ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd12p05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FOXF2_HUMAN (Q12947) Forkhead box protein F2 (Forkhead-related p... 33 0.64
2SPY_ARATH (Q96301) Probable UDP-N-acetylglucosamine--peptide N-a... 32 1.4
3OR1I1_HUMAN (O60431) Olfactory receptor 1I1 (Olfactory receptor ... 30 5.4
4AGP_SALTY (O33921) Glucose-1-phosphatase precursor (EC 3.1.3.10)... 30 9.2

>FOXF2_HUMAN (Q12947) Forkhead box protein F2 (Forkhead-related protein FKHL6)|
           (Forkhead-related transcription factor 2) (FREAC-2)
           (Forkhead-related activator 2)
          Length = 444

 Score = 33.5 bits (75), Expect = 0.64
 Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -3

Query: 296 LWRCCSPVPGALLGS--SSAPAMGGTSLGCSLTTVETSSLSPTICLSRLTKS 147
           L R CSPVPGAL  +  S  PA    +     TT  +SS S   C S  + S
Sbjct: 12  LRRACSPVPGALQAALMSPPPAAAAAAAAAPETTSSSSSSSSASCASSSSSS 63



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>SPY_ARATH (Q96301) Probable UDP-N-acetylglucosamine--peptide|
           N-acetylglucosaminyltransferase SPINDLY (EC 2.4.1.-)
          Length = 914

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 19/46 (41%), Positives = 22/46 (47%)
 Frame = -2

Query: 234 GWHFLRLQPHYCRNQQLVTDNLS*PSHKIGPAYLSPLEFFIVSMDY 97
           GW F RL P Y        DNL  P   I   Y+SP +FF  S+ Y
Sbjct: 460 GWRFTRLHPQYTS-----WDNLKDPERPITIGYISP-DFFTHSVSY 499



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>OR1I1_HUMAN (O60431) Olfactory receptor 1I1 (Olfactory receptor 19-20)|
           (OR19-20)
          Length = 355

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
 Frame = -3

Query: 377 LYNLMDVLVLSVSIGADPRAVISTNCYLWRCCSPVPGALLGSS----SAPAMGGTSLGCS 210
           L+  MD  +L+V       A++    YL   CSPV G LLG+S    +  ++  T L   
Sbjct: 106 LFGTMDSFLLAVMAIDRFVAIVHPQRYLVLMCSPVCGLLLGASWMITNLQSLIHTCLMAQ 165

Query: 209 LTTVETSSLSPTIC 168
           LT    S +S   C
Sbjct: 166 LTFCAGSEISHFFC 179



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>AGP_SALTY (O33921) Glucose-1-phosphatase precursor (EC 3.1.3.10) (G1Pase)|
          Length = 413

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -1

Query: 649 FYSRLVSKIEKM*SQLKLNISSKLKEQIYQVHHGTSCKQ 533
           F  + V  +EK  SQL L+ S KL EQI       SCK+
Sbjct: 160 FRQQAVQAMEKARSQLHLDESYKLLEQITHYQDSPSCKE 198


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,134,535
Number of Sequences: 219361
Number of extensions: 1912090
Number of successful extensions: 4540
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4538
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6969622431
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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