||||||| || ||||||||||||||||||||||| |||||||| Sbjct: 754 gatggaaagccattctcatttacatttgcatatcacacatactt 797
>dbj|AK068928.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170O13, full insert sequence Length = 3699 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 582 gatggaaaacccttctcatttacatttgcatatcatacatactt 625 |||||||| || ||||||||||||||||||||||| |||||||| Sbjct: 1072 gatggaaagccattctcatttacatttgcatatcacacatactt 1115 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 472 ctgaagaagatctcaagatctggcc 496 ||||||||||||| ||||||||||| Sbjct: 804 ctgaagaagatctaaagatctggcc 828
>ref|NM_116026.2| Arabidopsis thaliana aldose 1-epimerase AT3G61610 mRNA, complete cds Length = 1583 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Plus Query: 604 catttgcatatcatacatacttctccgtgtctgacataagcgaagtacgtattgaagggc 663 ||||||||||||| || ||| |||| || ||||||||||| ||||| | ||||||||| Sbjct: 956 catttgcatatcacacctacctctctgtctctgacataagtgaagtgagaattgaagggt 1015 Query: 664 tggaga 669 |||||| Sbjct: 1016 tggaga 1021
>emb|BX822140.1|CNS0A606 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB15ZG01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1579 Score = 52.0 bits (26), Expect = 0.002 Identities = 56/66 (84%) Strand = Plus / Plus Query: 604 catttgcatatcatacatacttctccgtgtctgacataagcgaagtacgtattgaagggc 663 ||||||||||||| || ||| |||| || ||||||||||| ||||| | ||||||||| Sbjct: 955 catttgcatatcacacctacctctctgtctctgacataagtgaagtgagaattgaagggt 1014 Query: 664 tggaga 669 |||||| Sbjct: 1015 tggaga 1020
>emb|AL033526.24|HS110F11 Human DNA sequence from clone RP1-110F11 on chromosome 1p33-34.3, complete sequence Length = 112339 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 479 agatctcaagatctggcctcaca 501 ||||||||||||||||||||||| Sbjct: 83200 agatctcaagatctggcctcaca 83178
>ref|XM_585264.2| PREDICTED: Bos taurus similar to Copine-5 (Copine V) (LOC508482), mRNA Length = 2082 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1 gctccctccgcccccttccctc 22 |||||||||||||||||||||| Sbjct: 71 gctccctccgcccccttccctc 92
>ref|XM_545739.2| PREDICTED: Canis familiaris similar to myeloid cell nuclear differentiation antigen (LOC488622), mRNA Length = 1921 Score = 44.1 bits (22), Expect = 0.59 Identities = 25/26 (96%) Strand = Plus / Plus Query: 468 ccttctgaagaagatctcaagatctg 493 |||||||||||||| ||||||||||| Sbjct: 354 ccttctgaagaagacctcaagatctg 379
>gb|CP000235.1| Anaplasma phagocytophilum HZ, complete genome Length = 1471282 Score = 44.1 bits (22), Expect = 0.59 Identities = 25/26 (96%) Strand = Plus / Plus Query: 285 gcagtttttaagtctccaggagcaat 310 ||||||||||||||| |||||||||| Sbjct: 670341 gcagtttttaagtcttcaggagcaat 670366
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.59 Identities = 28/30 (93%) Strand = Plus / Minus Query: 359 tcttgaaaaacatggatttgcgaggaaccg 388 ||||||| ||||||||||||| |||||||| Sbjct: 4222302 tcttgaacaacatggatttgcaaggaaccg 4222273
>dbj|AP004838.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0504A05 Length = 148360 Score = 44.1 bits (22), Expect = 0.59 Identities = 28/30 (93%) Strand = Plus / Minus Query: 359 tcttgaaaaacatggatttgcgaggaaccg 388 ||||||| ||||||||||||| |||||||| Sbjct: 39116 tcttgaacaacatggatttgcaaggaaccg 39087
>ref|XM_450000.1| Oryza sativa (japonica cultivar-group), mRNA Length = 807 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 cggcgcgtcctcgccgccccc 103 ||||||||||||||||||||| Sbjct: 419 cggcgcgtcctcgccgccccc 439
>gb|AC113518.9| Mus musculus chromosome 1, clone RP23-477L7, complete sequence Length = 194281 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 594 ttctcatttacatttgcatat 614 ||||||||||||||||||||| Sbjct: 164360 ttctcatttacatttgcatat 164380
>emb|AL356428.11| Human DNA sequence from clone RP11-343F16 on chromosome 1, complete sequence Length = 174739 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 594 ttctcatttacatttgcatat 614 ||||||||||||||||||||| Sbjct: 17806 ttctcatttacatttgcatat 17786
>emb|AL159973.16| Human DNA sequence from clone RP11-197L7 on chromosome 13q13.1-13.3 Contains a novel gene similar to binder of Arl Two (Bart1), the RFXAP gene for regulatory factor X-associated protein and a CpG_island, complete sequence Length = 76174 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 ctccctccgcccccttccctc 22 ||||||||||||||||||||| Sbjct: 11833 ctccctccgcccccttccctc 11853
>emb|AL035669.43|HS885L7 Human DNA sequence from clone RP5-885L7 on chromosome 20q13.2-13.33 Contains the 3' end of the NTSR1 gene for high affinity neurotensin receptor 1, the C20orf20 gene, the OGFR gene for opioid growth factor receptor, the COL9A3 gene for collagen IX alpha 3, the C20orf143 gene, the TCFL5 gene for basic helix-loop-helix transcription factor-like 5, the ARF4P2 gene for ADP-ribosylation factor 4 pseudogene 2, the 3' end of the DATF1 gene for death associated transcription factor 1, two novel genes and seven CpG islands, complete sequence Length = 160241 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 346 gaacacatggaaatcttgaaa 366 ||||||||||||||||||||| Sbjct: 147709 gaacacatggaaatcttgaaa 147689
>emb|BX908783.8| Zebrafish DNA sequence from clone DKEY-86M2 in linkage group 25, complete sequence Length = 216800 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 342 tttggaacacatggaaatcttgaaa 366 ||||||||||||||||||| ||||| Sbjct: 16406 tttggaacacatggaaatcatgaaa 16430
>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold Length = 2136267 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 ctccaggagcaattcgtggtg 318 ||||||||||||||||||||| Sbjct: 537291 ctccaggagcaattcgtggtg 537311
>gb|AC008957.7|AC008957 Homo sapiens chromosome 5 clone CTD-2353F22, complete sequence Length = 89354 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 3 tccctccgcccccttccctcgctct 27 ||||| ||||||||||||||||||| Sbjct: 28224 tcccttcgcccccttccctcgctct 28200
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 8 ccgcccccttccctcgctctc 28 ||||||||||||||||||||| Sbjct: 10258238 ccgcccccttccctcgctctc 10258258
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 83 cggcgcgtcctcgccgccccc 103 ||||||||||||||||||||| Sbjct: 926281 cggcgcgtcctcgccgccccc 926261
>gb|AC150730.3| Atelerix albiventris clone LB4-141D24, complete sequence Length = 136615 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 ctccaggagcaattcgtggtg 318 ||||||||||||||||||||| Sbjct: 114634 ctccaggagcaattcgtggtg 114654
>dbj|AP005709.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0646B04 Length = 178896 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 83 cggcgcgtcctcgccgccccc 103 ||||||||||||||||||||| Sbjct: 90408 cggcgcgtcctcgccgccccc 90388
>gb|AC010386.5|AC010386 Homo sapiens chromosome 5 clone CTD-2074B5, complete sequence Length = 101324 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 3 tccctccgcccccttccctcgctct 27 ||||| ||||||||||||||||||| Sbjct: 21700 tcccttcgcccccttccctcgctct 21724
>gb|AC113498.9| Mus musculus chromosome 1, clone RP23-366N18, complete sequence Length = 206252 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 594 ttctcatttacatttgcatat 614 ||||||||||||||||||||| Sbjct: 13137 ttctcatttacatttgcatat 13157
>gb|AC107856.7| Mus musculus chromosome 14, clone RP23-10E23, complete sequence Length = 203953 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 283 aggcagtttttaagtctccag 303 ||||||||||||||||||||| Sbjct: 106768 aggcagtttttaagtctccag 106748
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 8 ccgcccccttccctcgctctc 28 ||||||||||||||||||||| Sbjct: 10258120 ccgcccccttccctcgctctc 10258140
>emb|AL935069.5|CNS08CCL Oryza sativa chromosome 12, . BAC OSJNBb0115B15 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135439 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 8 ccgcccccttccctcgctctc 28 ||||||||||||||||||||| Sbjct: 21157 ccgcccccttccctcgctctc 21177
>emb|CT030682.10| Mouse DNA sequence from clone RP23-263O11 on chromosome 14, complete sequence Length = 144072 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 283 aggcagtttttaagtctccag 303 ||||||||||||||||||||| Sbjct: 118483 aggcagtttttaagtctccag 118463
>emb|AL626806.14| Mouse DNA sequence from clone RP23-146I18 on chromosome 4, complete sequence Length = 165969 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 4 ccctccgcccccttccctcgctctc 28 |||||||||||| |||||||||||| Sbjct: 125856 ccctccgcccccctccctcgctctc 125880
>ref|XM_955608.1| Neurospora crassa OR74A hypothetical protein (NCU06656.1) partial mRNA Length = 2772 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 gcccaagtcgcccaagctgc 126 |||||||||||||||||||| Sbjct: 2137 gcccaagtcgcccaagctgc 2156
>ref|XM_326941.1| Neurospora crassa OR74A hypothetical protein (NCU06656.1) partial mRNA Length = 2772 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 gcccaagtcgcccaagctgc 126 |||||||||||||||||||| Sbjct: 2137 gcccaagtcgcccaagctgc 2156
>ref|XM_544656.2| PREDICTED: Canis familiaris similar to Eukaryotic translation initiation factor 3 subunit 1 (eIF-3 alpha) (LOC487532), mRNA Length = 3142 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 536 caaaggagaattgtttctca 555 |||||||||||||||||||| Sbjct: 1668 caaaggagaattgtttctca 1649
>gb|AC117596.6| Mus musculus chromosome 6, clone RP23-392K24, complete sequence Length = 233811 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 ctccctccgcccccttccct 21 |||||||||||||||||||| Sbjct: 82626 ctccctccgcccccttccct 82607
>gb|AC023669.8| Homo sapiens BAC clone RP11-432O19 from 7, complete sequence Length = 207806 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 acacatggaaatcttgaaaa 367 |||||||||||||||||||| Sbjct: 91081 acacatggaaatcttgaaaa 91062
>gb|AC119415.13| Medicago truncatula clone mth2-27n2, complete sequence Length = 139330 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 ccagtttggaacacatggaa 357 |||||||||||||||||||| Sbjct: 72362 ccagtttggaacacatggaa 72381
>emb|AL450334.15| Human DNA sequence from clone RP11-556L1 on chromosome 10 Contains gene DKFZP566K0524, the gene for a novel protein similar to tyrosine phosphatase (MGC35285), the 3' end of a KIAA0187 pseudogene, the 3' end of a novel gene, the gene for a novel protein similar to ARF GTPase-activating protein (MRIP2) and a CpG island, complete sequence Length = 171930 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 tttgctttccccagtttgga 347 |||||||||||||||||||| Sbjct: 12928 tttgctttccccagtttgga 12909
>emb|AL358791.24| Human DNA sequence from clone RP11-42B19 on chromosome 10 Contains the 3' end of a novel gene, complete sequence Length = 197389 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 tttgctttccccagtttgga 347 |||||||||||||||||||| Sbjct: 188763 tttgctttccccagtttgga 188744
>emb|AL355579.12| Human DNA sequence from clone RP1-146C10 on chromosome 20 Contains STSs and GSSs, complete sequence Length = 55435 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 gttacctcttggaagaatga 250 |||||||||||||||||||| Sbjct: 30414 gttacctcttggaagaatga 30433
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 ctcgagcgcaccaagggccc 157 |||||||||||||||||||| Sbjct: 222399 ctcgagcgcaccaagggccc 222418
>emb|AL670542.1|NC18A7 Neurospora crassa DNA linkage group V cosmid contig 18A7 Length = 77690 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 gcccaagtcgcccaagctgc 126 |||||||||||||||||||| Sbjct: 72356 gcccaagtcgcccaagctgc 72337
>emb|AL596127.12| Mouse DNA sequence from clone RP23-297J14 on chromosome 11 Contains the 3' end of the Facl6 gene for fatty acid Coenzyme A ligase long chain 6, four novel genes, a ribosomal protein L35 (Rpl35) pseudogene, the 5' end of the gene for a novel protein similar to human PDZ domain containing guanine nucleotide exchange factor (GEF) 2 PDZGEF2 and three CpG islands, complete sequence Length = 198614 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 118 ccaagctgcagccgcccctcctcg 141 |||||||| ||||||||||||||| Sbjct: 16999 ccaagctggagccgcccctcctcg 16976
>emb|AL132959.1|ATF15G16 Arabidopsis thaliana DNA chromosome 3, BAC clone F15G16 Length = 104868 Score = 40.1 bits (20), Expect = 9.1 Identities = 35/40 (87%) Strand = Plus / Plus Query: 604 catttgcatatcatacatacttctccgtgtctgacataag 643 ||||||||||||| || ||| |||| || ||||||||||| Sbjct: 11675 catttgcatatcacacctacctctctgtctctgacataag 11714
>emb|AL132962.1|ATF2A19 Arabidopsis thaliana DNA chromosome 3, BAC clone F2A19 Length = 95993 Score = 40.1 bits (20), Expect = 9.1 Identities = 35/40 (87%) Strand = Plus / Plus Query: 604 catttgcatatcatacatacttctccgtgtctgacataag 643 ||||||||||||| || ||| |||| || ||||||||||| Sbjct: 94456 catttgcatatcacacctacctctctgtctctgacataag 94495
>gb|AC126789.20| Medicago truncatula clone mth2-36n23, complete sequence Length = 126875 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 ccagtttggaacacatggaa 357 |||||||||||||||||||| Sbjct: 26522 ccagtttggaacacatggaa 26541
>gb|AC073389.10| Homo sapiens chromosome 10 clone RP11-464F9, complete sequence Length = 190681 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 485 caagatctggcctcacagat 504 |||||||||||||||||||| Sbjct: 29057 caagatctggcctcacagat 29076
>gb|AC013284.9| Homo sapiens chromosome 10 clone RP11-13E1, complete sequence Length = 154259 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 tttgctttccccagtttgga 347 |||||||||||||||||||| Sbjct: 148846 tttgctttccccagtttgga 148865
>gb|AC026739.7| Homo sapiens chromosome 5 clone CTD-2580L4, complete sequence Length = 186308 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 tttgctttccccagtttgga 347 |||||||||||||||||||| Sbjct: 10256 tttgctttccccagtttgga 10237
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 ctgcagccgcccctcctcga 142 |||||||||||||||||||| Sbjct: 1372435 ctgcagccgcccctcctcga 1372416
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 102 ccgacgcccaagtcgcccaagctg 125 ||||||||||| |||||||||||| Sbjct: 2750030 ccgacgcccaactcgcccaagctg 2750007
>gb|AF329398.1| Streptomyces roseochromogenes subsp. oscitans clorobiocin biosynthetic gene cluster, complete sequence Length = 42291 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 tcctcgccgcccccgacgcc 109 |||||||||||||||||||| Sbjct: 358 tcctcgccgcccccgacgcc 377
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 cgtcctcgccgcccccgacg 107 |||||||||||||||||||| Sbjct: 2976235 cgtcctcgccgcccccgacg 2976216
>emb|AL670597.18| Mouse DNA sequence from clone RP23-235P16 on chromosome X, complete sequence Length = 186284 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 gaaatcttgaaaaacatgga 374 |||||||||||||||||||| Sbjct: 70570 gaaatcttgaaaaacatgga 70589 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 gaaatcttgaaaaacatgga 374 |||||||||||||||||||| Sbjct: 63959 gaaatcttgaaaaacatgga 63940 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 gaaatcttgaaaaacatgga 374 |||||||||||||||||||| Sbjct: 56787 gaaatcttgaaaaacatgga 56768
>emb|CT033763.2| Medicago truncatula chromosome 5 clone mth2-139a2, COMPLETE SEQUENCE Length = 132108 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 598 catttacatttgcatatcat 617 |||||||||||||||||||| Sbjct: 131496 catttacatttgcatatcat 131477
>dbj|AP000711.5| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-51K10, complete sequence Length = 111591 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 458 cattctgaagccttctgaag 477 |||||||||||||||||||| Sbjct: 108264 cattctgaagccttctgaag 108283
>emb|Y11565.1|NC11565 N.crassa acu-15 gene Length = 3889 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 gcccaagtcgcccaagctgc 126 |||||||||||||||||||| Sbjct: 3267 gcccaagtcgcccaagctgc 3286
>dbj|AP001554.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-35P15, complete sequence Length = 171747 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 458 cattctgaagccttctgaag 477 |||||||||||||||||||| Sbjct: 60970 cattctgaagccttctgaag 60989
>emb|AL671335.12| Mouse DNA sequence from clone RP23-130J1 on chromosome X, complete sequence Length = 175336 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 ttgctttccccagtttggaa 348 |||||||||||||||||||| Sbjct: 103958 ttgctttccccagtttggaa 103939 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,023,442 Number of Sequences: 3902068 Number of extensions: 6023442 Number of successful extensions: 118726 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 117999 Number of HSP's gapped (non-prelim): 715 length of query: 669 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 646 effective length of database: 17,143,297,704 effective search space: 11074570316784 effective search space used: 11074570316784 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)