ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd13d19 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 Score = 515 bits (260), Expect = e-143 Identities = 267/268 (99%), Gaps = 1/268 (0%) Strand = Plus / Plus Query: 2 gacacgaggaactactcaccatgaatcc-ctaattgctgctgcttctgttattgctgctg 60 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 32483 gacacgaggaactactcaccatgaatccactaattgctgctgcttctgttattgctgctg 32542 Query: 61 gattggccgtagggcttgcttctattggacctggagttggtcaaggtactgctgcaggac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32543 gattggccgtagggcttgcttctattggacctggagttggtcaaggtactgctgcaggac 32602 Query: 121 aagctgtagaaggtattgcgagacagccagaagcagaaggtaaaatacgaggtactttat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32603 aagctgtagaaggtattgcgagacagccagaagcagaaggtaaaatacgaggtactttat 32662 Query: 181 tgcttagtctagcttttatggaagctttaacaatttatggactagttgtggcactagcgc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32663 tgcttagtctagcttttatggaagctttaacaatttatggactagttgtggcactagcgc 32722 Query: 241 ttttatttgcgaacccttttgtttaatc 268 |||||||||||||||||||||||||||| Sbjct: 32723 ttttatttgcgaacccttttgtttaatc 32750 Score = 428 bits (216), Expect = e-117 Identities = 231/236 (97%) Strand = Plus / Plus Query: 319 agtaaattggtatttgcttccgcaattccaattatatcaatactttatttaatttactcc 378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32799 agtaaattggtatttgcttccgcaattccaattatatcaatactttatttaatttactcc 32858 Query: 379 tatttattactcttggaattatctatttatcgggacagataataccgcattctaggaagg 438 |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 32859 tatttattactcctggaattatctatttatcgggacagataataccccattctaggaagg 32918 Query: 439 gctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttagt 498 |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 32919 gctgagttgagtattattaatttagaagatatgctcaccttcttatttcccgtccttagt 32978 Query: 499 ttaggaaagtggaaagttttttccttttattttaggaattttgggaacggaacatt 554 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 32979 ttaggaaagtggaaagttttttccttttattttaggaattttgggaacagaacatt 33034 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 282 ttctttcgatttcgattagatac 304 ||||||||||||||||||||||| Sbjct: 32762 ttctttcgatttcgattagatac 32784
>gb|J01458.1|WHTCPATP Wheat chloroplast ATP synthase proton-translocating subunit gene Length = 501 Score = 515 bits (260), Expect = e-143 Identities = 267/268 (99%), Gaps = 1/268 (0%) Strand = Plus / Plus Query: 2 gacacgaggaactactcaccatgaatcc-ctaattgctgctgcttctgttattgctgctg 60 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 148 gacacgaggaactactcaccatgaatccactaattgctgctgcttctgttattgctgctg 207 Query: 61 gattggccgtagggcttgcttctattggacctggagttggtcaaggtactgctgcaggac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 208 gattggccgtagggcttgcttctattggacctggagttggtcaaggtactgctgcaggac 267 Query: 121 aagctgtagaaggtattgcgagacagccagaagcagaaggtaaaatacgaggtactttat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 268 aagctgtagaaggtattgcgagacagccagaagcagaaggtaaaatacgaggtactttat 327 Query: 181 tgcttagtctagcttttatggaagctttaacaatttatggactagttgtggcactagcgc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 328 tgcttagtctagcttttatggaagctttaacaatttatggactagttgtggcactagcgc 387 Query: 241 ttttatttgcgaacccttttgtttaatc 268 |||||||||||||||||||||||||||| Sbjct: 388 ttttatttgcgaacccttttgtttaatc 415 Score = 75.8 bits (38), Expect = 1e-10 Identities = 38/38 (100%) Strand = Plus / Plus Query: 319 agtaaattggtatttgcttccgcaattccaattatatc 356 |||||||||||||||||||||||||||||||||||||| Sbjct: 464 agtaaattggtatttgcttccgcaattccaattatatc 501 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 282 ttctttcgatttcgattagatac 304 ||||||||||||||||||||||| Sbjct: 427 ttctttcgatttcgattagatac 449
>gb|AY885260.1| Thinopyrum elongatum ATP synthase CF0 subunit III (atpH) gene, complete cds; chloroplast Length = 448 Score = 511 bits (258), Expect = e-142 Identities = 268/270 (99%), Gaps = 1/270 (0%) Strand = Plus / Plus Query: 2 gacacgaggaactactcaccatgaatcc-ctaattgctgctgcttctgttattgctgctg 60 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 1 gacacgaggaactactcaccatgaatccactaattgctgctgcttctgttattgctgctg 60 Query: 61 gattggccgtagggcttgcttctattggacctggagttggtcaaggtactgctgcaggac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gattggccgtagggcttgcttctattggacctggagttggtcaaggtactgctgcaggac 120 Query: 121 aagctgtagaaggtattgcgagacagccagaagcagaaggtaaaatacgaggtactttat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aagctgtagaaggtattgcgagacagccagaagcagaaggtaaaatacgaggtactttat 180 Query: 181 tgcttagtctagcttttatggaagctttaacaatttatggactagttgtggcactagcgc 240 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 tgcttagcctagcttttatggaagctttaacaatttatggactagttgtggcactagcgc 240 Query: 241 ttttatttgcgaacccttttgtttaatcct 270 |||||||||||||||||||||||||||||| Sbjct: 241 ttttatttgcgaacccttttgtttaatcct 270 Score = 202 bits (102), Expect = 9e-49 Identities = 114/118 (96%) Strand = Plus / Plus Query: 319 agtaaattggtatttgcttccgcaattccaattatatcaatactttatttaatttactcc 378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 318 agtaaattggtatttgcttccgcaattccaattatatcaatactttatttaatttactcc 377 Query: 379 tatttattactcttggaattatctatttatcgggacagataataccgcattctaggaa 436 ||||||||| |||||||||| ||||||||||||||| ||||||||| ||||||||||| Sbjct: 378 tatttattattcttggaattctctatttatcgggacggataataccccattctaggaa 435
>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome Length = 141182 Score = 454 bits (229), Expect = e-124 Identities = 251/257 (97%), Gaps = 1/257 (0%) Strand = Plus / Plus Query: 15 actcaccatgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagg 73 ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 96499 actcaccatgaatccactaattgctgctgcttccgttattgctgctggattggccgtagg 96558 Query: 74 gcttgcttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaagg 133 ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 96559 gcttgcttctattgggcccggagttggtcaaggtactgctgcaggacaagctgtagaagg 96618 Query: 134 tattgcgagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagc 193 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 96619 tattgcgagacagccagaagcagaaggtaaaataagaggtactttattgcttagtctagc 96678 Query: 194 ttttatggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaa 253 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 96679 ttttatggaagctttaacaatttatggactggttgtggcactagcgcttttatttgcgaa 96738 Query: 254 cccttttgtttaatcct 270 ||||||||||||||||| Sbjct: 96739 cccttttgtttaatcct 96755 Score = 147 bits (74), Expect = 4e-32 Identities = 105/114 (92%), Gaps = 1/114 (0%) Strand = Plus / Plus Query: 434 gaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtcc 493 |||||||||| ||||| ||||| |||||||| |||||||||||| |||| ||||||||| Sbjct: 96933 gaagggctgatttgagcatgatcaatttagaggatatgctcgccctcttccttcccgtcc 96992 Query: 494 ttagtttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 546 ||||||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 96993 ttagtttaggacagtggaaagtatttttccttttattttaggaattttgggaac 97046 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 319 agtaaattggtatttgcttccgcaattccaattatatcaatacttta 365 |||| |||||||||||||| | ||||| || ||||||||||||||| Sbjct: 96802 agtacattggtatttgcttatgtaattctaagtatatcaatacttta 96848
>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome Length = 141182 Score = 454 bits (229), Expect = e-124 Identities = 251/257 (97%), Gaps = 1/257 (0%) Strand = Plus / Plus Query: 15 actcaccatgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagg 73 ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 34872 actcaccatgaatccactaattgctgctgcttccgttattgctgctggattggccgtagg 34931 Query: 74 gcttgcttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaagg 133 ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 34932 gcttgcttctattgggcccggagttggtcaaggtactgctgcaggacaagctgtagaagg 34991 Query: 134 tattgcgagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagc 193 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 34992 tattgcgagacagccagaagcagaaggtaaaataagaggtactttattgcttagtctagc 35051 Query: 194 ttttatggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaa 253 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 35052 ttttatggaagctttaacaatttatggactggttgtggcactagcgcttttatttgcgaa 35111 Query: 254 cccttttgtttaatcct 270 ||||||||||||||||| Sbjct: 35112 cccttttgtttaatcct 35128 Score = 147 bits (74), Expect = 4e-32 Identities = 105/114 (92%), Gaps = 1/114 (0%) Strand = Plus / Plus Query: 434 gaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtcc 493 |||||||||| ||||| ||||| |||||||| |||||||||||| |||| ||||||||| Sbjct: 35306 gaagggctgatttgagcatgatcaatttagaggatatgctcgccctcttccttcccgtcc 35365 Query: 494 ttagtttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 546 ||||||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 35366 ttagtttaggacagtggaaagtatttttccttttattttaggaattttgggaac 35419 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 319 agtaaattggtatttgcttccgcaattccaattatatcaatacttta 365 |||| |||||||||||||| | ||||| || ||||||||||||||| Sbjct: 35175 agtacattggtatttgcttatgtaattctaagtatatcaatacttta 35221
>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast, complete genome Length = 134551 Score = 446 bits (225), Expect = e-122 Identities = 250/257 (97%), Gaps = 1/257 (0%) Strand = Plus / Plus Query: 15 actcaccatgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagg 73 ||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 32034 actcatcatgaatccactaattgctgctgcttccgttattgctgctggattggccgtagg 32093 Query: 74 gcttgcttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaagg 133 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32094 tcttgcttctattgggcctggagttggtcaaggtactgctgcaggacaagctgtagaagg 32153 Query: 134 tattgcgagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagc 193 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 32154 tattgcgagacagccagaagcagaaggtaaaatacgcggtactttattgcttagtctagc 32213 Query: 194 ttttatggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaa 253 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 32214 ttttatggaagctttaacaatttatggactagttgtggcactggcgcttttatttgcgaa 32273 Query: 254 cccttttgtttaatcct 270 ||||||||||||||||| Sbjct: 32274 cccttttgtttaatcct 32290 Score = 163 bits (82), Expect = 8e-37 Identities = 194/230 (84%), Gaps = 11/230 (4%) Strand = Plus / Plus Query: 319 agtaaattggtatttgcttccgcaattccaattatatcaatactttatttaatttactcc 378 |||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct: 32337 agtaaattggtatttgcttctgcaattccaattatatcaatactt---------tactcc 32387 Query: 379 ta-tttattactcttggaattatctatttatcgggacagataataccgcattctaggaag 437 || |||||||||| | || || ||||||||| |||||||| |||||| || | ||||| Sbjct: 32388 taatttattactcctagagttttctatttatggggacagacaataccccaccccaggaat 32447 Query: 438 ggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttag 497 ||||| ||||| ||||| |||||||| |||||| ||||| |||| |||||| |||| | Sbjct: 32448 agctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttg 32507 Query: 498 tttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 546 |||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 32508 tttagggcagtggaaagtatttttccttttattttaggaattttgggaac 32557
>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast, complete genome Length = 134551 Score = 446 bits (225), Expect = e-122 Identities = 250/257 (97%), Gaps = 1/257 (0%) Strand = Plus / Plus Query: 15 actcaccatgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagg 73 ||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 32034 actcatcatgaatccactaattgctgctgcttccgttattgctgctggattggccgtagg 32093 Query: 74 gcttgcttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaagg 133 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32094 tcttgcttctattgggcctggagttggtcaaggtactgctgcaggacaagctgtagaagg 32153 Query: 134 tattgcgagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagc 193 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 32154 tattgcgagacagccagaagcagaaggtaaaatacgcggtactttattgcttagtctagc 32213 Query: 194 ttttatggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaa 253 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 32214 ttttatggaagctttaacaatttatggactagttgtggcactggcgcttttatttgcgaa 32273 Query: 254 cccttttgtttaatcct 270 ||||||||||||||||| Sbjct: 32274 cccttttgtttaatcct 32290 Score = 163 bits (82), Expect = 8e-37 Identities = 194/230 (84%), Gaps = 11/230 (4%) Strand = Plus / Plus Query: 319 agtaaattggtatttgcttccgcaattccaattatatcaatactttatttaatttactcc 378 |||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct: 32337 agtaaattggtatttgcttctgcaattccaattatatcaatactt---------tactcc 32387 Query: 379 ta-tttattactcttggaattatctatttatcgggacagataataccgcattctaggaag 437 || |||||||||| | || || ||||||||| |||||||| |||||| || | ||||| Sbjct: 32388 taatttattactcctagagttttctatttatggggacagacaataccccaccccaggaat 32447 Query: 438 ggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttag 497 ||||| ||||| ||||| |||||||| |||||| ||||| |||| |||||| |||| | Sbjct: 32448 agctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttg 32507 Query: 498 tttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 546 |||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 32508 tttagggcagtggaaagtatttttccttttattttaggaattttgggaac 32557
>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast, complete genome Length = 134496 Score = 446 bits (225), Expect = e-122 Identities = 250/257 (97%), Gaps = 1/257 (0%) Strand = Plus / Plus Query: 15 actcaccatgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagg 73 ||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 31992 actcatcatgaatccactaattgctgctgcttccgttattgctgctggattggccgtagg 32051 Query: 74 gcttgcttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaagg 133 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32052 tcttgcttctattgggcctggagttggtcaaggtactgctgcaggacaagctgtagaagg 32111 Query: 134 tattgcgagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagc 193 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 32112 tattgcgagacagccagaagcagaaggtaaaatacgcggtactttattgcttagtctagc 32171 Query: 194 ttttatggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaa 253 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 32172 ttttatggaagctttaacaatttatggactagttgtggcactggcgcttttatttgcgaa 32231 Query: 254 cccttttgtttaatcct 270 ||||||||||||||||| Sbjct: 32232 cccttttgtttaatcct 32248 Score = 163 bits (82), Expect = 8e-37 Identities = 194/230 (84%), Gaps = 11/230 (4%) Strand = Plus / Plus Query: 319 agtaaattggtatttgcttccgcaattccaattatatcaatactttatttaatttactcc 378 |||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct: 32295 agtaaattggtatttgcttctgcaattccaattatatcaatactt---------tactcc 32345 Query: 379 ta-tttattactcttggaattatctatttatcgggacagataataccgcattctaggaag 437 || |||||||||| | || || ||||||||| |||||||| |||||| || | ||||| Sbjct: 32346 taatttattactcctagagttttctatttatggggacagacaataccccaccccaggaat 32405 Query: 438 ggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttag 497 ||||| ||||| ||||| |||||||| |||||| ||||| |||| |||||| |||| | Sbjct: 32406 agctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttg 32465 Query: 498 tttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 546 |||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 32466 tttagggcagtggaaagtatttttccttttattttaggaattttgggaac 32515
>gb|DQ490953.1| Zea mays subsp. mays genotype CMS-T mitochondrion, complete genome Length = 535825 Score = 446 bits (225), Expect = e-122 Identities = 250/257 (97%), Gaps = 1/257 (0%) Strand = Plus / Minus Query: 15 actcaccatgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagg 73 ||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 61957 actcatcatgaatccactaattgctgctgcttccgttattgctgctggattggccgtagg 61898 Query: 74 gcttgcttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaagg 133 ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 61897 gcttgcttctattgggcccggagttggtcaaggtactgctgcaggacaagctgtagaagg 61838 Query: 134 tattgcgagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagc 193 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 61837 tattgcgagacagccagaagcagaaggtaaaataagaggtactttattgcttagtctagc 61778 Query: 194 ttttatggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaa 253 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 61777 ttttatggaagctttaacaatttatggactggttgtggcactagcgcttttatttgcgaa 61718 Query: 254 cccttttgtttaatcct 270 ||||||||||||||||| Sbjct: 61717 cccttttgtttaatcct 61701 Score = 147 bits (74), Expect = 4e-32 Identities = 105/114 (92%), Gaps = 1/114 (0%) Strand = Plus / Minus Query: 434 gaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtcc 493 |||||||||| ||||| ||||| |||||||| |||||||||||| |||| ||||||||| Sbjct: 61513 gaagggctgatttgagcatgatcaatttagaggatatgctcgccctcttccttcccgtcc 61454 Query: 494 ttagtttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 546 ||||||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 61453 ttagtttaggacagtggaaagtatttttccttttattttaggaattttgggaac 61400 Score = 67.9 bits (34), Expect = 3e-08 Identities = 62/70 (88%), Gaps = 1/70 (1%) Strand = Plus / Minus Query: 319 agtaaattggtatttgcttccgcaattccaattatatcaatacttta-tttaatttactc 377 |||| |||||||||||||| | ||||| || ||||||||||||||| |||| ||||||| Sbjct: 61654 agtacattggtatttgcttatgtaattctaagtatatcaatactttactttactttactc 61595 Query: 378 ctatttatta 387 |||||||||| Sbjct: 61594 ctatttatta 61585
>gb|AC091680.7| Oryza sativa chromosome 10 BAC OSJNBa0034L04 genomic sequence, complete sequence Length = 148611 Score = 446 bits (225), Expect = e-122 Identities = 250/257 (97%), Gaps = 1/257 (0%) Strand = Plus / Plus Query: 15 actcaccatgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagg 73 ||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 145623 actcatcatgaatccactaattgctgctgcttccgttattgctgctggattggccgtagg 145682 Query: 74 gcttgcttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaagg 133 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 145683 tcttgcttctattgggcctggagttggtcaaggtactgctgcaggacaagctgtagaagg 145742 Query: 134 tattgcgagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagc 193 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 145743 tattgcgagacagccagaagcagaaggtaaaatacgcggtactttattgcttagtctagc 145802 Query: 194 ttttatggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaa 253 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 145803 ttttatggaagctttaacaatttatggactagttgtggcactggcgcttttatttgcgaa 145862 Query: 254 cccttttgtttaatcct 270 ||||||||||||||||| Sbjct: 145863 cccttttgtttaatcct 145879 Score = 163 bits (82), Expect = 8e-37 Identities = 194/230 (84%), Gaps = 11/230 (4%) Strand = Plus / Plus Query: 319 agtaaattggtatttgcttccgcaattccaattatatcaatactttatttaatttactcc 378 |||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct: 145926 agtaaattggtatttgcttctgcaattccaattatatcaatactt---------tactcc 145976 Query: 379 ta-tttattactcttggaattatctatttatcgggacagataataccgcattctaggaag 437 || |||||||||| | || || ||||||||| |||||||| |||||| || | ||||| Sbjct: 145977 taatttattactcctagagttttctatttatggggacagacaataccccaccccaggaat 146036 Query: 438 ggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttag 497 ||||| ||||| ||||| |||||||| |||||| ||||| |||| |||||| |||| | Sbjct: 146037 agctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttg 146096 Query: 498 tttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 546 |||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 146097 tttagggcagtggaaagtatttttccttttattttaggaattttgggaac 146146
>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome Length = 140384 Score = 446 bits (225), Expect = e-122 Identities = 250/257 (97%), Gaps = 1/257 (0%) Strand = Plus / Plus Query: 15 actcaccatgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagg 73 ||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 34374 actcatcatgaatccactaattgctgctgcttccgttattgctgctggattggccgtagg 34433 Query: 74 gcttgcttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaagg 133 ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 34434 gcttgcttctattgggcccggagttggtcaaggtactgctgcaggacaagctgtagaagg 34493 Query: 134 tattgcgagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagc 193 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 34494 tattgcgagacagccagaagcagaaggtaaaataagaggtactttattgcttagtctagc 34553 Query: 194 ttttatggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaa 253 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 34554 ttttatggaagctttaacaatttatggactggttgtggcactagcgcttttatttgcgaa 34613 Query: 254 cccttttgtttaatcct 270 ||||||||||||||||| Sbjct: 34614 cccttttgtttaatcct 34630 Score = 147 bits (74), Expect = 4e-32 Identities = 105/114 (92%), Gaps = 1/114 (0%) Strand = Plus / Plus Query: 434 gaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtcc 493 |||||||||| ||||| ||||| |||||||| |||||||||||| |||| ||||||||| Sbjct: 34813 gaagggctgatttgagcatgatcaatttagaggatatgctcgccctcttccttcccgtcc 34872 Query: 494 ttagtttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 546 ||||||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 34873 ttagtttaggacagtggaaagtatttttccttttattttaggaattttgggaac 34926
>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome Length = 134525 Score = 446 bits (225), Expect = e-122 Identities = 250/257 (97%), Gaps = 1/257 (0%) Strand = Plus / Plus Query: 15 actcaccatgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagg 73 ||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 32032 actcatcatgaatccactaattgctgctgcttccgttattgctgctggattggccgtagg 32091 Query: 74 gcttgcttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaagg 133 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32092 tcttgcttctattgggcctggagttggtcaaggtactgctgcaggacaagctgtagaagg 32151 Query: 134 tattgcgagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagc 193 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 32152 tattgcgagacagccagaagcagaaggtaaaatacgcggtactttattgcttagtctagc 32211 Query: 194 ttttatggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaa 253 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 32212 ttttatggaagctttaacaatttatggactagttgtggcactggcgcttttatttgcgaa 32271 Query: 254 cccttttgtttaatcct 270 ||||||||||||||||| Sbjct: 32272 cccttttgtttaatcct 32288 Score = 163 bits (82), Expect = 8e-37 Identities = 194/230 (84%), Gaps = 11/230 (4%) Strand = Plus / Plus Query: 319 agtaaattggtatttgcttccgcaattccaattatatcaatactttatttaatttactcc 378 |||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct: 32335 agtaaattggtatttgcttctgcaattccaattatatcaatactt---------tactcc 32385 Query: 379 ta-tttattactcttggaattatctatttatcgggacagataataccgcattctaggaag 437 || |||||||||| | || || ||||||||| |||||||| |||||| || | ||||| Sbjct: 32386 taatttattactcctagagttttctatttatggggacagacaataccccaccccaggaat 32445 Query: 438 ggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttag 497 ||||| ||||| ||||| |||||||| |||||| ||||| |||| |||||| |||| | Sbjct: 32446 agctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttg 32505 Query: 498 tttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 546 |||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 32506 tttagggcagtggaaagtatttttccttttattttaggaattttgggaac 32555
>emb|X05254.1|CHZMATPH Z.mays chloroplast CF(0)=coupling factor for photophosphorylation Length = 468 Score = 446 bits (225), Expect = e-122 Identities = 250/257 (97%), Gaps = 1/257 (0%) Strand = Plus / Plus Query: 15 actcaccatgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagg 73 ||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 104 actcatcatgaatccactaattgctgctgcttccgttattgctgctggattggccgtagg 163 Query: 74 gcttgcttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaagg 133 ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 164 gcttgcttctattgggcccggagttggtcaaggtactgctgcaggacaagctgtagaagg 223 Query: 134 tattgcgagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagc 193 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 224 tattgcgagacagccagaagcagaaggtaaaataagaggtactttattgcttagtctagc 283 Query: 194 ttttatggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaa 253 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 284 ttttatggaagctttaacaatttatggactggttgtggcactagcgcttttatttgcgaa 343 Query: 254 cccttttgtttaatcct 270 ||||||||||||||||| Sbjct: 344 cccttttgtttaatcct 360
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 446 bits (225), Expect = e-122 Identities = 250/257 (97%), Gaps = 1/257 (0%) Strand = Plus / Minus Query: 15 actcaccatgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagg 73 ||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 19962567 actcatcatgaatccactaattgctgctgcttccgttattgctgctggattggccgtagg 19962508 Query: 74 gcttgcttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaagg 133 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19962507 tcttgcttctattgggcctggagttggtcaaggtactgctgcaggacaagctgtagaagg 19962448 Query: 134 tattgcgagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagc 193 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 19962447 tattgcgagacagccagaagcagaaggtaaaatacgcggtactttattgcttagtctagc 19962388 Query: 194 ttttatggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaa 253 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 19962387 ttttatggaagctttaacaatttatggactagttgtggcactggcgcttttatttgcgaa 19962328 Query: 254 cccttttgtttaatcct 270 ||||||||||||||||| Sbjct: 19962327 cccttttgtttaatcct 19962311 Score = 315 bits (159), Expect = 8e-83 Identities = 165/167 (98%) Strand = Plus / Plus Query: 104 aggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcagaaggtaa 163 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10323979 aggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcagaaggtaa 10324038 Query: 164 aatacgaggtactttattgcttagtctagcttttatggaagctttaacaatttatggact 223 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10324039 aatacgcggtactttattgcttagtctagcttttatggaagctttaacaatttatggact 10324098 Query: 224 agttgtggcactagcgcttttatttgcgaacccttttgtttaatcct 270 |||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 10324099 agttgtggcactggcgcttttatttgcgaacccttttgtttaatcct 10324145 Score = 224 bits (113), Expect = 2e-55 Identities = 132/137 (96%), Gaps = 1/137 (0%) Strand = Plus / Plus Query: 15 actcaccatgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagg 73 ||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 10323844 actcatcatgaatccactaattgctgctgcttccgttattgctgctggattggccgtagg 10323903 Query: 74 gcttgcttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaagg 133 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10323904 tcttgcttctattgggcctggagttggtcaaggtactgctgcaggacaagctgtagaagg 10323963 Query: 134 tattgcgagacagccag 150 ||||||||||||||||| Sbjct: 10323964 tattgcgagacagccag 10323980 Score = 163 bits (82), Expect = 8e-37 Identities = 194/230 (84%), Gaps = 11/230 (4%) Strand = Plus / Minus Query: 319 agtaaattggtatttgcttccgcaattccaattatatcaatactttatttaatttactcc 378 |||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct: 19962264 agtaaattggtatttgcttctgcaattccaattatatcaatactt---------tactcc 19962214 Query: 379 ta-tttattactcttggaattatctatttatcgggacagataataccgcattctaggaag 437 || |||||||||| | || || ||||||||| |||||||| |||||| || | ||||| Sbjct: 19962213 taatttattactcctagagttttctatttatggggacagacaataccccaccccaggaat 19962154 Query: 438 ggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttag 497 ||||| ||||| ||||| |||||||| |||||| ||||| |||| |||||| |||| | Sbjct: 19962153 agctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttg 19962094 Query: 498 tttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 546 |||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 19962093 tttagggcagtggaaagtatttttccttttattttaggaattttgggaac 19962044 Score = 163 bits (82), Expect = 8e-37 Identities = 194/230 (84%), Gaps = 11/230 (4%) Strand = Plus / Plus Query: 319 agtaaattggtatttgcttccgcaattccaattatatcaatactttatttaatttactcc 378 |||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct: 10324192 agtaaattggtatttgcttctgcaattccaattatatcaatactt---------tactcc 10324242 Query: 379 ta-tttattactcttggaattatctatttatcgggacagataataccgcattctaggaag 437 || |||||||||| | || || ||||||||| |||||||| |||||| || | ||||| Sbjct: 10324243 taatttattactcctagagttttctatttatggggacagacaataccccaccccaggaat 10324302 Query: 438 ggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttag 497 ||||| ||||| ||||| |||||||| |||||| ||||| |||| |||||| |||| | Sbjct: 10324303 agctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttg 10324362 Query: 498 tttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 546 |||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 10324363 tttagggcagtggaaagtatttttccttttattttaggaattttgggaac 10324412
>gb|AC074232.11| Oryza sativa chromosome 10 BAC OSJNBb0005J14 genomic sequence, complete sequence Length = 116932 Score = 446 bits (225), Expect = e-122 Identities = 250/257 (97%), Gaps = 1/257 (0%) Strand = Plus / Plus Query: 15 actcaccatgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagg 73 ||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 23476 actcatcatgaatccactaattgctgctgcttccgttattgctgctggattggccgtagg 23535 Query: 74 gcttgcttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaagg 133 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23536 tcttgcttctattgggcctggagttggtcaaggtactgctgcaggacaagctgtagaagg 23595 Query: 134 tattgcgagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagc 193 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 23596 tattgcgagacagccagaagcagaaggtaaaatacgcggtactttattgcttagtctagc 23655 Query: 194 ttttatggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaa 253 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 23656 ttttatggaagctttaacaatttatggactagttgtggcactggcgcttttatttgcgaa 23715 Query: 254 cccttttgtttaatcct 270 ||||||||||||||||| Sbjct: 23716 cccttttgtttaatcct 23732 Score = 163 bits (82), Expect = 8e-37 Identities = 194/230 (84%), Gaps = 11/230 (4%) Strand = Plus / Plus Query: 319 agtaaattggtatttgcttccgcaattccaattatatcaatactttatttaatttactcc 378 |||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct: 23779 agtaaattggtatttgcttctgcaattccaattatatcaatactt---------tactcc 23829 Query: 379 ta-tttattactcttggaattatctatttatcgggacagataataccgcattctaggaag 437 || |||||||||| | || || ||||||||| |||||||| |||||| || | ||||| Sbjct: 23830 taatttattactcctagagttttctatttatggggacagacaataccccaccccaggaat 23889 Query: 438 ggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttag 497 ||||| ||||| ||||| |||||||| |||||| ||||| |||| |||||| |||| | Sbjct: 23890 agctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttg 23949 Query: 498 tttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 546 |||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 23950 tttagggcagtggaaagtatttttccttttattttaggaattttgggaac 23999
>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome Length = 140454 Score = 446 bits (225), Expect = e-122 Identities = 250/257 (97%), Gaps = 1/257 (0%) Strand = Plus / Plus Query: 15 actcaccatgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagg 73 ||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 34372 actcatcatgaatccactaattgctgctgcttccgttattgctgctggattggccgtagg 34431 Query: 74 gcttgcttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaagg 133 ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 34432 gcttgcttctattgggcccggagttggtcaaggtactgctgcaggacaagctgtagaagg 34491 Query: 134 tattgcgagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagc 193 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 34492 tattgcgagacagccagaagcagaaggtaaaataagaggtactttattgcttagtctagc 34551 Query: 194 ttttatggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaa 253 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 34552 ttttatggaagctttaacaatttatggactggttgtggcactagcgcttttatttgcgaa 34611 Query: 254 cccttttgtttaatcct 270 ||||||||||||||||| Sbjct: 34612 cccttttgtttaatcct 34628 Score = 147 bits (74), Expect = 4e-32 Identities = 105/114 (92%), Gaps = 1/114 (0%) Strand = Plus / Plus Query: 434 gaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtcc 493 |||||||||| ||||| ||||| |||||||| |||||||||||| |||| ||||||||| Sbjct: 34811 gaagggctgatttgagcatgatcaatttagaggatatgctcgccctcttccttcccgtcc 34870 Query: 494 ttagtttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 546 ||||||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 34871 ttagtttaggacagtggaaagtatttttccttttattttaggaattttgggaac 34924 Score = 40.1 bits (20), Expect = 7.5 Identities = 57/69 (82%), Gaps = 4/69 (5%) Strand = Plus / Plus Query: 319 agtaaattggtatttgcttccgcaattccaattatatcaatactttatttaatttactcc 378 |||| ||||| |||||||| | ||||| || ||||||||||| |||| |||||||| Sbjct: 34675 agtacattggcatttgcttatgtaattctaagtatatcaatac----tttactttactcc 34730 Query: 379 tatttatta 387 ||||||||| Sbjct: 34731 tatttatta 34739
>dbj|AK121120.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074F07, full insert sequence Length = 3220 Score = 446 bits (225), Expect = e-122 Identities = 250/257 (97%), Gaps = 1/257 (0%) Strand = Plus / Plus Query: 15 actcaccatgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagg 73 ||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1650 actcatcatgaatccactaattgctgctgcttccgttattgctgctggattggccgtagg 1709 Query: 74 gcttgcttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaagg 133 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1710 tcttgcttctattgggcctggagttggtcaaggtactgctgcaggacaagctgtagaagg 1769 Query: 134 tattgcgagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagc 193 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 1770 tattgcgagacagccagaagcagaaggtaaaatacgcggtactttattgcttagtctagc 1829 Query: 194 ttttatggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaa 253 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 1830 ttttatggaagctttaacaatttatggactagttgtggcactggcgcttttatttgcgaa 1889 Query: 254 cccttttgtttaatcct 270 ||||||||||||||||| Sbjct: 1890 cccttttgtttaatcct 1906 Score = 163 bits (82), Expect = 8e-37 Identities = 194/230 (84%), Gaps = 11/230 (4%) Strand = Plus / Plus Query: 319 agtaaattggtatttgcttccgcaattccaattatatcaatactttatttaatttactcc 378 |||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct: 1953 agtaaattggtatttgcttctgcaattccaattatatcaatactt---------tactcc 2003 Query: 379 ta-tttattactcttggaattatctatttatcgggacagataataccgcattctaggaag 437 || |||||||||| | || || ||||||||| |||||||| |||||| || | ||||| Sbjct: 2004 taatttattactcctagagttttctatttatggggacagacaataccccaccccaggaat 2063 Query: 438 ggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttag 497 ||||| ||||| ||||| |||||||| |||||| ||||| |||| |||||| |||| | Sbjct: 2064 agctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttg 2123 Query: 498 tttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 546 |||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 2124 tttagggcagtggaaagtatttttccttttattttaggaattttgggaac 2173
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 446 bits (225), Expect = e-122 Identities = 250/257 (97%), Gaps = 1/257 (0%) Strand = Plus / Minus Query: 15 actcaccatgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagg 73 ||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 19973843 actcatcatgaatccactaattgctgctgcttccgttattgctgctggattggccgtagg 19973784 Query: 74 gcttgcttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaagg 133 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19973783 tcttgcttctattgggcctggagttggtcaaggtactgctgcaggacaagctgtagaagg 19973724 Query: 134 tattgcgagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagc 193 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 19973723 tattgcgagacagccagaagcagaaggtaaaatacgcggtactttattgcttagtctagc 19973664 Query: 194 ttttatggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaa 253 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 19973663 ttttatggaagctttaacaatttatggactagttgtggcactggcgcttttatttgcgaa 19973604 Query: 254 cccttttgtttaatcct 270 ||||||||||||||||| Sbjct: 19973603 cccttttgtttaatcct 19973587 Score = 315 bits (159), Expect = 8e-83 Identities = 165/167 (98%) Strand = Plus / Plus Query: 104 aggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcagaaggtaa 163 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10330018 aggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcagaaggtaa 10330077 Query: 164 aatacgaggtactttattgcttagtctagcttttatggaagctttaacaatttatggact 223 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10330078 aatacgcggtactttattgcttagtctagcttttatggaagctttaacaatttatggact 10330137 Query: 224 agttgtggcactagcgcttttatttgcgaacccttttgtttaatcct 270 |||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 10330138 agttgtggcactggcgcttttatttgcgaacccttttgtttaatcct 10330184 Score = 224 bits (113), Expect = 2e-55 Identities = 132/137 (96%), Gaps = 1/137 (0%) Strand = Plus / Plus Query: 15 actcaccatgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagg 73 ||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 10329883 actcatcatgaatccactaattgctgctgcttccgttattgctgctggattggccgtagg 10329942 Query: 74 gcttgcttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaagg 133 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10329943 tcttgcttctattgggcctggagttggtcaaggtactgctgcaggacaagctgtagaagg 10330002 Query: 134 tattgcgagacagccag 150 ||||||||||||||||| Sbjct: 10330003 tattgcgagacagccag 10330019 Score = 163 bits (82), Expect = 8e-37 Identities = 194/230 (84%), Gaps = 11/230 (4%) Strand = Plus / Minus Query: 319 agtaaattggtatttgcttccgcaattccaattatatcaatactttatttaatttactcc 378 |||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct: 19973540 agtaaattggtatttgcttctgcaattccaattatatcaatactt---------tactcc 19973490 Query: 379 ta-tttattactcttggaattatctatttatcgggacagataataccgcattctaggaag 437 || |||||||||| | || || ||||||||| |||||||| |||||| || | ||||| Sbjct: 19973489 taatttattactcctagagttttctatttatggggacagacaataccccaccccaggaat 19973430 Query: 438 ggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttag 497 ||||| ||||| ||||| |||||||| |||||| ||||| |||| |||||| |||| | Sbjct: 19973429 agctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttg 19973370 Query: 498 tttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 546 |||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 19973369 tttagggcagtggaaagtatttttccttttattttaggaattttgggaac 19973320 Score = 163 bits (82), Expect = 8e-37 Identities = 194/230 (84%), Gaps = 11/230 (4%) Strand = Plus / Plus Query: 319 agtaaattggtatttgcttccgcaattccaattatatcaatactttatttaatttactcc 378 |||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct: 10330231 agtaaattggtatttgcttctgcaattccaattatatcaatactt---------tactcc 10330281 Query: 379 ta-tttattactcttggaattatctatttatcgggacagataataccgcattctaggaag 437 || |||||||||| | || || ||||||||| |||||||| |||||| || | ||||| Sbjct: 10330282 taatttattactcctagagttttctatttatggggacagacaataccccaccccaggaat 10330341 Query: 438 ggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttag 497 ||||| ||||| ||||| |||||||| |||||| ||||| |||| |||||| |||| | Sbjct: 10330342 agctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttg 10330401 Query: 498 tttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 546 |||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 10330402 tttagggcagtggaaagtatttttccttttattttaggaattttgggaac 10330451
>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome Length = 134494 Score = 446 bits (225), Expect = e-122 Identities = 250/257 (97%), Gaps = 1/257 (0%) Strand = Plus / Plus Query: 15 actcaccatgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagg 73 ||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 31966 actcatcatgaatccactaattgctgctgcttccgttattgctgctggattggccgtagg 32025 Query: 74 gcttgcttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaagg 133 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 32026 tcttgcttctattgggcctggagttggtcaaggtactgctgcaggacaagctgtagaagg 32085 Query: 134 tattgcgagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagc 193 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 32086 tattgcgagacagccagaagcagaaggtaaaatacgcggtactttattgcttagtctagc 32145 Query: 194 ttttatggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaa 253 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 32146 ttttatggaagctttaacaatttatggactagttgtggcactggcgcttttatttgcgaa 32205 Query: 254 cccttttgtttaatcct 270 ||||||||||||||||| Sbjct: 32206 cccttttgtttaatcct 32222 Score = 163 bits (82), Expect = 8e-37 Identities = 194/230 (84%), Gaps = 11/230 (4%) Strand = Plus / Plus Query: 319 agtaaattggtatttgcttccgcaattccaattatatcaatactttatttaatttactcc 378 |||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct: 32269 agtaaattggtatttgcttctgcaattccaattatatcaatactt---------tactcc 32319 Query: 379 ta-tttattactcttggaattatctatttatcgggacagataataccgcattctaggaag 437 || |||||||||| | || || ||||||||| |||||||| |||||| || | ||||| Sbjct: 32320 taatttattactcctagagttttctatttatggggacagacaataccccaccccaggaat 32379 Query: 438 ggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttag 497 ||||| ||||| ||||| |||||||| |||||| ||||| |||| |||||| |||| | Sbjct: 32380 agctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttg 32439 Query: 498 tttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 546 |||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 32440 tttagggcagtggaaagtatttttccttttattttaggaattttgggaac 32489
>gb|M27557.1|MZECPATPC Maize chloroplast phosphorylation coupling factor alpha subunit (atpA) and proteolipid subunit (atpH) genes, complete cds Length = 2216 Score = 446 bits (225), Expect = e-122 Identities = 250/257 (97%), Gaps = 1/257 (0%) Strand = Plus / Plus Query: 15 actcaccatgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagg 73 ||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 104 actcatcatgaatccactaattgctgctgcttccgttattgctgctggattggccgtagg 163 Query: 74 gcttgcttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaagg 133 ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 164 gcttgcttctattgggcccggagttggtcaaggtactgctgcaggacaagctgtagaagg 223 Query: 134 tattgcgagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagc 193 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 224 tattgcgagacagccagaagcagaaggtaaaataagaggtactttattgcttagtctagc 283 Query: 194 ttttatggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaa 253 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 284 ttttatggaagctttaacaatttatggactggttgtggcactagcgcttttatttgcgaa 343 Query: 254 cccttttgtttaatcct 270 ||||||||||||||||| Sbjct: 344 cccttttgtttaatcct 360
>gb|BT024124.1| Zea mays clone EL01N0450D02 mRNA sequence Length = 1622 Score = 438 bits (221), Expect = e-120 Identities = 249/257 (96%), Gaps = 1/257 (0%) Strand = Plus / Plus Query: 15 actcaccatgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagg 73 ||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 14 actcatcatgaatccactaattgctgctgcttccgttattgctgctggattggccgtagg 73 Query: 74 gcttgcttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaagg 133 ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 74 gcttgcttctattgggcccggagttggtcaaggtactgctgcaggacaagctgtagaagg 133 Query: 134 tattgcgagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagc 193 |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct: 134 tattgcgagacagccagaagcagaaggtaaaataagagggactttattgcttagtctagc 193 Query: 194 ttttatggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaa 253 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 194 ttttatggaagctttaacaatttatggactggttgtggcactagcgcttttatttgcgaa 253 Query: 254 cccttttgtttaatcct 270 ||||||||||||||||| Sbjct: 254 cccttttgtttaatcct 270 Score = 147 bits (74), Expect = 4e-32 Identities = 105/114 (92%), Gaps = 1/114 (0%) Strand = Plus / Plus Query: 434 gaagggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtcc 493 |||||||||| ||||| ||||| |||||||| |||||||||||| |||| ||||||||| Sbjct: 453 gaagggctgatttgagcatgatcaatttagaggatatgctcgccctcttccttcccgtcc 512 Query: 494 ttagtttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 546 ||||||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 513 ttagtttaggacagtggaaagtatttttccttttattttaggaattttgggaac 566 Score = 40.1 bits (20), Expect = 7.5 Identities = 57/69 (82%), Gaps = 4/69 (5%) Strand = Plus / Plus Query: 319 agtaaattggtatttgcttccgcaattccaattatatcaatactttatttaatttactcc 378 |||| ||||| |||||||| | ||||| || ||||||||||| |||| |||||||| Sbjct: 317 agtacattggcatttgcttatgtaattctaagtatatcaatac----tttactttactcc 372 Query: 379 tatttatta 387 ||||||||| Sbjct: 373 tatttatta 381
>ref|NM_197456.1| Oryza sativa (japonica cultivar-group) ATPase III subunit (OSJNBa0034L04.42), mRNA Length = 246 Score = 432 bits (218), Expect = e-118 Identities = 240/246 (97%), Gaps = 1/246 (0%) Strand = Plus / Plus Query: 22 atgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagggcttgct 80 |||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct: 1 atgaatccactaattgctgctgcttccgttattgctgctggattggccgtaggtcttgct 60 Query: 81 tctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgcg 140 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 tctattgggcctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgcg 120 Query: 141 agacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttatg 200 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 121 agacagccagaagcagaaggtaaaatacgcggtactttattgcttagtctagcttttatg 180 Query: 201 gaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaaccctttt 260 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 181 gaagctttaacaatttatggactagttgtggcactggcgcttttatttgcgaaccctttt 240 Query: 261 gtttaa 266 |||||| Sbjct: 241 gtttaa 246
>ref|NM_195980.1| Oryza sativa (japonica cultivar-group) putative ATPase III subunit from chromosome 10 chloroplast insertion (OSJNBb0075K12.30), mRNA Length = 246 Score = 432 bits (218), Expect = e-118 Identities = 240/246 (97%), Gaps = 1/246 (0%) Strand = Plus / Plus Query: 22 atgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagggcttgct 80 |||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct: 1 atgaatccactaattgctgctgcttccgttattgctgctggattggccgtaggtcttgct 60 Query: 81 tctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgcg 140 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 tctattgggcctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgcg 120 Query: 141 agacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttatg 200 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 121 agacagccagaagcagaaggtaaaatacgcggtactttattgcttagtctagcttttatg 180 Query: 201 gaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaaccctttt 260 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 181 gaagctttaacaatttatggactagttgtggcactggcgcttttatttgcgaaccctttt 240 Query: 261 gtttaa 266 |||||| Sbjct: 241 gtttaa 246
>gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-11 mitochondrion, complete genome Length = 491515 Score = 404 bits (204), Expect = e-109 Identities = 216/220 (98%) Strand = Plus / Minus Query: 51 attgctgctggattggccgtagggcttgcttctattggacctggagttggtcaaggtact 110 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 269698 attgctgctggattggccgtagggcttgcttctattgggcctggagttggtcaaggtact 269639 Query: 111 gctgcaggacaagctgtagaaggtattgcgagacagccagaagcagaaggtaaaatacga 170 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 269638 gctgcaggacaagctgtagaaggtattgcgagacagccagaagctgaaggtaaaatacga 269579 Query: 171 ggtactttattgcttagtctagcttttatggaagctttaacaatttatggactagttgtg 230 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 269578 ggtactttattgcttagtctagcttttatggaagctttaacaatttatggactagttgtg 269519 Query: 231 gcactagcgcttttatttgcgaacccttttgtttaatcct 270 |||||||||||||||||||| |||||||||||| |||||| Sbjct: 269518 gcactagcgcttttatttgcaaacccttttgttaaatcct 269479 Score = 204 bits (103), Expect = 2e-49 Identities = 181/207 (87%), Gaps = 10/207 (4%) Strand = Plus / Minus Query: 319 agtaaattggtatttgcttccgcaattccaattatatcaatactttatttaatttactcc 378 |||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct: 269432 agtaaattggtatttgcttctgcaattccaattatatcaatactt---------tactcc 269382 Query: 379 tatttattactcttggaattatctatttatcgggacagataataccgcattctaggaagg 438 |||||||||||| |||||||||||||||||||||||||| |||||| || | |||||| Sbjct: 269381 tatttattactcctggaattatctatttatcgggacagacaataccccaccccaggaaga 269322 Query: 439 gctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttagt 498 ||||| ||||| || || |||||||| ||||||||||||||||| |||||||||||||| Sbjct: 269321 gctgatttgaggataatcaatttagaggatatgctcgccttcttccttcccgtccttagt 269262 Query: 499 ttaggaaagtggaaagt-tttttcctt 524 |||||| |||||||||| ||||||||| Sbjct: 269261 ttaggacagtggaaagtctttttcctt 269235
>gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA64S mitochondrion, complete genome Length = 490673 Score = 404 bits (204), Expect = e-109 Identities = 216/220 (98%) Strand = Plus / Minus Query: 51 attgctgctggattggccgtagggcttgcttctattggacctggagttggtcaaggtact 110 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 268889 attgctgctggattggccgtagggcttgcttctattgggcctggagttggtcaaggtact 268830 Query: 111 gctgcaggacaagctgtagaaggtattgcgagacagccagaagcagaaggtaaaatacga 170 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 268829 gctgcaggacaagctgtagaaggtattgcgagacagccagaagctgaaggtaaaatacga 268770 Query: 171 ggtactttattgcttagtctagcttttatggaagctttaacaatttatggactagttgtg 230 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 268769 ggtactttattgcttagtctagcttttatggaagctttaacaatttatggactagttgtg 268710 Query: 231 gcactagcgcttttatttgcgaacccttttgtttaatcct 270 |||||||||||||||||||| |||||||||||| |||||| Sbjct: 268709 gcactagcgcttttatttgcaaacccttttgttaaatcct 268670 Score = 204 bits (103), Expect = 2e-49 Identities = 181/207 (87%), Gaps = 10/207 (4%) Strand = Plus / Minus Query: 319 agtaaattggtatttgcttccgcaattccaattatatcaatactttatttaatttactcc 378 |||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct: 268623 agtaaattggtatttgcttctgcaattccaattatatcaatactt---------tactcc 268573 Query: 379 tatttattactcttggaattatctatttatcgggacagataataccgcattctaggaagg 438 |||||||||||| |||||||||||||||||||||||||| |||||| || | |||||| Sbjct: 268572 tatttattactcctggaattatctatttatcgggacagacaataccccaccccaggaaga 268513 Query: 439 gctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttagt 498 ||||| ||||| || || |||||||| ||||||||||||||||| |||||||||||||| Sbjct: 268512 gctgatttgaggataatcaatttagaggatatgctcgccttcttccttcccgtccttagt 268453 Query: 499 ttaggaaagtggaaagt-tttttcctt 524 |||||| |||||||||| ||||||||| Sbjct: 268452 ttaggacagtggaaagtctttttcctt 268426
>gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare mitochondrion, complete genome Length = 490669 Score = 404 bits (204), Expect = e-109 Identities = 216/220 (98%) Strand = Plus / Minus Query: 51 attgctgctggattggccgtagggcttgcttctattggacctggagttggtcaaggtact 110 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 268886 attgctgctggattggccgtagggcttgcttctattgggcctggagttggtcaaggtact 268827 Query: 111 gctgcaggacaagctgtagaaggtattgcgagacagccagaagcagaaggtaaaatacga 170 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 268826 gctgcaggacaagctgtagaaggtattgcgagacagccagaagctgaaggtaaaatacga 268767 Query: 171 ggtactttattgcttagtctagcttttatggaagctttaacaatttatggactagttgtg 230 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 268766 ggtactttattgcttagtctagcttttatggaagctttaacaatttatggactagttgtg 268707 Query: 231 gcactagcgcttttatttgcgaacccttttgtttaatcct 270 |||||||||||||||||||| |||||||||||| |||||| Sbjct: 268706 gcactagcgcttttatttgcaaacccttttgttaaatcct 268667 Score = 204 bits (103), Expect = 2e-49 Identities = 181/207 (87%), Gaps = 10/207 (4%) Strand = Plus / Minus Query: 319 agtaaattggtatttgcttccgcaattccaattatatcaatactttatttaatttactcc 378 |||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct: 268620 agtaaattggtatttgcttctgcaattccaattatatcaatactt---------tactcc 268570 Query: 379 tatttattactcttggaattatctatttatcgggacagataataccgcattctaggaagg 438 |||||||||||| |||||||||||||||||||||||||| |||||| || | |||||| Sbjct: 268569 tatttattactcctggaattatctatttatcgggacagacaataccccaccccaggaaga 268510 Query: 439 gctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttagt 498 ||||| ||||| || || |||||||| ||||||||||||||||| |||||||||||||| Sbjct: 268509 gctgatttgaggataatcaatttagaggatatgctcgccttcttccttcccgtccttagt 268450 Query: 499 ttaggaaagtggaaagt-tttttcctt 524 |||||| |||||||||| ||||||||| Sbjct: 268449 ttaggacagtggaaagtctttttcctt 268423
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 404 bits (204), Expect = e-109 Identities = 216/220 (98%) Strand = Plus / Plus Query: 51 attgctgctggattggccgtagggcttgcttctattggacctggagttggtcaaggtact 110 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 20690817 attgctgctggattggccgtagggcttgcttctattgggcctggagttggtcaaggtact 20690876 Query: 111 gctgcaggacaagctgtagaaggtattgcgagacagccagaagcagaaggtaaaatacga 170 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 20690877 gctgcaggacaagctgtagaaggtattgcgagacagccagaagctgaaggtaaaatacga 20690936 Query: 171 ggtactttattgcttagtctagcttttatggaagctttaacaatttatggactagttgtg 230 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 20690937 ggtactttattgcttagtctagcttttatggaagctttaacaatttatggactagttgtg 20690996 Query: 231 gcactagcgcttttatttgcgaacccttttgtttaatcct 270 |||||||||||||||||||| |||||||||||| |||||| Sbjct: 20690997 gcactagcgcttttatttgcaaacccttttgttaaatcct 20691036 Score = 204 bits (103), Expect = 2e-49 Identities = 181/207 (87%), Gaps = 10/207 (4%) Strand = Plus / Plus Query: 319 agtaaattggtatttgcttccgcaattccaattatatcaatactttatttaatttactcc 378 |||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct: 20691083 agtaaattggtatttgcttctgcaattccaattatatcaatactt---------tactcc 20691133 Query: 379 tatttattactcttggaattatctatttatcgggacagataataccgcattctaggaagg 438 |||||||||||| |||||||||||||||||||||||||| |||||| || | |||||| Sbjct: 20691134 tatttattactcctggaattatctatttatcgggacagacaataccccaccccaggaaga 20691193 Query: 439 gctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttagt 498 ||||| ||||| || || |||||||| ||||||||||||||||| |||||||||||||| Sbjct: 20691194 gctgatttgaggataatcaatttagaggatatgctcgccttcttccttcccgtccttagt 20691253 Query: 499 ttaggaaagtggaaagt-tttttcctt 524 |||||| |||||||||| ||||||||| Sbjct: 20691254 ttaggacagtggaaagtctttttcctt 20691280
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 404 bits (204), Expect = e-109 Identities = 216/220 (98%) Strand = Plus / Plus Query: 51 attgctgctggattggccgtagggcttgcttctattggacctggagttggtcaaggtact 110 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 20617031 attgctgctggattggccgtagggcttgcttctattgggcctggagttggtcaaggtact 20617090 Query: 111 gctgcaggacaagctgtagaaggtattgcgagacagccagaagcagaaggtaaaatacga 170 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 20617091 gctgcaggacaagctgtagaaggtattgcgagacagccagaagctgaaggtaaaatacga 20617150 Query: 171 ggtactttattgcttagtctagcttttatggaagctttaacaatttatggactagttgtg 230 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 20617151 ggtactttattgcttagtctagcttttatggaagctttaacaatttatggactagttgtg 20617210 Query: 231 gcactagcgcttttatttgcgaacccttttgtttaatcct 270 |||||||||||||||||||| |||||||||||| |||||| Sbjct: 20617211 gcactagcgcttttatttgcaaacccttttgttaaatcct 20617250 Score = 204 bits (103), Expect = 2e-49 Identities = 181/207 (87%), Gaps = 10/207 (4%) Strand = Plus / Plus Query: 319 agtaaattggtatttgcttccgcaattccaattatatcaatactttatttaatttactcc 378 |||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct: 20617297 agtaaattggtatttgcttctgcaattccaattatatcaatactt---------tactcc 20617347 Query: 379 tatttattactcttggaattatctatttatcgggacagataataccgcattctaggaagg 438 |||||||||||| |||||||||||||||||||||||||| |||||| || | |||||| Sbjct: 20617348 tatttattactcctggaattatctatttatcgggacagacaataccccaccccaggaaga 20617407 Query: 439 gctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttagt 498 ||||| ||||| || || |||||||| ||||||||||||||||| |||||||||||||| Sbjct: 20617408 gctgatttgaggataatcaatttagaggatatgctcgccttcttccttcccgtccttagt 20617467 Query: 499 ttaggaaagtggaaagt-tttttcctt 524 |||||| |||||||||| ||||||||| Sbjct: 20617468 ttaggacagtggaaagtctttttcctt 20617494
>emb|AL713949.4|CNS07YPS Oryza sativa chromosome 12, . BAC OJ1521_B04 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 113752 Score = 404 bits (204), Expect = e-109 Identities = 216/220 (98%) Strand = Plus / Plus Query: 51 attgctgctggattggccgtagggcttgcttctattggacctggagttggtcaaggtact 110 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 101479 attgctgctggattggccgtagggcttgcttctattgggcctggagttggtcaaggtact 101538 Query: 111 gctgcaggacaagctgtagaaggtattgcgagacagccagaagcagaaggtaaaatacga 170 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 101539 gctgcaggacaagctgtagaaggtattgcgagacagccagaagctgaaggtaaaatacga 101598 Query: 171 ggtactttattgcttagtctagcttttatggaagctttaacaatttatggactagttgtg 230 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 101599 ggtactttattgcttagtctagcttttatggaagctttaacaatttatggactagttgtg 101658 Query: 231 gcactagcgcttttatttgcgaacccttttgtttaatcct 270 |||||||||||||||||||| |||||||||||| |||||| Sbjct: 101659 gcactagcgcttttatttgcaaacccttttgttaaatcct 101698 Score = 204 bits (103), Expect = 2e-49 Identities = 181/207 (87%), Gaps = 10/207 (4%) Strand = Plus / Plus Query: 319 agtaaattggtatttgcttccgcaattccaattatatcaatactttatttaatttactcc 378 |||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct: 101745 agtaaattggtatttgcttctgcaattccaattatatcaatactt---------tactcc 101795 Query: 379 tatttattactcttggaattatctatttatcgggacagataataccgcattctaggaagg 438 |||||||||||| |||||||||||||||||||||||||| |||||| || | |||||| Sbjct: 101796 tatttattactcctggaattatctatttatcgggacagacaataccccaccccaggaaga 101855 Query: 439 gctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttagt 498 ||||| ||||| || || |||||||| ||||||||||||||||| |||||||||||||| Sbjct: 101856 gctgatttgaggataatcaatttagaggatatgctcgccttcttccttcccgtccttagt 101915 Query: 499 ttaggaaagtggaaagt-tttttcctt 524 |||||| |||||||||| ||||||||| Sbjct: 101916 ttaggacagtggaaagtctttttcctt 101942
>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome Length = 490520 Score = 404 bits (204), Expect = e-109 Identities = 216/220 (98%) Strand = Plus / Minus Query: 51 attgctgctggattggccgtagggcttgcttctattggacctggagttggtcaaggtact 110 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 268753 attgctgctggattggccgtagggcttgcttctattgggcctggagttggtcaaggtact 268694 Query: 111 gctgcaggacaagctgtagaaggtattgcgagacagccagaagcagaaggtaaaatacga 170 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 268693 gctgcaggacaagctgtagaaggtattgcgagacagccagaagctgaaggtaaaatacga 268634 Query: 171 ggtactttattgcttagtctagcttttatggaagctttaacaatttatggactagttgtg 230 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 268633 ggtactttattgcttagtctagcttttatggaagctttaacaatttatggactagttgtg 268574 Query: 231 gcactagcgcttttatttgcgaacccttttgtttaatcct 270 |||||||||||||||||||| |||||||||||| |||||| Sbjct: 268573 gcactagcgcttttatttgcaaacccttttgttaaatcct 268534 Score = 204 bits (103), Expect = 2e-49 Identities = 181/207 (87%), Gaps = 10/207 (4%) Strand = Plus / Minus Query: 319 agtaaattggtatttgcttccgcaattccaattatatcaatactttatttaatttactcc 378 |||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct: 268487 agtaaattggtatttgcttctgcaattccaattatatcaatactt---------tactcc 268437 Query: 379 tatttattactcttggaattatctatttatcgggacagataataccgcattctaggaagg 438 |||||||||||| |||||||||||||||||||||||||| |||||| || | |||||| Sbjct: 268436 tatttattactcctggaattatctatttatcgggacagacaataccccaccccaggaaga 268377 Query: 439 gctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttagt 498 ||||| ||||| || || |||||||| ||||||||||||||||| |||||||||||||| Sbjct: 268376 gctgatttgaggataatcaatttagaggatatgctcgccttcttccttcccgtccttagt 268317 Query: 499 ttaggaaagtggaaagt-tttttcctt 524 |||||| |||||||||| ||||||||| Sbjct: 268316 ttaggacagtggaaagtctttttcctt 268290
>emb|X02595.1|CHTAATP1 T.aestivum chloroplast gene encoding ATP synthase CF-O subunit I & III Length = 2007 Score = 400 bits (202), Expect = e-108 Identities = 231/238 (97%), Gaps = 2/238 (0%) Strand = Plus / Plus Query: 319 agtaaattggtatttgcttccgcaattccaattatatcaatactttatttaatttactcc 378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 116 agtaaattggtatttgcttccgcaattccaattatatcaatactttatttaatttactcc 175 Query: 379 tatttattactcttggaattatctatttatcgggacagataataccgcattctaggaagg 438 |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 176 tatttattactcctggaattatctatttatcgggacagataataccccattctaggaagg 235 Query: 439 gct-gagtt-gagtatgattaatttagaagatatgctcgccttcttatttcccgtcctta 496 ||| ||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 236 gctggagttggagtattattaatttagaagatatgctcaccttcttatttcccgtcctta 295 Query: 497 gtttaggaaagtggaaagttttttccttttattttaggaattttgggaacggaacatt 554 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 296 gtttaggaaagtggaaagttttttccttttattttaggaattttgggaacagaacatt 353 Score = 133 bits (67), Expect = 7e-28 Identities = 67/67 (100%) Strand = Plus / Plus Query: 202 aagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaacccttttg 261 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 aagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaacccttttg 60 Query: 262 tttaatc 268 ||||||| Sbjct: 61 tttaatc 67 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 282 ttctttcgatttcgattagatac 304 ||||||||||||||||||||||| Sbjct: 79 ttctttcgatttcgattagatac 101
>dbj|D13098.1|RICMT02 Oryza sativa (japonica cultivar-group) mitochondrial atpH pseudogene, clone:pMTVSCT3 Length = 1584 Score = 389 bits (196), Expect = e-105 Identities = 215/220 (97%), Gaps = 1/220 (0%) Strand = Plus / Plus Query: 51 attgctgctggattggccgtagggcttgcttctattggacctggagttggtcaaggtact 110 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct: 668 attgctgctggattggccgtagg-cttgcttctattgggcctggagttggtcaaggtact 726 Query: 111 gctgcaggacaagctgtagaaggtattgcgagacagccagaagcagaaggtaaaatacga 170 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 727 gctgcaggacaagctgtagaaggtattgcgagacagccagaagctgaaggtaaaatacga 786 Query: 171 ggtactttattgcttagtctagcttttatggaagctttaacaatttatggactagttgtg 230 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 787 ggtactttattgcttagtctagcttttatggaagctttaacaatttatggactagttgtg 846 Query: 231 gcactagcgcttttatttgcgaacccttttgtttaatcct 270 |||||||||||||||||||| |||||||||||| |||||| Sbjct: 847 gcactagcgcttttatttgcaaacccttttgttaaatcct 886 Score = 204 bits (103), Expect = 2e-49 Identities = 181/207 (87%), Gaps = 10/207 (4%) Strand = Plus / Plus Query: 319 agtaaattggtatttgcttccgcaattccaattatatcaatactttatttaatttactcc 378 |||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct: 933 agtaaattggtatttgcttctgcaattccaattatatcaatactt---------tactcc 983 Query: 379 tatttattactcttggaattatctatttatcgggacagataataccgcattctaggaagg 438 |||||||||||| |||||||||||||||||||||||||| |||||| || | |||||| Sbjct: 984 tatttattactcctggaattatctatttatcgggacagacaataccccaccccaggaaga 1043 Query: 439 gctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttagt 498 ||||| ||||| || || |||||||| ||||||||||||||||| |||||||||||||| Sbjct: 1044 gctgatttgaggataatcaatttagaggatatgctcgccttcttccttcccgtccttagt 1103 Query: 499 ttaggaaagtggaaagt-tttttcctt 524 |||||| |||||||||| ||||||||| Sbjct: 1104 ttaggacagtggaaagtctttttcctt 1130
>gb|DQ069384.1| Yucca schidigera ATP synthase CF0 C chain (atpH) gene, partial cds; chloroplast Length = 243 Score = 371 bits (187), Expect = 2e-99 Identities = 217/227 (95%) Strand = Plus / Plus Query: 37 ctgctgcttctgttattgctgctggattggccgtagggcttgcttctattggacctggag 96 |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 17 ctgccgcttccgttattgctgctggattggccgtagggcttgcttctattggacctggag 76 Query: 97 ttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcag 156 |||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||| Sbjct: 77 ttggtcaaggtactgctgcaggccaagccgtagaaggtattgcgagacaaccagaagcag 136 Query: 157 aaggtaaaatacgaggtactttattgcttagtctagcttttatggaagctttaacaattt 216 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 137 aaggaaaaatacgaggtactttattgcttagtctagcttttatggaagctttaacaattt 196 Query: 217 atggactagttgtggcactagcgcttttatttgcgaacccttttgtt 263 ||||||| || |||||| ||||||||||||||||||| ||||||||| Sbjct: 197 atggactggtcgtggcattagcgcttttatttgcgaatccttttgtt 243
>emb|AJ400848.1|SOL400848 Spinacia oleracea complete chloroplast genome Length = 150725 Score = 361 bits (182), Expect = 2e-96 Identities = 234/250 (93%), Gaps = 1/250 (0%) Strand = Plus / Minus Query: 21 catgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagggcttgc 79 ||||||||| || |||||||| ||||| |||||||||||||||||||| ||||||||||| Sbjct: 12731 catgaatccactgattgctgccgcttccgttattgctgctggattggctgtagggcttgc 12672 Query: 80 ttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgc 139 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 12671 ttctattggacctggagttggtcaaggtactgctgcgggacaagctgtagaaggtattgc 12612 Query: 140 gagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttat 199 ||||||||| ||||||||||| |||||||||||||||||||| |||||| |||| ||||| Sbjct: 12611 gagacagcccgaagcagaaggaaaaatacgaggtactttattacttagtttagcgtttat 12552 Query: 200 ggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaacccttt 259 |||||||||||||||||||||| | ||||| ||| ||||||||||||||||||| ||||| Sbjct: 12551 ggaagctttaacaatttatggattggttgtagcattagcgcttttatttgcgaatccttt 12492 Query: 260 tgtttaatcc 269 |||||||||| Sbjct: 12491 tgtttaatcc 12482
>gb|DQ069383.1| Typha latifolia ATP synthase CF0 C chain (atpH) gene, partial cds; chloroplast Length = 243 Score = 355 bits (179), Expect = 1e-94 Identities = 215/227 (94%) Strand = Plus / Plus Query: 37 ctgctgcttctgttattgctgctggattggccgtagggcttgcttctattggacctggag 96 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 17 ctgccgcttctgttattgctgctggattggctgtagggcttgcttctattggacctggag 76 Query: 97 ttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcag 156 |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct: 77 ttggtcaaggtactgctgcaggccaagctgtagaaggtattgcgagacaaccagaagcag 136 Query: 157 aaggtaaaatacgaggtactttattgcttagtctagcttttatggaagctttaacaattt 216 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 137 agggtaaaatacgaggtactttattgctgagtctagcttttatggaagctttaacaattt 196 Query: 217 atggactagttgtggcactagcgcttttatttgcgaacccttttgtt 263 | ||||| || |||||| |||| |||||||||||||| ||||||||| Sbjct: 197 acggactggtcgtggcattagcacttttatttgcgaatccttttgtt 243
>emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061C08, complete sequence Length = 145980 Score = 351 bits (177), Expect = 2e-93 Identities = 186/189 (98%) Strand = Plus / Plus Query: 82 ctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgcga 141 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 37385 ctattgggcctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgcga 37444 Query: 142 gacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttatgg 201 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 37445 gacagccagaagcagaaggtaaaatacgcggtactttattgcttagtctagcttttatgg 37504 Query: 202 aagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaacccttttg 261 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 37505 aagctttaacaatttatggactagttgtggcactggcgcttttatttgcgaacccttttg 37564 Query: 262 tttaatcct 270 ||||||||| Sbjct: 37565 tttaatcct 37573 Score = 163 bits (82), Expect = 8e-37 Identities = 194/230 (84%), Gaps = 11/230 (4%) Strand = Plus / Plus Query: 319 agtaaattggtatttgcttccgcaattccaattatatcaatactttatttaatttactcc 378 |||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct: 37620 agtaaattggtatttgcttctgcaattccaattatatcaatactt---------tactcc 37670 Query: 379 ta-tttattactcttggaattatctatttatcgggacagataataccgcattctaggaag 437 || |||||||||| | || || ||||||||| |||||||| |||||| || | ||||| Sbjct: 37671 taatttattactcctagagttttctatttatggggacagacaataccccaccccaggaat 37730 Query: 438 ggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttag 497 ||||| ||||| ||||| |||||||| |||||| ||||| |||| |||||| |||| | Sbjct: 37731 agctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttg 37790 Query: 498 tttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 546 |||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 37791 tttagggcagtggaaagtatttttccttttattttaggaattttgggaac 37840
>emb|AL731605.3|OSJN00246 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042F21, complete sequence Length = 167113 Score = 351 bits (177), Expect = 2e-93 Identities = 186/189 (98%) Strand = Plus / Plus Query: 82 ctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgcga 141 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 164193 ctattgggcctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgcga 164252 Query: 142 gacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttatgg 201 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 164253 gacagccagaagcagaaggtaaaatacgcggtactttattgcttagtctagcttttatgg 164312 Query: 202 aagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaacccttttg 261 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 164313 aagctttaacaatttatggactagttgtggcactggcgcttttatttgcgaacccttttg 164372 Query: 262 tttaatcct 270 ||||||||| Sbjct: 164373 tttaatcct 164381 Score = 163 bits (82), Expect = 8e-37 Identities = 194/230 (84%), Gaps = 11/230 (4%) Strand = Plus / Plus Query: 319 agtaaattggtatttgcttccgcaattccaattatatcaatactttatttaatttactcc 378 |||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct: 164428 agtaaattggtatttgcttctgcaattccaattatatcaatactt---------tactcc 164478 Query: 379 ta-tttattactcttggaattatctatttatcgggacagataataccgcattctaggaag 437 || |||||||||| | || || ||||||||| |||||||| |||||| || | ||||| Sbjct: 164479 taatttattactcctagagttttctatttatggggacagacaataccccaccccaggaat 164538 Query: 438 ggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttag 497 ||||| ||||| ||||| |||||||| |||||| ||||| |||| |||||| |||| | Sbjct: 164539 agctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttg 164598 Query: 498 tttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 546 |||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 164599 tttagggcagtggaaagtatttttccttttattttaggaattttgggaac 164648
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 351 bits (177), Expect = 2e-93 Identities = 186/189 (98%) Strand = Plus / Plus Query: 82 ctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgcga 141 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9079459 ctattgggcctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgcga 9079518 Query: 142 gacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttatgg 201 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 9079519 gacagccagaagcagaaggtaaaatacgcggtactttattgcttagtctagcttttatgg 9079578 Query: 202 aagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaacccttttg 261 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 9079579 aagctttaacaatttatggactagttgtggcactggcgcttttatttgcgaacccttttg 9079638 Query: 262 tttaatcct 270 ||||||||| Sbjct: 9079639 tttaatcct 9079647 Score = 250 bits (126), Expect = 4e-63 Identities = 132/134 (98%) Strand = Plus / Minus Query: 51 attgctgctggattggccgtagggcttgcttctattggacctggagttggtcaaggtact 110 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 32906720 attgctgctggattggccgtagggcttgcttctattgggcctggagttggtcaaggtact 32906661 Query: 111 gctgcaggacaagctgtagaaggtattgcgagacagccagaagcagaaggtaaaatacga 170 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 32906660 gctgcaggacaagctgtagaaggtattgcgagacagccagaagctgaaggtaaaatacga 32906601 Query: 171 ggtactttattgct 184 |||||||||||||| Sbjct: 32906600 ggtactttattgct 32906587 Score = 163 bits (82), Expect = 8e-37 Identities = 194/230 (84%), Gaps = 11/230 (4%) Strand = Plus / Plus Query: 319 agtaaattggtatttgcttccgcaattccaattatatcaatactttatttaatttactcc 378 |||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct: 9079694 agtaaattggtatttgcttctgcaattccaattatatcaatactt---------tactcc 9079744 Query: 379 ta-tttattactcttggaattatctatttatcgggacagataataccgcattctaggaag 437 || |||||||||| | || || ||||||||| |||||||| |||||| || | ||||| Sbjct: 9079745 taatttattactcctagagttttctatttatggggacagacaataccccaccccaggaat 9079804 Query: 438 ggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttag 497 ||||| ||||| ||||| |||||||| |||||| ||||| |||| |||||| |||| | Sbjct: 9079805 agctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttg 9079864 Query: 498 tttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 546 |||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 9079865 tttagggcagtggaaagtatttttccttttattttaggaattttgggaac 9079914
>emb|X03775.1|CHSOATP1 Spinach plastid genes atpI-H-F for ATP synthase CF(O) subunits IV, III and I Length = 4066 Score = 337 bits (170), Expect = 2e-89 Identities = 231/250 (92%), Gaps = 1/250 (0%) Strand = Plus / Plus Query: 21 catgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagggcttgc 79 ||||||||| || |||||||| || || |||||||||||||||||||| |||||| | || Sbjct: 1792 catgaatccactgattgctgccgcatccgttattgctgctggattggctgtagggttggc 1851 Query: 80 ttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgc 139 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 1852 ttctattggacctggagttggtcaaggtactgctgcgggacaagctgtagaaggtattgc 1911 Query: 140 gagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttat 199 ||||||||| ||||||||||| |||||||||||||||||||| |||||| |||| ||||| Sbjct: 1912 gagacagcccgaagcagaaggaaaaatacgaggtactttattacttagtttagcgtttat 1971 Query: 200 ggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaacccttt 259 |||||||||||||||||||||| | ||||| ||| ||||||||||||||||||| ||||| Sbjct: 1972 ggaagctttaacaatttatggattggttgtagcattagcgcttttatttgcgaatccttt 2031 Query: 260 tgtttaatcc 269 |||||||||| Sbjct: 2032 tgtttaatcc 2041
>gb|AY916449.1| Phalaenopsis aphrodite subsp. formosana plastid, complete genome Length = 148964 Score = 337 bits (170), Expect = 2e-89 Identities = 231/250 (92%), Gaps = 1/250 (0%) Strand = Plus / Minus Query: 19 accatgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagggctt 77 ||||||||||| || ||| |||||||||| |||||||||||||||||||| ||||||||| Sbjct: 14464 accatgaatccacttatttctgctgcttccgttattgctgctggattggctgtagggctt 14405 Query: 78 gcttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtatt 137 |||||||| |||||||| |||||||||||||||||||| || ||||| |||||||||||| Sbjct: 14404 gcttctatcggacctggggttggtcaaggtactgctgcgggccaagccgtagaaggtatt 14345 Query: 138 gcgagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagctttt 197 |||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct: 14344 gcgagacaaccagaagcagagggtaaaatacgaggtactttattgcttagtctggctttt 14285 Query: 198 atggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaaccct 257 |||||||||||||||||||||||||| || |||||| |||| ||||||||||| || ||| Sbjct: 14284 atggaagctttaacaatttatggactggtcgtggcattagctcttttatttgcaaatcct 14225 Query: 258 tttgtttaat 267 |||||||||| Sbjct: 14224 tttgtttaat 14215
>emb|AJ879453.1| Acorus calamus chloroplast, complete genome Length = 153821 Score = 335 bits (169), Expect = 9e-89 Identities = 233/253 (92%), Gaps = 1/253 (0%) Strand = Plus / Minus Query: 19 accatgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagggctt 77 ||||||||||| || ||| |||| ||||| ||||||||||||||||| |||||||| ||| Sbjct: 13872 accatgaatccactgatttctgccgcttccgttattgctgctggattagccgtaggactt 13813 Query: 78 gcttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtatt 137 ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||| Sbjct: 13812 gcttctattggacctggggttggtcaaggtactgctgcaggccaagccgtagaaggtatt 13753 Query: 138 gcgagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagctttt 197 |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 13752 gcgagacaaccagaagcagaaggtaaaatacgaggtactttattgcttagtctggctttt 13693 Query: 198 atggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaaccct 257 |||||||||||||||||||| ||||| || || ||| |||| |||||||||||||| ||| Sbjct: 13692 atggaagctttaacaatttacggactggtcgtagcattagcacttttatttgcgaatcct 13633 Query: 258 tttgtttaatcct 270 ||||| ||||||| Sbjct: 13632 tttgtctaatcct 13620
>emb|AJ428413.1|CFE428413 Calycanthus fertilis var. ferax complete chloroplast genome Length = 153337 Score = 329 bits (166), Expect = 6e-87 Identities = 217/234 (92%) Strand = Plus / Minus Query: 37 ctgctgcttctgttattgctgctggattggccgtagggcttgcttctattggacctggag 96 |||| ||||| |||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct: 14119 ctgccgcttccgttattgctgctggattggctgtagggcttgcttctattgggcctggag 14060 Query: 97 ttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcag 156 |||||||||||||||||||||| ||||| ||||||||||| || ||||| |||||||||| Sbjct: 14059 ttggtcaaggtactgctgcaggccaagccgtagaaggtatcgcaagacaaccagaagcag 14000 Query: 157 aaggtaaaatacgaggtactttattgcttagtctagcttttatggaagctttaacaattt 216 | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 13999 agggtaaaatacgaggtactttattgctcagtctggcttttatggaagctttaacaattt 13940 Query: 217 atggactagttgtggcactagcgcttttatttgcgaacccttttgtttaatcct 270 | ||||| || |||||| ||||||||||||||||||| |||||||||||||||| Sbjct: 13939 acggactggtcgtggcattagcgcttttatttgcgaatccttttgtttaatcct 13886
>gb|AY582139.1| Panax ginseng chloroplast, complete genome Length = 156318 Score = 327 bits (165), Expect = 2e-86 Identities = 229/249 (91%), Gaps = 1/249 (0%) Strand = Plus / Minus Query: 21 catgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagggcttgc 79 ||||||||| || ||| |||| ||||| |||||||||||||||||||| ||||||||||| Sbjct: 14839 catgaatccactgatttctgccgcttccgttattgctgctggattggctgtagggcttgc 14780 Query: 80 ttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgc 139 |||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || Sbjct: 14779 ttctattggacctggagttggtcaaggtactgctgcgggccaagctgtagaaggtatcgc 14720 Query: 140 gagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttat 199 ||||||||| || || || || |||||||||||||||||||||||||||||||||||||| Sbjct: 14719 gagacagcccgaggcggagggaaaaatacgaggtactttattgcttagtctagcttttat 14660 Query: 200 ggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaacccttt 259 ||||||||||||||||||||| || ||||| ||| |||| |||||||||||||| ||||| Sbjct: 14659 ggaagctttaacaatttatggcctggttgtagcattagcacttttatttgcgaatccttt 14600 Query: 260 tgtttaatc 268 ||||||||| Sbjct: 14599 tgtttaatc 14591
>gb|DQ069382.1| Ranunculus macranthus ATP synthase CF0 C chain (atpH) gene, partial cds; chloroplast Length = 243 Score = 323 bits (163), Expect = 3e-85 Identities = 211/227 (92%) Strand = Plus / Plus Query: 37 ctgctgcttctgttattgctgctggattggccgtagggcttgcttctattggacctggag 96 |||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct: 17 ctgccgcttccgttattgctgctggattggctgtagggctggcttctattggacctggag 76 Query: 97 ttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcag 156 ||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |||| Sbjct: 77 ttggtcaaggtactgctgcgggacaagccgtagaaggtattgcgagacaaccagaggcag 136 Query: 157 aaggtaaaatacgaggtactttattgcttagtctagcttttatggaagctttaacaattt 216 | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 137 agggtaaaatacgaggtactttattgcttagtctggcttttatggaagctttaacaattt 196 Query: 217 atggactagttgtggcactagcgcttttatttgcgaacccttttgtt 263 ||||||| || |||||| |||||||||||||||| || || |||||| Sbjct: 197 atggactggtcgtggcattagcgcttttatttgcaaatccctttgtt 243
>gb|DQ069379.1| Acorus americanus ATP synthase CF0 C chain (atpH) gene, partial cds; chloroplast Length = 243 Score = 321 bits (162), Expect = 1e-84 Identities = 210/226 (92%) Strand = Plus / Plus Query: 37 ctgctgcttctgttattgctgctggattggccgtagggcttgcttctattggacctggag 96 |||| ||||| ||||||||||||||||| |||||||| |||||||||||||||||||| | Sbjct: 17 ctgccgcttccgttattgctgctggattagccgtaggacttgcttctattggacctgggg 76 Query: 97 ttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcag 156 |||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||| Sbjct: 77 ttggtcaaggtactgctgcaggccaagccgtagaaggtattgcgagacaaccagaagcag 136 Query: 157 aaggtaaaatacgaggtactttattgcttagtctagcttttatggaagctttaacaattt 216 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 137 aaggtaaaatacgaggtactttattgcttagtctggcttttatggaagctttaacaattt 196 Query: 217 atggactagttgtggcactagcgcttttatttgcgaacccttttgt 262 | ||||| || || ||| |||| |||||||||||||| |||||||| Sbjct: 197 acggactggtcgtagcattagcacttttatttgcgaatccttttgt 242
>dbj|AB189069.1| Silene latifolia chloroplast DNA, partial sequence, rpoB gene to rps7 gene region Length = 47249 Score = 321 bits (162), Expect = 1e-84 Identities = 229/250 (91%), Gaps = 1/250 (0%) Strand = Plus / Plus Query: 21 catgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagggcttgc 79 ||||||||| || ||| |||| ||||| |||||||||||||||||||| ||||||||||| Sbjct: 13938 catgaatccactgatttctgccgcttccgttattgctgctggattggctgtagggcttgc 13997 Query: 80 ttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgc 139 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 13998 ttctattggacctggagttggtcaaggtactgctgcaggccaagctgtagaaggtattgc 14057 Query: 140 gagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttat 199 ||||||||| || ||||| || ||||| |||||||||||||| |||||| |||||||||| Sbjct: 14058 gagacagcctgaggcagagggaaaaatccgaggtactttattacttagtttagcttttat 14117 Query: 200 ggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaacccttt 259 |||||||||||||||||||||| | ||||| ||| |||| ||||||||||| || ||||| Sbjct: 14118 ggaagctttaacaatttatggattggttgtagcattagcccttttatttgcaaatccttt 14177 Query: 260 tgtttaatcc 269 |||||||||| Sbjct: 14178 tgtttaatcc 14187
>emb|AJ627251.1| Nymphaea alba chloroplast, complete genome Length = 159930 Score = 319 bits (161), Expect = 5e-84 Identities = 231/253 (91%), Gaps = 1/253 (0%) Strand = Plus / Minus Query: 19 accatgaatccc-taattgctgctgcttctgttattgctgctggattggccgtagggctt 77 |||||||||||| ||||| |||||||||| |||||||||||||||||||||||||| ||| Sbjct: 15312 accatgaatcccctaatttctgctgcttccgttattgctgctggattggccgtaggactt 15253 Query: 78 gcttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtatt 137 |||||||||||||| ||||| ||||||||||||||||| || ||||| |||||||||||| Sbjct: 15252 gcttctattggacccggagtcggtcaaggtactgctgcgggccaagccgtagaaggtatt 15193 Query: 138 gcgagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagctttt 197 || ||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct: 15192 gctagacaaccagaagcagagggtaaaatacgaggtactttattgcttagtctggctttt 15133 Query: 198 atggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaaccct 257 |||||||||||||||||||| ||||| || |||||| |||| ||||||||||| || || Sbjct: 15132 atggaagctttaacaatttacggactggtcgtggcattagcacttttatttgctaatccc 15073 Query: 258 tttgtttaatcct 270 ||||| ||||||| Sbjct: 15072 tttgtgtaatcct 15060
>emb|AJ506156.2|ATR506156 Amborella trichopoda chloroplast genomic DNA, complete sequence Length = 162686 Score = 319 bits (161), Expect = 5e-84 Identities = 231/253 (91%), Gaps = 1/253 (0%) Strand = Plus / Minus Query: 19 accatgaatccc-taattgctgctgcttctgttattgctgctggattggccgtagggctt 77 |||||||||||| | ||| |||||||||| |||||||||||||||||||||||||| ||| Sbjct: 16944 accatgaatcccctgatttctgctgcttccgttattgctgctggattggccgtaggactt 16885 Query: 78 gcttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtatt 137 |||||||||||||| ||||| ||||||||||||||||| || ||||| ||||| ||||| Sbjct: 16884 gcttctattggacccggagtcggtcaaggtactgctgcgggtcaagccgtagagggtatc 16825 Query: 138 gcgagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagctttt 197 |||||||| ||||||||||| ||||||||||||||||||||||||||||| || |||||| Sbjct: 16824 gcgagacaaccagaagcagagggtaaaatacgaggtactttattgcttagcctggctttt 16765 Query: 198 atggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaaccct 257 |||||||||||||||||||| ||||| || |||||| ||||||||||||||||||| || Sbjct: 16764 atggaagctttaacaatttacggactggtcgtggcattagcgcttttatttgcgaatccc 16705 Query: 258 tttgtttaatcct 270 ||||||||||||| Sbjct: 16704 tttgtttaatcct 16692
>gb|DQ347958.1| Solanum bulbocastanum cultivar PT29 chloroplast, complete genome Length = 155371 Score = 319 bits (161), Expect = 5e-84 Identities = 228/249 (91%), Gaps = 1/249 (0%) Strand = Plus / Minus Query: 21 catgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagggcttgc 79 ||||||||| || |||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct: 13709 catgaatccactgattgctgccgcttccgttattgctgctggattggccgtagggcttgc 13650 Query: 80 ttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgc 139 ||||||||||||||||||||||||||| |||||||| || ||||||||||| ||||| || Sbjct: 13649 ttctattggacctggagttggtcaagggactgctgcgggtcaagctgtagagggtatcgc 13590 Query: 140 gagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttat 199 ||||||||| || ||||| || |||||||||||||| |||||||||||||||||||||| Sbjct: 13589 gagacagcctgaggcagagggaaaaatacgaggtacgctattgcttagtctagcttttat 13530 Query: 200 ggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaacccttt 259 |||||||||||||||||||||||| ||||| ||| |||| ||||||||||| || ||||| Sbjct: 13529 ggaagctttaacaatttatggactggttgtagcattagcacttttatttgcaaatccttt 13470 Query: 260 tgtttaatc 268 ||||||||| Sbjct: 13469 tgtttaatc 13461
>gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, complete genome Length = 152772 Score = 317 bits (160), Expect = 2e-83 Identities = 227/248 (91%), Gaps = 1/248 (0%) Strand = Plus / Plus Query: 21 catgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagggcttgc 79 ||||||||| || ||| |||| ||||| |||||||||||||||||||| ||||||||||| Sbjct: 26325 catgaatccactgatttctgccgcttccgttattgctgctggattggctgtagggcttgc 26384 Query: 80 ttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgc 139 |||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || Sbjct: 26385 ttctattggacctggagttggtcaaggtactgctgcgggtcaagctgtagaaggtatcgc 26444 Query: 140 gagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttat 199 ||||||||| || || || || |||||||||||||||||||||||||||||||||||||| Sbjct: 26445 gagacagcccgaggcggagggaaaaatacgaggtactttattgcttagtctagcttttat 26504 Query: 200 ggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaacccttt 259 |||||||||||| |||||||| || ||||| ||| |||| |||||||||||||| ||||| Sbjct: 26505 ggaagctttaaccatttatggcctggttgtagcattagcacttttatttgcgaatccttt 26564 Query: 260 tgtttaat 267 |||||||| Sbjct: 26565 tgtttaat 26572
>gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast, complete genome Length = 151104 Score = 317 bits (160), Expect = 2e-83 Identities = 227/248 (91%), Gaps = 1/248 (0%) Strand = Plus / Plus Query: 21 catgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagggcttgc 79 ||||||||| || ||| |||| ||||| |||||||||||||||||||| ||||||||||| Sbjct: 26441 catgaatccactgatttctgccgcttccgttattgctgctggattggctgtagggcttgc 26500 Query: 80 ttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgc 139 |||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || Sbjct: 26501 ttctattggacctggagttggtcaaggtactgctgcgggccaagctgtagaaggtatcgc 26560 Query: 140 gagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttat 199 ||||||||| || || || || |||||||||||||||||||||||||||||||||||||| Sbjct: 26561 gagacagcccgaggcggagggaaaaatacgaggtactttattgcttagtctagcttttat 26620 Query: 200 ggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaacccttt 259 ||||||||||||||||||||| || ||||| ||| |||| ||||||||||| || ||||| Sbjct: 26621 ggaagctttaacaatttatggcctggttgtagcattagcacttttatttgctaatccttt 26680 Query: 260 tgtttaat 267 |||||||| Sbjct: 26681 tgtttaat 26688
>gb|AY865171.1| Lactuca sativa chloroplast inversion region Length = 28722 Score = 317 bits (160), Expect = 2e-83 Identities = 227/248 (91%), Gaps = 1/248 (0%) Strand = Plus / Plus Query: 21 catgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagggcttgc 79 ||||||||| || ||| |||| ||||| |||||||||||||||||||| ||||||||||| Sbjct: 20263 catgaatccactgatttctgccgcttccgttattgctgctggattggctgtagggcttgc 20322 Query: 80 ttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgc 139 |||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || Sbjct: 20323 ttctattggacctggagttggtcaaggtactgctgcgggtcaagctgtagaaggtatcgc 20382 Query: 140 gagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttat 199 ||||||||| || || || || |||||||||||||||||||||||||||||||||||||| Sbjct: 20383 gagacagcccgaggcggagggaaaaatacgaggtactttattgcttagtctagcttttat 20442 Query: 200 ggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaacccttt 259 |||||||||||| |||||||| || ||||| ||| |||| |||||||||||||| ||||| Sbjct: 20443 ggaagctttaaccatttatggcctggttgtagcattagcacttttatttgcgaatccttt 20502 Query: 260 tgtttaat 267 |||||||| Sbjct: 20503 tgtttaat 20510
>gb|DQ424856.1| Vitis vinifera cultivar Maxxa chloroplast, complete genome Length = 160928 Score = 317 bits (160), Expect = 2e-83 Identities = 227/248 (91%), Gaps = 1/248 (0%) Strand = Plus / Minus Query: 21 catgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagggcttgc 79 ||||||||| || ||| |||| ||||| |||||||||||||||||||||||||||||||| Sbjct: 15378 catgaatccactgatttctgccgcttccgttattgctgctggattggccgtagggcttgc 15319 Query: 80 ttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgc 139 ||||||||||||||| |||||||||||||||||||| || ||||||||||||||||| || Sbjct: 15318 ttctattggacctggcgttggtcaaggtactgctgcgggccaagctgtagaaggtatcgc 15259 Query: 140 gagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttat 199 |||||||| || || || || ||||||||||||||||||||||||||||| |||||||| Sbjct: 15258 aagacagcccgaggcggagggaaaaatacgaggtactttattgcttagtctggcttttat 15199 Query: 200 ggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaacccttt 259 |||||||||||||||||||||||| ||||| ||| |||| |||||||||||||| ||||| Sbjct: 15198 ggaagctttaacaatttatggactggttgtagcattagcacttttatttgcgaatccttt 15139 Query: 260 tgtttaat 267 |||||||| Sbjct: 15138 tgtttaat 15131
>dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome Length = 152765 Score = 317 bits (160), Expect = 2e-83 Identities = 227/248 (91%), Gaps = 1/248 (0%) Strand = Plus / Plus Query: 21 catgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagggcttgc 79 ||||||||| || ||| |||| ||||| |||||||||||||||||||| ||||||||||| Sbjct: 26325 catgaatccactgatttctgccgcttccgttattgctgctggattggctgtagggcttgc 26384 Query: 80 ttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgc 139 |||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || Sbjct: 26385 ttctattggacctggagttggtcaaggtactgctgcgggtcaagctgtagaaggtatcgc 26444 Query: 140 gagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttat 199 ||||||||| || || || || |||||||||||||||||||||||||||||||||||||| Sbjct: 26445 gagacagcccgaggcggagggaaaaatacgaggtactttattgcttagtctagcttttat 26504 Query: 200 ggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaacccttt 259 |||||||||||| |||||||| || ||||| ||| |||| |||||||||||||| ||||| Sbjct: 26505 ggaagctttaaccatttatggcctggttgtagcattagcacttttatttgcgaatccttt 26564 Query: 260 tgtttaat 267 |||||||| Sbjct: 26565 tgtttaat 26572
>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0075K12, complete sequence Length = 125936 Score = 315 bits (159), Expect = 8e-83 Identities = 165/167 (98%) Strand = Plus / Plus Query: 104 aggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcagaaggtaa 163 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 30371 aggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcagaaggtaa 30430 Query: 164 aatacgaggtactttattgcttagtctagcttttatggaagctttaacaatttatggact 223 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 30431 aatacgcggtactttattgcttagtctagcttttatggaagctttaacaatttatggact 30490 Query: 224 agttgtggcactagcgcttttatttgcgaacccttttgtttaatcct 270 |||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 30491 agttgtggcactggcgcttttatttgcgaacccttttgtttaatcct 30537 Score = 224 bits (113), Expect = 2e-55 Identities = 132/137 (96%), Gaps = 1/137 (0%) Strand = Plus / Plus Query: 15 actcaccatgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagg 73 ||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 30236 actcatcatgaatccactaattgctgctgcttccgttattgctgctggattggccgtagg 30295 Query: 74 gcttgcttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaagg 133 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 30296 tcttgcttctattgggcctggagttggtcaaggtactgctgcaggacaagctgtagaagg 30355 Query: 134 tattgcgagacagccag 150 ||||||||||||||||| Sbjct: 30356 tattgcgagacagccag 30372 Score = 163 bits (82), Expect = 8e-37 Identities = 194/230 (84%), Gaps = 11/230 (4%) Strand = Plus / Plus Query: 319 agtaaattggtatttgcttccgcaattccaattatatcaatactttatttaatttactcc 378 |||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct: 30584 agtaaattggtatttgcttctgcaattccaattatatcaatactt---------tactcc 30634 Query: 379 ta-tttattactcttggaattatctatttatcgggacagataataccgcattctaggaag 437 || |||||||||| | || || ||||||||| |||||||| |||||| || | ||||| Sbjct: 30635 taatttattactcctagagttttctatttatggggacagacaataccccaccccaggaat 30694 Query: 438 ggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttag 497 ||||| ||||| ||||| |||||||| |||||| ||||| |||| |||||| |||| | Sbjct: 30695 agctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttg 30754 Query: 498 tttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 546 |||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 30755 tttagggcagtggaaagtatttttccttttattttaggaattttgggaac 30804
>gb|AC092750.2| Oryza sativa (japonica cultivar-group) cultivar Nipponbare from chromosome 10, complete sequence Length = 134933 Score = 315 bits (159), Expect = 8e-83 Identities = 165/167 (98%) Strand = Plus / Plus Query: 104 aggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcagaaggtaa 163 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 105304 aggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcagaaggtaa 105363 Query: 164 aatacgaggtactttattgcttagtctagcttttatggaagctttaacaatttatggact 223 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 105364 aatacgcggtactttattgcttagtctagcttttatggaagctttaacaatttatggact 105423 Query: 224 agttgtggcactagcgcttttatttgcgaacccttttgtttaatcct 270 |||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 105424 agttgtggcactggcgcttttatttgcgaacccttttgtttaatcct 105470 Score = 224 bits (113), Expect = 2e-55 Identities = 132/137 (96%), Gaps = 1/137 (0%) Strand = Plus / Plus Query: 15 actcaccatgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagg 73 ||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 105169 actcatcatgaatccactaattgctgctgcttccgttattgctgctggattggccgtagg 105228 Query: 74 gcttgcttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaagg 133 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 105229 tcttgcttctattgggcctggagttggtcaaggtactgctgcaggacaagctgtagaagg 105288 Query: 134 tattgcgagacagccag 150 ||||||||||||||||| Sbjct: 105289 tattgcgagacagccag 105305 Score = 163 bits (82), Expect = 8e-37 Identities = 194/230 (84%), Gaps = 11/230 (4%) Strand = Plus / Plus Query: 319 agtaaattggtatttgcttccgcaattccaattatatcaatactttatttaatttactcc 378 |||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct: 105517 agtaaattggtatttgcttctgcaattccaattatatcaatactt---------tactcc 105567 Query: 379 ta-tttattactcttggaattatctatttatcgggacagataataccgcattctaggaag 437 || |||||||||| | || || ||||||||| |||||||| |||||| || | ||||| Sbjct: 105568 taatttattactcctagagttttctatttatggggacagacaataccccaccccaggaat 105627 Query: 438 ggctgagttgagtatgattaatttagaagatatgctcgccttcttatttcccgtccttag 497 ||||| ||||| ||||| |||||||| |||||| ||||| |||| |||||| |||| | Sbjct: 105628 agctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttg 105687 Query: 498 tttaggaaagtggaaagt-tttttccttttattttaggaattttgggaac 546 |||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct: 105688 tttagggcagtggaaagtatttttccttttattttaggaattttgggaac 105737
>emb|Z00044.2|CHNTXX Nicotiana tabacum chloroplast genome DNA Length = 155943 Score = 311 bits (157), Expect = 1e-81 Identities = 227/249 (91%), Gaps = 1/249 (0%) Strand = Plus / Minus Query: 21 catgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagggcttgc 79 ||||||||| || ||| |||| ||||| |||||||||||||||||||||||||||||||| Sbjct: 14105 catgaatccactgatttctgccgcttccgttattgctgctggattggccgtagggcttgc 14046 Query: 80 ttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgc 139 |||||||||||| |||||||||||||| |||||||| || ||||||||||| ||||| || Sbjct: 14045 ttctattggacccggagttggtcaagggactgctgcgggtcaagctgtagagggtatcgc 13986 Query: 140 gagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttat 199 ||||||||| || ||||| || |||||||||||||| |||||||||||||||||||||| Sbjct: 13985 gagacagcctgaggcagagggaaaaatacgaggtacgctattgcttagtctagcttttat 13926 Query: 200 ggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaacccttt 259 |||||||||||||||||||||||| ||||| ||| |||| |||||||||||||| ||||| Sbjct: 13925 ggaagctttaacaatttatggactggttgtagcattagcacttttatttgcgaatccttt 13866 Query: 260 tgtttaatc 268 ||||||||| Sbjct: 13865 tgtttaatc 13857
>emb|AM087200.2| Lycopersicon esculentum complete chloroplast genome Length = 155460 Score = 311 bits (157), Expect = 1e-81 Identities = 227/249 (91%), Gaps = 1/249 (0%) Strand = Plus / Minus Query: 21 catgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagggcttgc 79 ||||||||| || ||| |||| ||||| |||||||||||||||||||||||||||||||| Sbjct: 13688 catgaatccactgatttctgccgcttccgttattgctgctggattggccgtagggcttgc 13629 Query: 80 ttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgc 139 ||||||||||||||||||||||||||| |||||||| || ||||||||||| ||||| || Sbjct: 13628 ttctattggacctggagttggtcaagggactgctgcgggtcaagctgtagagggtatcgc 13569 Query: 140 gagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttat 199 ||||||||| || ||||| || |||||||||||||| |||||||||||||||||||||| Sbjct: 13568 gagacagcctgaggcagagggcaaaatacgaggtacgctattgcttagtctagcttttat 13509 Query: 200 ggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaacccttt 259 |||||||||||||||||||||||| ||||| ||| |||| ||||||||||| || ||||| Sbjct: 13508 ggaagctttaacaatttatggactggttgtagcattagcacttttatttgcaaatccttt 13449 Query: 260 tgtttaatc 268 ||||||||| Sbjct: 13448 tgtttaatc 13440
>gb|DQ347959.1| Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome Length = 155461 Score = 311 bits (157), Expect = 1e-81 Identities = 227/249 (91%), Gaps = 1/249 (0%) Strand = Plus / Minus Query: 21 catgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagggcttgc 79 ||||||||| || ||| |||| ||||| |||||||||||||||||||||||||||||||| Sbjct: 13685 catgaatccactgatttctgccgcttccgttattgctgctggattggccgtagggcttgc 13626 Query: 80 ttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgc 139 ||||||||||||||||||||||||||| |||||||| || ||||||||||| ||||| || Sbjct: 13625 ttctattggacctggagttggtcaagggactgctgcgggtcaagctgtagagggtatcgc 13566 Query: 140 gagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttat 199 ||||||||| || ||||| || |||||||||||||| |||||||||||||||||||||| Sbjct: 13565 gagacagcctgaggcagagggcaaaatacgaggtacgctattgcttagtctagcttttat 13506 Query: 200 ggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaacccttt 259 |||||||||||||||||||||||| ||||| ||| |||| ||||||||||| || ||||| Sbjct: 13505 ggaagctttaacaatttatggactggttgtagcattagcacttttatttgcaaatccttt 13446 Query: 260 tgtttaatc 268 ||||||||| Sbjct: 13445 tgtttaatc 13437
>dbj|AB237912.1| Nicotiana sylvestris chloroplast DNA, complete sequence Length = 155941 Score = 311 bits (157), Expect = 1e-81 Identities = 227/249 (91%), Gaps = 1/249 (0%) Strand = Plus / Minus Query: 21 catgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagggcttgc 79 ||||||||| || ||| |||| ||||| |||||||||||||||||||||||||||||||| Sbjct: 14103 catgaatccactgatttctgccgcttccgttattgctgctggattggccgtagggcttgc 14044 Query: 80 ttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgc 139 |||||||||||| |||||||||||||| |||||||| || ||||||||||| ||||| || Sbjct: 14043 ttctattggacccggagttggtcaagggactgctgcgggtcaagctgtagagggtatcgc 13984 Query: 140 gagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttat 199 ||||||||| || ||||| || |||||||||||||| |||||||||||||||||||||| Sbjct: 13983 gagacagcctgaggcagagggaaaaatacgaggtacgctattgcttagtctagcttttat 13924 Query: 200 ggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaacccttt 259 |||||||||||||||||||||||| ||||| ||| |||| |||||||||||||| ||||| Sbjct: 13923 ggaagctttaacaatttatggactggttgtagcattagcacttttatttgcgaatccttt 13864 Query: 260 tgtttaatc 268 ||||||||| Sbjct: 13863 tgtttaatc 13855
>dbj|AB240139.1| Nicotiana tomentosiformis chloroplast DNA, complete sequence Length = 155745 Score = 311 bits (157), Expect = 1e-81 Identities = 227/249 (91%), Gaps = 1/249 (0%) Strand = Plus / Minus Query: 21 catgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagggcttgc 79 ||||||||| || ||| |||| ||||| |||||||||||||||||||||||||||||||| Sbjct: 14048 catgaatccactgatttctgccgcttccgttattgctgctggattggccgtagggcttgc 13989 Query: 80 ttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgc 139 ||||||||||||||| ||||||||||| |||||||| || ||||||||||| ||||| || Sbjct: 13988 ttctattggacctggggttggtcaagggactgctgcgggtcaagctgtagagggtatcgc 13929 Query: 140 gagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttat 199 ||||||||| || ||||| || |||||||||||||| |||||||||||||||||||||| Sbjct: 13928 gagacagcctgaggcagagggaaaaatacgaggtacgctattgcttagtctagcttttat 13869 Query: 200 ggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaacccttt 259 |||||||||||||||||||||||| ||||| ||| |||| |||||||||||||| ||||| Sbjct: 13868 ggaagctttaacaatttatggactggttgtagcattagcacttttatttgcgaatccttt 13809 Query: 260 tgtttaatc 268 ||||||||| Sbjct: 13808 tgtttaatc 13800
>emb|AJ316582.1|ABE316582 Atropa belladonna complete chloroplast genome, strain Ab5p(kan) Length = 156687 Score = 307 bits (155), Expect = 2e-80 Identities = 209/227 (92%) Strand = Plus / Minus Query: 42 gcttctgttattgctgctggattggccgtagggcttgcttctattggacctggagttggt 101 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13884 gcttccgttattgctgctggattggccgtagggcttgcttctattggacctggagttggt 13825 Query: 102 caaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcagaaggt 161 ||||| |||||||| || ||||||||||| ||||| ||||||||||| || ||||| || Sbjct: 13824 caagggactgctgcgggtcaagctgtagagggtatcgcgagacagcctgaggcagaggga 13765 Query: 162 aaaatacgaggtactttattgcttagtctagcttttatggaagctttaacaatttatgga 221 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13764 aaaatacgaggtacgctattgcttagtctagcttttatggaagctttaacaatttatgga 13705 Query: 222 ctagttgtggcactagcgcttttatttgcgaacccttttgtttaatc 268 || ||||| ||| |||| ||||||||||| || |||||||||||||| Sbjct: 13704 ctggttgtagcattagcacttttatttgcaaatccttttgtttaatc 13658
>gb|DQ231548.1| Brassica rapa subsp. pekinensis chloroplast sequence Length = 153482 Score = 305 bits (154), Expect = 8e-80 Identities = 214/234 (91%) Strand = Plus / Minus Query: 37 ctgctgcttctgttattgctgctggattggccgtagggcttgcttctattggacctggag 96 |||||||||| |||||||||||||| ||||| || ||||||||||||||||||||||| | Sbjct: 13182 ctgctgcttcggttattgctgctgggttggctgttgggcttgcttctattggacctgggg 13123 Query: 97 ttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcag 156 ||||||||||||| ||||| || |||||||| |||||||| |||||||| || || |||| Sbjct: 13122 ttggtcaaggtacagctgcgggtcaagctgtcgaaggtatcgcgagacaacctgaggcag 13063 Query: 157 aaggtaaaatacgaggtactttattgcttagtctagcttttatggaagctttaacaattt 216 |||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||| Sbjct: 13062 aaggaaaaatacgaggtactttattgcttagtttggcttttatggaagctttaacaattt 13003 Query: 217 atggactagttgtggcactagcgcttttatttgcgaacccttttgtttaatcct 270 |||| |||||||| ||| ||||||||||||||||||| |||||||||||||||| Sbjct: 13002 atggcctagttgtagcattagcgcttttatttgcgaatccttttgtttaatcct 12949
>gb|DQ317523.1| Glycine max cultivar PI 437654 chloroplast, complete genome Length = 152218 Score = 305 bits (154), Expect = 8e-80 Identities = 214/234 (91%) Strand = Plus / Plus Query: 37 ctgctgcttctgttattgctgctggattggccgtagggcttgcttctattggacctggag 96 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct: 47834 ctgctgcttctgttattgctgctgggttggccgtagggcttgcttctattggacctgggg 47893 Query: 97 ttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcag 156 |||||||||| ||||||||||| |||||||||||||| ||||| |||| || || |||| Sbjct: 47894 ttggtcaaggcactgctgcagggcaagctgtagaagggattgcacgacaaccggaggcag 47953 Query: 157 aaggtaaaatacgaggtactttattgcttagtctagcttttatggaagctttaacaattt 216 | || ||||||||||||||||||||||||||| | ||||||||||||||||||||||||| Sbjct: 47954 agggaaaaatacgaggtactttattgcttagtttggcttttatggaagctttaacaattt 48013 Query: 217 atggactagttgtggcactagcgcttttatttgcgaacccttttgtttaatcct 270 ||||||| ||||| ||| |||| ||||||||||| || |||||||||||||||| Sbjct: 48014 atggactggttgtagcattagcacttttatttgctaatccttttgtttaatcct 48067
>gb|M18442.1|SOYCFOATP G.max (soybean) atpH gene encoding CFO-ATPase subunit III, chloroplast gene encoding chloroplast protein, complete cds Length = 440 Score = 305 bits (154), Expect = 8e-80 Identities = 214/234 (91%) Strand = Plus / Plus Query: 37 ctgctgcttctgttattgctgctggattggccgtagggcttgcttctattggacctggag 96 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct: 142 ctgctgcttctgttattgctgctgggttggccgtagggcttgcttctattggacctgggg 201 Query: 97 ttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcag 156 |||||||||| ||||||||||| |||||||||||||| ||||| |||| || || |||| Sbjct: 202 ttggtcaaggcactgctgcagggcaagctgtagaagggattgcacgacaaccggaggcag 261 Query: 157 aaggtaaaatacgaggtactttattgcttagtctagcttttatggaagctttaacaattt 216 | || ||||||||||||||||||||||||||| | ||||||||||||||||||||||||| Sbjct: 262 agggaaaaatacgaggtactttattgcttagtttggcttttatggaagctttaacaattt 321 Query: 217 atggactagttgtggcactagcgcttttatttgcgaacccttttgtttaatcct 270 ||||||| ||||| ||| |||| ||||||||||| || |||||||||||||||| Sbjct: 322 atggactggttgtagcattagcacttttatttgctaatccttttgtttaatcct 375
>gb|AY228468.1| Pinus Koraiensis chloroplast, complete genome Length = 116866 Score = 303 bits (153), Expect = 3e-79 Identities = 229/253 (90%), Gaps = 1/253 (0%) Strand = Plus / Minus Query: 19 accatgaatccct-aattgctgctgcttctgttattgctgctggattggccgtagggctt 77 |||||| |||||| |||| |||||||||||||||||||||||||||| | ||||||||| Sbjct: 13330 accatggatcccttaatttctgctgcttctgttattgctgctggattatctgtagggctt 13271 Query: 78 gcttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtatt 137 ||||| ||||| ||||| ||||| || || |||||||| || || ||||||||||||||| Sbjct: 13270 gcttccattggccctggcgttggccagggcactgctgcgggccaggctgtagaaggtatt 13211 Query: 138 gcgagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagctttt 197 |||||||| ||||||||||||||||||||||||||||| ||| |||| ||| |||||||| Sbjct: 13210 gcgagacaaccagaagcagaaggtaaaatacgaggtaccttactgctaagtttagctttt 13151 Query: 198 atggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaaccct 257 ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| || Sbjct: 13150 atggaagctttaacaatttatggactagttgtggccctagcgcttctatttgcgaatccc 13091 Query: 258 tttgtttaatcct 270 ||||||||||||| Sbjct: 13090 tttgtttaatcct 13078
>gb|M10124.1|TOBCPATPB Tobacco chloroplast ATPase subunits I and III gene, complete cds, and ATPase subunit alpha, 5' end Length = 2550 Score = 303 bits (153), Expect = 3e-79 Identities = 226/249 (90%), Gaps = 1/249 (0%) Strand = Plus / Plus Query: 21 catgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagggcttgc 79 ||||||||| || ||| |||| ||||| |||||||| ||||||||||||||||||||||| Sbjct: 499 catgaatccactgatttctgccgcttccgttattgcggctggattggccgtagggcttgc 558 Query: 80 ttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgc 139 |||||||||||| |||||||||||||| |||||||| || ||||||||||| ||||| || Sbjct: 559 ttctattggacccggagttggtcaagggactgctgcgggtcaagctgtagagggtatcgc 618 Query: 140 gagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttat 199 ||||||||| || ||||| || |||||||||||||| |||||||||||||||||||||| Sbjct: 619 gagacagcctgaggcagagggaaaaatacgaggtacgctattgcttagtctagcttttat 678 Query: 200 ggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaacccttt 259 |||||||||||||||||||||||| ||||| ||| |||| |||||||||||||| ||||| Sbjct: 679 ggaagctttaacaatttatggactggttgtagcattagcacttttatttgcgaatccttt 738 Query: 260 tgtttaatc 268 ||||||||| Sbjct: 739 tgtttaatc 747
>dbj|D17510.1|PINCPTRPG Pinus thunbergii chloroplast DNA, complete sequence Length = 119707 Score = 303 bits (153), Expect = 3e-79 Identities = 229/253 (90%), Gaps = 1/253 (0%) Strand = Plus / Minus Query: 19 accatgaatccct-aattgctgctgcttctgttattgctgctggattggccgtagggctt 77 |||||| |||||| |||| |||||||||| ||||||||||||||||| | ||||||||| Sbjct: 13537 accatggatcccttaatttctgctgcttccgttattgctgctggattatctgtagggctt 13478 Query: 78 gcttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtatt 137 ||||| ||||||||||| ||||| || || |||||||| || |||||||||||||||||| Sbjct: 13477 gcttccattggacctggcgttggccagggcactgctgcgggccaagctgtagaaggtatt 13418 Query: 138 gcgagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagctttt 197 |||||||| ||||||||||||||||||||||||||||| ||| |||| ||| |||||||| Sbjct: 13417 gcgagacaaccagaagcagaaggtaaaatacgaggtaccttactgctaagtttagctttt 13358 Query: 198 atggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaaccct 257 |||||||||||||| |||||||||||||||||||| ||||||||| |||||||||| || Sbjct: 13357 atggaagctttaactatttatggactagttgtggccctagcgcttctatttgcgaatccc 13298 Query: 258 tttgtttaatcct 270 ||||||||||||| Sbjct: 13297 tttgtttaatcct 13285
>gb|DQ386163.1| Solanum tuberosum cultivar Desiree chloroplast, complete genome Length = 155298 Score = 299 bits (151), Expect = 5e-78 Identities = 208/227 (91%) Strand = Plus / Minus Query: 42 gcttctgttattgctgctggattggccgtagggcttgcttctattggacctggagttggt 101 ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 13806 gcttccgttattgctgctggattggccgtagggcttgcttctattggacctggaattggt 13747 Query: 102 caaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcagaaggt 161 ||||| |||||||| || ||||||||||| ||||| ||||||||||| || ||||| || Sbjct: 13746 caagggactgctgcgggtcaagctgtagagggtatcgcgagacagcctgaggcagaggga 13687 Query: 162 aaaatacgaggtactttattgcttagtctagcttttatggaagctttaacaatttatgga 221 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13686 aaaatacgaggtacgctattgcttagtctagcttttatggaagctttaacaatttatgga 13627 Query: 222 ctagttgtggcactagcgcttttatttgcgaacccttttgtttaatc 268 || ||||| ||| |||| ||||||||||| || |||||||||||||| Sbjct: 13626 ctggttgtagcattagcacttttatttgcaaatccttttgtttaatc 13580
>gb|DQ231562.1| Solanum tuberosum chloroplast, complete genome Length = 155312 Score = 299 bits (151), Expect = 5e-78 Identities = 208/227 (91%) Strand = Plus / Minus Query: 42 gcttctgttattgctgctggattggccgtagggcttgcttctattggacctggagttggt 101 ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 13806 gcttccgttattgctgctggattggccgtagggcttgcttctattggacctggaattggt 13747 Query: 102 caaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcagaaggt 161 ||||| |||||||| || ||||||||||| ||||| ||||||||||| || ||||| || Sbjct: 13746 caagggactgctgcgggtcaagctgtagagggtatcgcgagacagcctgaggcagaggga 13687 Query: 162 aaaatacgaggtactttattgcttagtctagcttttatggaagctttaacaatttatgga 221 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13686 aaaatacgaggtacgctattgcttagtctagcttttatggaagctttaacaatttatgga 13627 Query: 222 ctagttgtggcactagcgcttttatttgcgaacccttttgtttaatc 268 || ||||| ||| |||| ||||||||||| || |||||||||||||| Sbjct: 13626 ctggttgtagcattagcacttttatttgcaaatccttttgtttaatc 13580
>gb|DQ069381.1| Nuphar advena ATP synthase CF0 C chain (atpH) gene, partial cds; chloroplast Length = 243 Score = 291 bits (147), Expect = 1e-75 Identities = 204/223 (91%) Strand = Plus / Plus Query: 28 ccctaattgctgctgcttctgttattgctgctggattggccgtagggcttgcttctattg 87 |||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct: 8 ccctaatttctgctgcttccgttattgctgctggattggccgtaggacttgcttctattg 67 Query: 88 gacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagc 147 |||| ||||| ||||||||||||||||| || ||||| ||||||||||| || ||||| | Sbjct: 68 gacccggagtcggtcaaggtactgctgcgggccaagccgtagaaggtatcgctagacaac 127 Query: 148 cagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttatggaagctt 207 |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 128 cagaagcagagggtaaaatacgaggtactttattgcttagtctggcttttatggaagctt 187 Query: 208 taacaatttatggactagttgtggcactagcgcttttatttgc 250 |||||||||| || || || |||||| |||| ||||||||||| Sbjct: 188 taacaatttacgggctggtcgtggcattagcacttttatttgc 230
>emb|AJ970307.1| Cucumis sativus chloroplast complete genome Length = 155293 Score = 291 bits (147), Expect = 1e-75 Identities = 226/251 (90%), Gaps = 1/251 (0%) Strand = Plus / Minus Query: 21 catgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagggcttgc 79 ||||||||| || ||| |||| ||||| ||||||||||||||||||||||| |||||||| Sbjct: 14557 catgaatccactgatttctgccgcttccgttattgctgctggattggccgtggggcttgc 14498 Query: 80 ttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgc 139 ||||||||||||||| ||||||||||||||||||| || |||||||||||||| || || Sbjct: 14497 ttctattggacctgggattggtcaaggtactgctgcgggccaagctgtagaagggatcgc 14438 Query: 140 gagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttat 199 |||||| || || || || || ||||| ||||||||||||||||||||||| |||||||| Sbjct: 14437 gagacaacccgaggcggagggaaaaatccgaggtactttattgcttagtctggcttttat 14378 Query: 200 ggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaacccttt 259 |||||||||||||||||||||||| ||||| ||| |||| |||||||||||||| ||||| Sbjct: 14377 ggaagctttaacaatttatggactggttgtagcattagcacttttatttgcgaatccttt 14318 Query: 260 tgtttaatcct 270 ||||||||||| Sbjct: 14317 tgtttaatcct 14307
>dbj|AP000423.1| Arabidopsis thaliana chloroplast genomic DNA, complete sequence, strain:Columbia Length = 154478 Score = 289 bits (146), Expect = 5e-75 Identities = 209/230 (90%) Strand = Plus / Minus Query: 37 ctgctgcttctgttattgctgctggattggccgtagggcttgcttctattggacctggag 96 |||||||||| |||||||||||||| ||||| || ||||||||||||||||||||||||| Sbjct: 13491 ctgctgcttcggttattgctgctgggttggctgttgggcttgcttctattggacctggag 13432 Query: 97 ttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcag 156 | ||||||||||| ||||| || |||||||| |||||||| |||||||| || || |||| Sbjct: 13431 tcggtcaaggtacagctgcgggtcaagctgtcgaaggtatcgcgagacaacctgaggcag 13372 Query: 157 aaggtaaaatacgaggtactttattgcttagtctagcttttatggaagctttaacaattt 216 |||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||| Sbjct: 13371 aaggaaaaatacgaggtactttattgcttagtttggcttttatggaagctttaacaattt 13312 Query: 217 atggactagttgtggcactagcgcttttatttgcgaacccttttgtttaa 266 |||| || ||||| ||| ||||||||||||||||||| |||||||||||| Sbjct: 13311 atggcctggttgtagcattagcgcttttatttgcgaatccttttgtttaa 13262
>gb|AY521596.1| Cucumis sativus isolate GY-14, chloroplast sequence Length = 16653 Score = 283 bits (143), Expect = 3e-73 Identities = 225/251 (89%), Gaps = 1/251 (0%) Strand = Plus / Minus Query: 21 catgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagggcttgc 79 ||||||||| || ||| |||| ||||| |||||||||||||| |||||||| |||||||| Sbjct: 3958 catgaatccactgatttctgccgcttccgttattgctgctgggttggccgtggggcttgc 3899 Query: 80 ttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgc 139 ||||||||||||||| ||||||||||||||||||| || |||||||||||||| || || Sbjct: 3898 ttctattggacctgggattggtcaaggtactgctgcgggccaagctgtagaagggatcgc 3839 Query: 140 gagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttat 199 |||||| || || || || || ||||| ||||||||||||||||||||||| |||||||| Sbjct: 3838 gagacaacccgaggcggagggaaaaatccgaggtactttattgcttagtctggcttttat 3779 Query: 200 ggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaacccttt 259 |||||||||||||||||||||||| ||||| ||| |||| |||||||||||||| ||||| Sbjct: 3778 ggaagctttaacaatttatggactggttgtagcattagcacttttatttgcgaatccttt 3719 Query: 260 tgtttaatcct 270 ||||||||||| Sbjct: 3718 tgtttaatcct 3708
>gb|AY173934.1| Cucumis sativus ATPase subunit III (atpH) gene, complete cds; chloroplast gene for chloroplast product Length = 639 Score = 283 bits (143), Expect = 3e-73 Identities = 225/251 (89%), Gaps = 1/251 (0%) Strand = Plus / Plus Query: 21 catgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagggcttgc 79 ||||||||| || ||| |||| ||||| |||||||||||||| |||||||| |||||||| Sbjct: 235 catgaatccactgatttctgccgcttccgttattgctgctgggttggccgtggggcttgc 294 Query: 80 ttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgc 139 ||||||||||||||| ||||||||||||||||||| || |||||||||||||| || || Sbjct: 295 ttctattggacctgggattggtcaaggtactgctgcgggccaagctgtagaagggatcgc 354 Query: 140 gagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttat 199 |||||| || || || || || ||||| ||||||||||||||||||||||| |||||||| Sbjct: 355 gagacaacccgaggcggagggaaaaatccgaggtactttattgcttagtctggcttttat 414 Query: 200 ggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaacccttt 259 |||||||||||||||||||||||| ||||| ||| |||| |||||||||||||| ||||| Sbjct: 415 ggaagctttaacaatttatggactggttgtagcattagcacttttatttgcgaatccttt 474 Query: 260 tgtttaatcct 270 ||||||||||| Sbjct: 475 tgtttaatcct 485
>gb|AY274821.1| Cucumis sativus ATPase subunit III mRNA, complete cds Length = 475 Score = 283 bits (143), Expect = 3e-73 Identities = 225/251 (89%), Gaps = 1/251 (0%) Strand = Plus / Plus Query: 21 catgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagggcttgc 79 ||||||||| || ||| |||| ||||| |||||||||||||| |||||||| |||||||| Sbjct: 102 catgaatccactgatttctgccgcttccgttattgctgctgggttggccgtggggcttgc 161 Query: 80 ttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgc 139 ||||||||||||||| ||||||||||||||||||| || |||||||||||||| || || Sbjct: 162 ttctattggacctgggattggtcaaggtactgctgcgggccaagctgtagaagggatcgc 221 Query: 140 gagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttat 199 |||||| || || || || || ||||| ||||||||||||||||||||||| |||||||| Sbjct: 222 gagacaacccgaggcggagggaaaaatccgaggtactttattgcttagtctggcttttat 281 Query: 200 ggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaacccttt 259 |||||||||||||||||||||||| ||||| ||| |||| |||||||||||||| ||||| Sbjct: 282 ggaagctttaacaatttatggactggttgtagcattagcacttttatttgcgaatccttt 341 Query: 260 tgtttaatcct 270 ||||||||||| Sbjct: 342 tgtttaatcct 352
>emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chloroplast plastome I, complete sequence Length = 163935 Score = 283 bits (143), Expect = 3e-73 Identities = 225/251 (89%), Gaps = 1/251 (0%) Strand = Plus / Plus Query: 21 catgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagggcttgc 79 ||||||||| || ||| |||| ||||| ||||||||||||||||| || || |||||||| Sbjct: 52605 catgaatccactgatttctgccgcttccgttattgctgctggattagctgtcgggcttgc 52664 Query: 80 ttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgc 139 |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| || Sbjct: 52665 ttctattggacctggaattggtcaaggtactgctgcgggacaagctgtagaaggtatcgc 52724 Query: 140 gagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttat 199 ||||||||| || ||||| || ||||||||||||||||||||||||||||| |||||||| Sbjct: 52725 gagacagcccgaggcagagggaaaaatacgaggtactttattgcttagtctggcttttat 52784 Query: 200 ggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaacccttt 259 |||||| ||||||||||||||| | ||||| || |||| |||||||||||||| || || Sbjct: 52785 ggaagcgttaacaatttatggattggttgtagccttagcacttttatttgcgaatccctt 52844 Query: 260 tgtttaatcct 270 ||| ||||||| Sbjct: 52845 tgtataatcct 52855
>gb|DQ119058.1| Cucumis sativus cultivar Baekmibaekdadagi plastid, complete genome Length = 155527 Score = 283 bits (143), Expect = 3e-73 Identities = 225/251 (89%), Gaps = 1/251 (0%) Strand = Plus / Minus Query: 21 catgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagggcttgc 79 ||||||||| || ||| |||| ||||| |||||||||||||| |||||||| |||||||| Sbjct: 14548 catgaatccactgatttctgccgcttccgttattgctgctgggttggccgtggggcttgc 14489 Query: 80 ttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgc 139 ||||||||||||||| ||||||||||||||||||| || |||||||||||||| || || Sbjct: 14488 ttctattggacctgggattggtcaaggtactgctgcgggccaagctgtagaagggatcgc 14429 Query: 140 gagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttat 199 |||||| || || || || || ||||| ||||||||||||||||||||||| |||||||| Sbjct: 14428 gagacaacccgaggcggagggaaaaatccgaggtactttattgcttagtctggcttttat 14369 Query: 200 ggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaacccttt 259 |||||||||||||||||||||||| ||||| ||| |||| |||||||||||||| ||||| Sbjct: 14368 ggaagctttaacaatttatggactggttgtagcattagcacttttatttgcgaatccttt 14309 Query: 260 tgtttaatcct 270 ||||||||||| Sbjct: 14308 tgtttaatcct 14298
>emb|X05917.1|CHPSATPC Pea plastid genes rps2, atpI, atpH, atpF, atpA, trnR and trnG coding for ribosomal protein S2, one CF(1) and three CF(O) subunits of ATP synthase and tRNA-Arg and tRNA-Gly Length = 5865 Score = 278 bits (140), Expect = 2e-71 Identities = 222/248 (89%), Gaps = 1/248 (0%) Strand = Plus / Plus Query: 21 catgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagggcttgc 79 ||||||||| || |||||||||||||||||||| |||||||| |||||||| |||||||| Sbjct: 1841 catgaatccactgattgctgctgcttctgttatcgctgctgggttggccgtcgggcttgc 1900 Query: 80 ttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgc 139 ||||||||||||||||||||||||||| || |||||||| ||||||||||| || ||||| Sbjct: 1901 ttctattggacctggagttggtcaaggcacagctgcagggcaagctgtagaggggattgc 1960 Query: 140 gagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttat 199 |||||| || |||||||| | |||||||| ||||||||||| |||||| | |||||||| Sbjct: 1961 gagacaaccggaagcagaggacaaaatacggggtactttattacttagtttggcttttat 2020 Query: 200 ggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaacccttt 259 |||||||||||| |||||||| || ||||| ||| |||||||||||||||| || ||||| Sbjct: 2021 ggaagctttaactatttatgggctggttgtagcattagcgcttttatttgccaatccttt 2080 Query: 260 tgtttaat 267 |||||||| Sbjct: 2081 tgtttaat 2088
>gb|M57711.1|PEACPATPH Pea chloroplast ATP synthase CF0 subunit III (atpH) gene, complete cds Length = 1332 Score = 278 bits (140), Expect = 2e-71 Identities = 222/248 (89%), Gaps = 1/248 (0%) Strand = Plus / Plus Query: 21 catgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagggcttgc 79 ||||||||| || |||||||||||||||||||| |||||||| |||||||| |||||||| Sbjct: 494 catgaatccactgattgctgctgcttctgttatcgctgctgggttggccgtcgggcttgc 553 Query: 80 ttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgc 139 ||||||||||||||||||||||||||| || |||||||| ||||||||||| || ||||| Sbjct: 554 ttctattggacctggagttggtcaaggcacagctgcagggcaagctgtagaggggattgc 613 Query: 140 gagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttat 199 |||||| || |||||||| | |||||||| ||||||||||| |||||| | |||||||| Sbjct: 614 gagacaaccggaagcagaggacaaaatacggggtactttattacttagtttggcttttat 673 Query: 200 ggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaacccttt 259 |||||||||||| |||||||| || ||||| ||| |||||||||||||||| || ||||| Sbjct: 674 ggaagctttaactatttatgggctggttgtagcattagcgcttttatttgccaatccttt 733 Query: 260 tgtttaat 267 |||||||| Sbjct: 734 tgtttaat 741
>gb|DQ069380.1| Ginkgo biloba ATP synthase CF0 C chain (atpH) gene, partial cds; chloroplast Length = 243 Score = 274 bits (138), Expect = 3e-70 Identities = 195/214 (91%) Strand = Plus / Plus Query: 37 ctgctgcttctgttattgctgctggattggccgtagggcttgcttctattggacctggag 96 |||||||||| ||||||||||||||||| |||||||| || |||||||| |||||||| | Sbjct: 17 ctgctgcttccgttattgctgctggattagccgtaggcctcgcttctatcggacctggtg 76 Query: 97 ttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcag 156 |||||||||| |||||||| || |||||||||||||||||||| ||||| |||||||||| Sbjct: 77 ttggtcaaggcactgctgcgggccaagctgtagaaggtattgcaagacaaccagaagcag 136 Query: 157 aaggtaaaatacgaggtactttattgcttagtctagcttttatggaagctttaacaattt 216 | ||||||||||||||||| ||| |||| |||||||||||||||||||||||||| |||| Sbjct: 137 agggtaaaatacgaggtaccttactgctaagtctagcttttatggaagctttaactattt 196 Query: 217 atggactagttgtggcactagcgcttttatttgc 250 ||||||||||||| || ||||| ||||||||||| Sbjct: 197 atggactagttgtagcgctagcacttttatttgc 230
>dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome Length = 150519 Score = 274 bits (138), Expect = 3e-70 Identities = 213/238 (89%) Strand = Plus / Plus Query: 31 taattgctgctgcttctgttattgctgctggattggccgtagggcttgcttctattggac 90 ||||| |||| ||||| |||||||||||||| |||||||| ||||||||||||||||||| Sbjct: 47164 taatttctgccgcttccgttattgctgctgggttggccgttgggcttgcttctattggac 47223 Query: 91 ctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccag 150 |||| ||||||||||| ||||||||||| |||||||||||||| |||||| |||| |||| Sbjct: 47224 ctggggttggtcaaggcactgctgcaggtcaagctgtagaaggaattgcgcgacaaccag 47283 Query: 151 aagcagaaggtaaaatacgaggtactttattgcttagtctagcttttatggaagctttaa 210 | ||||| || |||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct: 47284 aggcagagggaaaaatacgaggtactttattacttagtctggcttttatggaagctttaa 47343 Query: 211 caatttatggactagttgtggcactagcgcttttatttgcgaacccttttgtttaatc 268 | |||||||| || ||||| ||| |||| ||||||||||| || || ||||||||||| Sbjct: 47344 ctatttatgggctggttgtagcattagcacttttatttgcaaatccctttgtttaatc 47401
>gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, complete genome Length = 160286 Score = 274 bits (138), Expect = 3e-70 Identities = 223/250 (89%), Gaps = 1/250 (0%) Strand = Plus / Minus Query: 21 catgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagggcttgc 79 ||||||||| || ||| |||| ||||| |||||||||||||| || || || |||||||| Sbjct: 14974 catgaatccactgatttctgccgcttccgttattgctgctgggttagctgtcgggcttgc 14915 Query: 80 ttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgc 139 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct: 14914 ttctattggacctggagttggtcaaggtactgctgcgggccaagctgtagaaggtattgc 14855 Query: 140 gagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttat 199 |||||||| || || || || ||||||||||||||||||||||||||||| |||||||| Sbjct: 14854 aagacagcccgaggcggagggaaaaatacgaggtactttattgcttagtctggcttttat 14795 Query: 200 ggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaacccttt 259 |||||| ||||||||||||||| | ||||| || ||||||||||||||||||| || || Sbjct: 14794 ggaagcgttaacaatttatggattggttgtagccttagcgcttttatttgcgaatccctt 14735 Query: 260 tgtttaatcc 269 ||| |||||| Sbjct: 14734 tgtgtaatcc 14725
>gb|AF411804.1| Lycopersicon esculentum BAC clone Clemson_ID 47I13, complete sequence Length = 100810 Score = 270 bits (136), Expect = 4e-69 Identities = 208/232 (89%) Strand = Plus / Minus Query: 37 ctgctgcttctgttattgctgctggattggccgtagggcttgcttctattggacctggag 96 |||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 66087 ctgccgcttccgttattgctgctggattggccatagggcttgcttctattggacctggag 66028 Query: 97 ttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcag 156 |||||||||| |||||||| || ||||||||||| ||| | ||||||||||| || |||| Sbjct: 66027 ttggtcaagggactgctgcgggtcaagctgtagagggtttcgcgagacagcctgaggcag 65968 Query: 157 aaggtaaaatacgaggtactttattgcttagtctagcttttatggaagctttaacaattt 216 | || |||||||| ||||| |||| |||||||||||||||||||||||||||||||||| Sbjct: 65967 agggcaaaatacggggtacactattacttagtctagcttttatggaagctttaacaattt 65908 Query: 217 atggactagttgtggcactagcgcttttatttgcgaacccttttgtttaatc 268 ||||||| ||||| ||| |||| ||||||||||| || | |||||||||||| Sbjct: 65907 atggactggttgtagcattagcacttttatttgcaaatctttttgtttaatc 65856
>gb|AC093544.8| Medicago truncatula chloroplast, complete genome, complete sequence Length = 124033 Score = 270 bits (136), Expect = 4e-69 Identities = 208/232 (89%) Strand = Plus / Minus Query: 37 ctgctgcttctgttattgctgctggattggccgtagggcttgcttctattggacctggag 96 |||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||| Sbjct: 76391 ctgctgcttctgttatcgctgctgggttggccgtcgggcttgcttctattggacctggag 76332 Query: 97 ttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcag 156 ||||||||||||| |||||||| |||||||||||||| |||||| |||| || ||||||| Sbjct: 76331 ttggtcaaggtacagctgcagggcaagctgtagaagggattgcgcgacaaccggaagcag 76272 Query: 157 aaggtaaaatacgaggtactttattgcttagtctagcttttatggaagctttaacaattt 216 | | |||||| | ||||||||||| |||||||| |||||||||||||||||||| |||| Sbjct: 76271 aggacaaaataaggggtactttattacttagtctggcttttatggaagctttaactattt 76212 Query: 217 atggactagttgtggcactagcgcttttatttgcgaacccttttgtttaatc 268 |||| || ||||| ||| |||| ||||||||||| || |||||||||||||| Sbjct: 76211 atgggctggttgtagcattagcacttttatttgccaatccttttgtttaatc 76160
>gb|DQ345959.1| Gossypium hirsutum cultivar coker 310 FR chloroplast, complete genome Length = 160301 Score = 268 bits (135), Expect = 2e-68 Identities = 223/251 (88%), Gaps = 1/251 (0%) Strand = Plus / Minus Query: 21 catgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagggcttgc 79 ||||||||| || ||| |||| ||||| |||||||||||||| ||||| || |||||||| Sbjct: 14129 catgaatccactgatttctgccgcttccgttattgctgctgggttggctgtcgggcttgc 14070 Query: 80 ttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgc 139 |||||||||||||||||||||||||||||||||||| || ||||||||||||||||| || Sbjct: 14069 ttctattggacctggagttggtcaaggtactgctgcgggccaagctgtagaaggtatcgc 14010 Query: 140 gagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttat 199 |||||| || || || || || ||||||||||||||||||||||||||| | |||||||| Sbjct: 14009 gagacaacccgaggcggagggaaaaatacgaggtactttattgcttagtttggcttttat 13950 Query: 200 ggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaacccttt 259 ||||||||||||||||||||| || ||||| ||| | || || ||||||||||| || || Sbjct: 13949 ggaagctttaacaatttatgggctggttgtagcattggcactcttatttgcgaatccctt 13890 Query: 260 tgtttaatcct 270 ||||||||||| Sbjct: 13889 tgtttaatcct 13879
>dbj|AP005672.1| Physcomitrella patens subsp. patens chloroplast DNA, complete genome Length = 122890 Score = 254 bits (128), Expect = 3e-64 Identities = 209/236 (88%) Strand = Plus / Minus Query: 31 taattgctgctgcttctgttattgctgctggattggccgtagggcttgcttctattggac 90 ||||| ||||||| |||||||||||||||||||| || ||||| | ||||||||||||| Sbjct: 65345 taatttctgctgcgtctgttattgctgctggattagctgtaggtttagcttctattggac 65286 Query: 91 ctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccag 150 |||| ||||||||||||||||||| || ||||| |||||||||||||| ||||| |||| Sbjct: 65285 ctggtattggtcaaggtactgctgccggtcaagcagtagaaggtattgctagacaaccag 65226 Query: 151 aagcagaaggtaaaatacgaggtactttattgcttagtctagcttttatggaagctttaa 210 |||||||||||||||| ||||| || ||| |||| ||| |||| |||||||||||||||| Sbjct: 65225 aagcagaaggtaaaattcgaggcacgttactgctaagtttagcatttatggaagctttaa 65166 Query: 211 caatttatggactagttgtggcactagcgcttttatttgcgaacccttttgtttaa 266 | |||||||| |||||||| ||| |||||||||||||||| || |||||||||||| Sbjct: 65165 ctatttatggtctagttgtagcattagcgcttttatttgcaaatccttttgtttaa 65110
>emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genome DNA Length = 121024 Score = 252 bits (127), Expect = 1e-63 Identities = 205/231 (88%) Strand = Plus / Plus Query: 37 ctgctgcttctgttattgctgctggattggccgtagggcttgcttctattggacctggag 96 |||||||||||||||||||||||||||| || || || || |||||||||||||||||| Sbjct: 18030 ctgctgcttctgttattgctgctggattagctgtgggcctagcttctattggacctggaa 18089 Query: 97 ttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcag 156 |||||||||| ||||| ||||| |||||||||||||||||||| |||||||| ||||||| Sbjct: 18090 ttggtcaaggcactgcagcaggtcaagctgtagaaggtattgcaagacagcctgaagcag 18149 Query: 157 aaggtaaaatacgaggtactttattgcttagtctagcttttatggaagctttaacaattt 216 |||||||||| |||||||||||| | | ||| |||||||||||||||||||||| |||| Sbjct: 18150 aaggtaaaattcgaggtactttacttttaagtttagcttttatggaagctttaaccattt 18209 Query: 217 atggactagttgtggcactagcgcttttatttgcgaacccttttgtttaat 267 ||||| ||||||| || |||| ||||||||||| || || |||||||||| Sbjct: 18210 atggattagttgtagctttagcacttttatttgcaaatccatttgtttaat 18260
>gb|DQ108467.2| Corchorus olitorius SSR marker J-62-M13F genomic sequence Length = 864 Score = 252 bits (127), Expect = 1e-63 Identities = 221/251 (88%), Gaps = 1/251 (0%) Strand = Plus / Plus Query: 21 catgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagggcttgc 79 ||||||||| || ||| |||| ||||| |||||||||||||| ||||| || || ||||| Sbjct: 174 catgaatccactgatttctgccgcttccgttattgctgctgggttggctgtcggacttgc 233 Query: 80 ttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgc 139 |||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| || Sbjct: 234 ttctattggacctggagttggtcaaggtacagctgcgggccaagctgtagaaggtatcgc 293 Query: 140 gagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttat 199 |||||| || || ||||| || ||||||||||| ||| ||||||||||| | |||||||| Sbjct: 294 gagacaacccgaggcagagggaaaaatacgaggcactctattgcttagtttggcttttat 353 Query: 200 ggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaacccttt 259 ||||||||||||||||||||| | ||||| ||| | || |||||||||||||| ||||| Sbjct: 354 ggaagctttaacaatttatgggttggttgtagcattggcacttttatttgcgaatccttt 413 Query: 260 tgtttaatcct 270 ||||||||||| Sbjct: 414 tgtttaatcct 424
>emb|AL606445.2|OSJN00018 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070O11, complete sequence Length = 134231 Score = 250 bits (126), Expect = 4e-63 Identities = 132/134 (98%) Strand = Plus / Minus Query: 51 attgctgctggattggccgtagggcttgcttctattggacctggagttggtcaaggtact 110 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 49569 attgctgctggattggccgtagggcttgcttctattgggcctggagttggtcaaggtact 49510 Query: 111 gctgcaggacaagctgtagaaggtattgcgagacagccagaagcagaaggtaaaatacga 170 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 49509 gctgcaggacaagctgtagaaggtattgcgagacagccagaagctgaaggtaaaatacga 49450 Query: 171 ggtactttattgct 184 |||||||||||||| Sbjct: 49449 ggtactttattgct 49436
>emb|AL117265.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0811D08, complete sequence Length = 123337 Score = 234 bits (118), Expect = 2e-58 Identities = 130/134 (97%) Strand = Plus / Minus Query: 51 attgctgctggattggccgtagggcttgcttctattggacctggagttggtcaaggtact 110 |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| Sbjct: 30189 attgctgctggattggccatagggcttgcttctattgggcctggagttggtcaaggtact 30130 Query: 111 gctgcaggacaagctgtagaaggtattgcgagacagccagaagcagaaggtaaaatacga 170 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 30129 gctgcaggacaagctgtagaaggtattgcgagacagccagaagttgaaggtaaaatacga 30070 Query: 171 ggtactttattgct 184 |||||||||||||| Sbjct: 30069 ggtactttattgct 30056
>dbj|AB087423.1| Anthoceros formosae chloroplast atpH mRNA for ATPase III subunit, complete cds Length = 286 Score = 222 bits (112), Expect = 9e-55 Identities = 202/232 (87%) Strand = Plus / Plus Query: 37 ctgctgcttctgttattgctgctggattggccgtagggcttgcttctattggacctggag 96 |||||||||| ||||||||||||||||| || || || |||||||||||||||||||| | Sbjct: 49 ctgctgcttccgttattgctgctggattagctgtgggtcttgcttctattggacctggtg 108 Query: 97 ttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcag 156 |||| || |||||||||||||| |||||||| ||||||||||| ||||| || ||||||| Sbjct: 109 ttgggcagggtactgctgcaggtcaagctgtggaaggtattgctagacaacctgaagcag 168 Query: 157 aaggtaaaatacgaggtactttattgcttagtctagcttttatggaagctttaacaattt 216 |||||||||||||||||||||||||| | || ||||||||||||||||| | || |||| Sbjct: 169 aaggtaaaatacgaggtactttattgttaagcttagcttttatggaagctctgactattt 228 Query: 217 atggactagttgtggcactagcgcttttatttgcgaacccttttgtttaatc 268 |||| |||| || || ||||| ||||||||||| || ||||| || ||||| Sbjct: 229 atggtttagtcgtagctctagcacttttatttgcaaatcctttcgtctaatc 280
>gb|AY958085.1| Staurastrum punctulatum chloroplast, complete genome Length = 157089 Score = 216 bits (109), Expect = 6e-53 Identities = 199/229 (86%) Strand = Plus / Minus Query: 37 ctgctgcttctgttattgctgctggattggccgtagggcttgcttctattggacctggag 96 ||||||||||||| ||||||||||| ||||| ||||| | ||||||||||| ||||| Sbjct: 122070 ctgctgcttctgtaattgctgctggtttggctgtaggtttagcttctattggtcctggta 122011 Query: 97 ttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcag 156 |||| ||||| |||||||| ||||||||||||||||||||||| ||||| || ||||| | Sbjct: 122010 ttggacaaggaactgctgctggacaagctgtagaaggtattgcaagacaacctgaagctg 121951 Query: 157 aaggtaaaatacgaggtactttattgcttagtctagcttttatggaagctttaacaattt 216 |||| ||||| || |||||||||||||||||| | ||||| |||||||||||||| |||| Sbjct: 121950 aagggaaaattcgtggtactttattgcttagtttggctttcatggaagctttaactattt 121891 Query: 217 atggactagttgtggcactagcgcttttatttgcgaacccttttgttta 265 |||||||||| || || ||||| || |||||||| || ||||||||||| Sbjct: 121890 atggactagtagtagctctagctctattatttgcaaatccttttgttta 121842
>dbj|AB027572.1| Triticum aestivum chloroplast DNA, 21.1-kb fragment bearing RNA polymerase subunit (rpo) genes Length = 21245 Score = 216 bits (109), Expect = 6e-53 Identities = 116/117 (99%), Gaps = 1/117 (0%) Strand = Plus / Plus Query: 2 gacacgaggaactactcaccatgaatcc-ctaattgctgctgcttctgttattgctgctg 60 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 21129 gacacgaggaactactcaccatgaatccactaattgctgctgcttctgttattgctgctg 21188 Query: 61 gattggccgtagggcttgcttctattggacctggagttggtcaaggtactgctgcag 117 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 21189 gattggccgtagggcttgcttctattggacctggagttggtcaaggtactgctgcag 21245
>gb|AF494278.1| Chaetosphaeridium globosum chloroplast, complete genome Length = 131183 Score = 208 bits (105), Expect = 1e-50 Identities = 214/249 (85%), Gaps = 1/249 (0%) Strand = Plus / Plus Query: 19 accatgaatccct-aattgctgctgcttctgttattgctgctggattggccgtagggctt 77 ||||||||||| | ||||||| ||||||||||||||||||||||||| || ||||| | Sbjct: 18161 accatgaatccattaattgcttctgcttctgttattgctgctggattagctgtaggttta 18220 Query: 78 gcttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtatt 137 ||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||| Sbjct: 18221 gcttctattgggcctggaattggtcaaggtactgctgcaggtcaagctgtagaaggtatt 18280 Query: 138 gcgagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagctttt 197 ||| | || || |||| ||| |||||||| |||||||||| || ||||| ||||||| Sbjct: 18281 gcgcgtcaacctgaagtagatggtaaaatcagaggtactttgttacttagcttagctttc 18340 Query: 198 atggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaaccct 257 |||||||| |||| |||||||| |||||||| || ||||| | |||||||| ||||| Sbjct: 18341 atggaagcactaactatttatggtctagttgtagcgttagcgttattatttgcaaaccca 18400 Query: 258 tttgtttaa 266 ||||||||| Sbjct: 18401 tttgtttaa 18409
>dbj|AP004638.1| Psilotum nudum chloroplast DNA, complete genome Length = 138829 Score = 196 bits (99), Expect = 5e-47 Identities = 198/231 (85%) Strand = Plus / Minus Query: 37 ctgctgcttctgttattgctgctggattggccgtagggcttgcttctattggacctggag 96 ||||||||||||||||||||||||||||||| || || ||||||||||| || ||||| | Sbjct: 18986 ctgctgcttctgttattgctgctggattggcagtgggccttgcttctatcggtcctggtg 18927 Query: 97 ttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcag 156 |||||||||| |||||||| || ||||| || ||||||||||| |||| || ||||| | Sbjct: 18926 ttggtcaaggcactgctgcgggtcaagccgttgaaggtattgcacgacaaccggaagcgg 18867 Query: 157 aaggtaaaatacgaggtactttattgcttagtctagcttttatggaagctttaacaattt 216 ||||||| || || ||||| ||||| | ||||||||||||||||||||| |||| || | Sbjct: 18866 aaggtaagattcggggtaccttattattaagtctagcttttatggaagctctaaccatat 18807 Query: 217 atggactagttgtggcactagcgcttttatttgcgaacccttttgtttaat 267 | |||||||||||||| ||||| ||| ||||||| || ||||| ||||||| Sbjct: 18806 acggactagttgtggctctagcacttctatttgcaaatcctttcgtttaat 18756
>gb|AY660566.1| Huperzia lucidula chloroplast, complete genome Length = 154373 Score = 184 bits (93), Expect = 2e-43 Identities = 168/193 (87%) Strand = Plus / Minus Query: 37 ctgctgcttctgttattgctgctggattggccgtagggcttgcttctattggacctggag 96 |||||||||| ||||||||||||||||| || || || ||||| ||||||||||| || | Sbjct: 82371 ctgctgcttccgttattgctgctggattagctgtgggtcttgcctctattggaccaggtg 82312 Query: 97 ttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcag 156 |||||||||| |||||||| || ||||| |||||||||||||||||||| |||||||| | Sbjct: 82311 ttggtcaaggcactgctgcgggtcaagccgtagaaggtattgcgagacaaccagaagctg 82252 Query: 157 aaggtaaaatacgaggtactttattgcttagtctagcttttatggaagctttaacaattt 216 |||||||||| |||||||| ||||| || || |||| ||||||||||||||||| || | Sbjct: 82251 aaggtaaaattcgaggtaccttattactaagcttagcctttatggaagctttaaccatct 82192 Query: 217 atggactagttgt 229 |||| ||||||| Sbjct: 82191 atggtttagttgt 82179
>gb|DQ124069.1| Coffea arabica clone MN-SSH4-D08 mRNA sequence Length = 172 Score = 167 bits (84), Expect = 5e-38 Identities = 139/156 (89%), Gaps = 1/156 (0%) Strand = Plus / Minus Query: 21 catgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagggcttgc 79 ||||||||| || ||| |||| ||||| |||||||||||||||||||| ||||||||||| Sbjct: 156 catgaatccactgatttctgccgcttccgttattgctgctggattggctgtagggcttgc 97 Query: 80 ttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgc 139 |||||||||||| |||||||||||||| |||||||| || ||||| ||||| ||||| || Sbjct: 96 ttctattggacccggagttggtcaaggaactgctgcgggtcaagccgtagagggtatcgc 37 Query: 140 gagacagccagaagcagaaggtaaaatacgaggtac 175 ||||||||| || ||||| || |||||||||||||| Sbjct: 36 gagacagcccgaggcagagggaaaaatacgaggtac 1
>emb|AJ698931.1| Populus deltoides x Populus maximowiczii partial mRNA for putative chloroplast ATPase subunit III Length = 162 Score = 145 bits (73), Expect = 2e-31 Identities = 91/97 (93%) Strand = Plus / Plus Query: 174 actttattgcttagtctagcttttatggaagctttaacaatttatggactagttgtggca 233 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 1 actttattgcttagtctggcttttatggaagctttaacaatttatggactggttgtagca 60 Query: 234 ctagcgcttttatttgcgaacccttttgtttaatcct 270 |||| |||||||||||||| |||||||||||||||| Sbjct: 61 ttagcacttttatttgcgaatccttttgtttaatcct 97
>emb|X03575.1|CHPSATPG Pea chloroplast genes for F(O)-ATP synthase subunits a and c (partial) Length = 1792 Score = 131 bits (66), Expect = 3e-27 Identities = 91/98 (92%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 21 catgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagggcttgc 79 ||||||||| || |||||||||||||||||||| |||||||| |||||||| |||||||| Sbjct: 1695 catgaatccactgattgctgctgcttctgttatcgctgctgggttggccgtcgggcttgc 1754 Query: 80 ttctattggacctggagttggtcaaggtactgctgcag 117 ||||||||||||||||||||||||||| || ||||||| Sbjct: 1755 ttctattggacctggagttggtcaaggcacagctgcag 1792
>dbj|AB086179.1| Anthoceros formosae chloroplast DNA, complete genome Length = 161162 Score = 127 bits (64), Expect = 4e-26 Identities = 154/184 (83%) Strand = Plus / Plus Query: 37 ctgctgcttctgttattgctgctggattggccgtagggcttgcttctattggacctggag 96 |||||||||| |||| |||||||||||| || || || ||||||| ||||||| ||| | Sbjct: 16746 ctgctgcttccgttactgctgctggattagctgtgggtcttgcttttattggatttggtg 16805 Query: 97 ttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcag 156 |||| || |||||||||||||| ||||||| |||||||||| ||| | || ||||||| Sbjct: 16806 ttgggcagggtactgctgcaggttaagctgtggaaggtattgttagataacctgaagcag 16865 Query: 157 aaggtaaaatacgaggtactttattgcttagtctagcttttatggaagctttaacaattt 216 ||||||||||||||||||||| |||| || |||||| |||||||||| | || |||| Sbjct: 16866 aaggtaaaatacgaggtacttcattgtcaagcttagcttctatggaagctctgactattt 16925 Query: 217 atgg 220 |||| Sbjct: 16926 atgg 16929
>dbj|AP002054.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: T15D2 Length = 87219 Score = 123 bits (62), Expect = 6e-25 Identities = 122/142 (85%) Strand = Plus / Minus Query: 37 ctgctgcttctgttattgctgctggattggccgtagggcttgcttctattggacctggag 96 |||||||||| ||||||| ||| || ||||| || |||||||||||||||| |||||||| Sbjct: 36003 ctgctgcttcggttattgttgccgggttggctgttgggcttgcttctattgaacctggag 35944 Query: 97 ttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcag 156 | |||||||||| |||| || |||||||| |||||||| | |||||| || || |||| Sbjct: 35943 tcagtcaaggtacaactgcgggtcaagctgtcgaaggtatcgtgagacaacctgaggcag 35884 Query: 157 aaggtaaaatacgaggtacttt 178 |||| ||||||||||||||||| Sbjct: 35883 aaggaaaaatacgaggtacttt 35862 Score = 99.6 bits (50), Expect = 9e-18 Identities = 83/94 (88%) Strand = Plus / Minus Query: 173 tactttattgcttagtctagcttttatggaagctttaacaatttatggactagttgtggc 232 |||||||||||||||| | | ||||||||||||||||||||||||||| || |||| || Sbjct: 33709 tactttattgcttagtttggtttttatggaagctttaacaatttatggtctgcttgtagc 33650 Query: 233 actagcgcttttatttgcgaacccttttgtttaa 266 | || |||||||||||| ||| |||||||||||| Sbjct: 33649 attaacgcttttatttgtgaatccttttgtttaa 33616
>gb|AY178864.1| Adiantum capillus-veneris chloroplast, complete genome Length = 150568 Score = 121 bits (61), Expect = 3e-24 Identities = 130/153 (84%) Strand = Plus / Minus Query: 69 gtagggcttgcttctattggacctggagttggtcaaggtactgctgcaggacaagctgta 128 ||||| |||||||| || ||||| || ||||||||||| ||||| || || || || || Sbjct: 13144 gtaggccttgcttcaatcggacccggtgttggtcaaggcactgccgcgggtcaggcggtc 13085 Query: 129 gaaggtattgcgagacagccagaagcagaaggtaaaatacgaggtactttattgcttagt 188 || ||||| || |||||||||||||||||||||||||||||||| ||||||||| | ||| Sbjct: 13084 gagggtatagcaagacagccagaagcagaaggtaaaatacgaggcactttattgttaagt 13025 Query: 189 ctagcttttatggaagctttaacaatttatgga 221 ||||| ||||||||||| |||||||||||| Sbjct: 13024 tcggctttcatggaagctttgacaatttatgga 12992
>gb|AY652682.1| Senecio vulgaris microsatellite V34 sequence Length = 668 Score = 119 bits (60), Expect = 1e-23 Identities = 82/88 (93%), Gaps = 1/88 (1%) Strand = Plus / Plus Query: 21 catgaatcc-ctaattgctgctgcttctgttattgctgctggattggccgtagggcttgc 79 ||||||||| || ||| |||| ||||| |||||||||||||||||||| ||||||||||| Sbjct: 12 catgaatccactgatttctgccgcttccgttattgctgctggattggctgtagggcttgc 71 Query: 80 ttctattggacctggagttggtcaaggt 107 |||||||||||||||||||||||||||| Sbjct: 72 ttctattggacctggagttggtcaaggt 99
>gb|AF166114.1|AF166114 Mesostigma viride chloroplast DNA, complete genome Length = 118360 Score = 119 bits (60), Expect = 1e-23 Identities = 189/232 (81%) Strand = Plus / Minus Query: 31 taattgctgctgcttctgttattgctgctggattggccgtagggcttgcttctattggac 90 ||||| |||| |||||||| | |||||||| || || ||||| | ||||||||||| | Sbjct: 30035 taatttctgcagcttctgtattagctgctggtttagcagtaggtttagcttctattggtc 29976 Query: 91 ctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccag 150 |||| |||||||||||||||||||| || ||||| | ||||||||||| ||||| || | Sbjct: 29975 ctggcgttggtcaaggtactgctgctggtcaagcacttgaaggtattgcaagacaaccgg 29916 Query: 151 aagcagaaggtaaaatacgaggtactttattgcttagtctagcttttatggaagctttaa 210 | || ||||| ||||| |||| ||| |||| | ||| | |||||||||||| |||||| Sbjct: 29915 aggctgaaggcaaaattagaggcactctattattaagttttgcttttatggaatctttaa 29856 Query: 211 caatttatggactagttgtggcactagcgcttttatttgcgaacccttttgt 262 | ||||| || || || || |||||||| || |||||||| ||||||||||| Sbjct: 29855 ctatttacggtcttgtagtagcactagctctattatttgcaaacccttttgt 29804
>gb|AY673996.1| Gracilaria tenuistipitata var. liui chloroplast, complete genome Length = 183883 Score = 115 bits (58), Expect = 2e-22 Identities = 175/214 (81%) Strand = Plus / Plus Query: 37 ctgctgcttctgttattgctgctggattggccgtagggcttgcttctattggacctggag 96 |||| ||||| ||||| |||||||| | || ||||| |||||| | ||||||||||| Sbjct: 130059 ctgccgcttcagttatagctgctggtcttgctgtaggtcttgctgcgattggacctggga 130118 Query: 97 ttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcag 156 |||||||||||| |||||||| | |||||||| ||||||||||| || ||||| | | Sbjct: 130119 ttggtcaaggtagtgctgcagctaatgctgtagagggtattgcgaggcaaccagaggttg 130178 Query: 157 aaggtaaaatacgaggtactttattgcttagtctagcttttatggaagctttaacaattt 216 | ||||| || |||||||| ||||| | ||| ||||||||||||| |||||||||| | Sbjct: 130179 agggtaagattcgaggtacattattattaagtttagcttttatggagtctttaacaatat 130238 Query: 217 atggactagttgtggcactagcgcttttatttgc 250 |||| ||||||| |||||| | ||||||||||| Sbjct: 130239 atgggttagttgttgcactatcacttttatttgc 130272
>gb|AY958086.1| Zygnema circumcarinatum chloroplast, complete genome Length = 165372 Score = 111 bits (56), Expect = 2e-21 Identities = 119/140 (85%) Strand = Plus / Minus Query: 37 ctgctgcttctgttattgctgctggattggccgtagggcttgcttctattggacctggag 96 |||||||||| || || |||||||| || || ||||| | || |||||||| ||||| | Sbjct: 72353 ctgctgcttccgtaatcgctgctggtttagctgtaggcttggcatctattggtcctggcg 72294 Query: 97 ttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcag 156 |||||||||| |||||||| ||||||||||| ||||||||||| ||||| |||||||| | Sbjct: 72293 ttggtcaaggaactgctgctggacaagctgttgaaggtattgcaagacaaccagaagctg 72234 Query: 157 aaggtaaaatacgaggtact 176 |||| || || ||||||||| Sbjct: 72233 aaggcaagattcgaggtact 72214
>gb|U38804.1|PPU38804 Porphyra purpurea chloroplast, complete genome Length = 191028 Score = 109 bits (55), Expect = 1e-20 Identities = 130/155 (83%) Strand = Plus / Minus Query: 75 cttgcttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggt 134 |||||| | ||||| ||||| |||||||||||| ||| |||| | |||||||||||| Sbjct: 46760 cttgctgcaattggccctggtattggtcaaggtagtgcagcagctaatgctgtagaaggt 46701 Query: 135 attgcgagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagct 194 ||||| ||||||||||||| |||||| ||||| ||||||| || || | ||| |||| Sbjct: 46700 attgctagacagccagaagtagaaggaaaaattagaggtacattgttattaagtttagca 46641 Query: 195 tttatggaagctttaacaatttatggactagttgt 229 ||||||||| |||||||||||||||| |||||||| Sbjct: 46640 tttatggaatctttaacaatttatggtctagttgt 46606
>gb|AF060582.1|AF060582 Gossypium barbadense clone pXP027 repetitive DNA sequence Length = 430 Score = 105 bits (53), Expect = 2e-19 Identities = 86/97 (88%) Strand = Plus / Plus Query: 174 actttattgcttagtctagcttttatggaagctttaacaatttatggactagttgtggca 233 ||||||||||||||| | ||||||||||||||||||||||||||||| || ||||| ||| Sbjct: 1 actttattgcttagtttggcttttatggaagctttaacaatttatgggctggttgtagca 60 Query: 234 ctagcgcttttatttgcgaacccttttgtttaatcct 270 | || || ||||||||||| || ||||||||||||| Sbjct: 61 ttggcactcttatttgcgaatccctttgtttaatcct 97
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 101 bits (51), Expect = 2e-18 Identities = 152/183 (83%), Gaps = 7/183 (3%) Strand = Plus / Minus Query: 371 tttactcctatttattactcttggaattatctatttatcgggacagataataccgcattc 430 |||| ||||||||||||||| ||||||| ||||||||| ||||||||||||||| || | Sbjct: 5870043 tttaatcctatttattactcctggaattttctatttatggggacagataatacctcaccc 5869984 Query: 431 taggaagggctgagttg-agtatgattaattt----agaagatatgctcgccttcttatt 485 ||||||| || | ||| || |||| |||||| || | ||||||| || |||| | Sbjct: 5869983 taggaagagccgttttgaaggatgactaatttttagaggatatatgcttgctatcttcct 5869924 Query: 486 tcccgtccttagtttaggaaagtggaaa--gttttttccttttattttaggaattttggg 543 |||||||||| |||||||| |||| ||| ||||||||||||||||||||||||||||| Sbjct: 5869923 tcccgtcctttgtttaggatagtgaaaaatattttttccttttattttaggaattttggg 5869864 Query: 544 aac 546 ||| Sbjct: 5869863 aac 5869861 Score = 69.9 bits (35), Expect = 8e-09 Identities = 35/35 (100%) Strand = Plus / Minus Query: 236 agcgcttttatttgcgaacccttttgtttaatcct 270 ||||||||||||||||||||||||||||||||||| Sbjct: 5870171 agcgcttttatttgcgaacccttttgtttaatcct 5870137 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 33 attgctgctgcttctgttattgctgctg 60 |||||||||||| || |||||||||||| Sbjct: 30285105 attgctgctgctacttttattgctgctg 30285078
>dbj|AP003525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0537F07 Length = 147724 Score = 101 bits (51), Expect = 2e-18 Identities = 152/183 (83%), Gaps = 7/183 (3%) Strand = Plus / Minus Query: 371 tttactcctatttattactcttggaattatctatttatcgggacagataataccgcattc 430 |||| ||||||||||||||| ||||||| ||||||||| ||||||||||||||| || | Sbjct: 70818 tttaatcctatttattactcctggaattttctatttatggggacagataatacctcaccc 70759 Query: 431 taggaagggctgagttg-agtatgattaattt----agaagatatgctcgccttcttatt 485 ||||||| || | ||| || |||| |||||| || | ||||||| || |||| | Sbjct: 70758 taggaagagccgttttgaaggatgactaatttttagaggatatatgcttgctatcttcct 70699 Query: 486 tcccgtccttagtttaggaaagtggaaa--gttttttccttttattttaggaattttggg 543 |||||||||| |||||||| |||| ||| ||||||||||||||||||||||||||||| Sbjct: 70698 tcccgtcctttgtttaggatagtgaaaaatattttttccttttattttaggaattttggg 70639 Query: 544 aac 546 ||| Sbjct: 70638 aac 70636 Score = 69.9 bits (35), Expect = 8e-09 Identities = 35/35 (100%) Strand = Plus / Minus Query: 236 agcgcttttatttgcgaacccttttgtttaatcct 270 ||||||||||||||||||||||||||||||||||| Sbjct: 70946 agcgcttttatttgcgaacccttttgtttaatcct 70912
>dbj|AK072439.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111C14, full insert sequence Length = 2720 Score = 101 bits (51), Expect = 2e-18 Identities = 152/183 (83%), Gaps = 7/183 (3%) Strand = Plus / Plus Query: 371 tttactcctatttattactcttggaattatctatttatcgggacagataataccgcattc 430 |||| ||||||||||||||| ||||||| ||||||||| ||||||||||||||| || | Sbjct: 921 tttaatcctatttattactcctggaattttctatttatggggacagataatacctcaccc 980 Query: 431 taggaagggctgagttg-agtatgattaattt----agaagatatgctcgccttcttatt 485 ||||||| || | ||| || |||| |||||| || | ||||||| || |||| | Sbjct: 981 taggaagagccgttttgaaggatgactaatttttagaggatatatgcttgctatcttcct 1040 Query: 486 tcccgtccttagtttaggaaagtggaaa--gttttttccttttattttaggaattttggg 543 |||||||||| |||||||| |||| ||| ||||||||||||||||||||||||||||| Sbjct: 1041 tcccgtcctttgtttaggatagtgaaaaatattttttccttttattttaggaattttggg 1100 Query: 544 aac 546 ||| Sbjct: 1101 aac 1103 Score = 69.9 bits (35), Expect = 8e-09 Identities = 35/35 (100%) Strand = Plus / Plus Query: 236 agcgcttttatttgcgaacccttttgtttaatcct 270 ||||||||||||||||||||||||||||||||||| Sbjct: 793 agcgcttttatttgcgaacccttttgtttaatcct 827
>emb|Z67753.1|OSCHLPLXX Odontella sinensis complete chloroplast genome Length = 119704 Score = 99.6 bits (50), Expect = 9e-18 Identities = 155/190 (81%) Strand = Plus / Plus Query: 37 ctgctgcttctgttattgctgctggattggccgtagggcttgcttctattggacctggag 96 |||||||||||||||| |||||||| || || | || | ||| |||| || ||||| Sbjct: 72243 ctgctgcttctgttatagctgctggtttagcgattggtttagctgctatcggccctggta 72302 Query: 97 ttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcag 156 |||||||||||| |||||| || |||||||||||||||||||| | || || |||| || Sbjct: 72303 ttggtcaaggtaatgctgctggtcaagctgtagaaggtattgctcgtcaacctgaaggag 72362 Query: 157 aaggtaaaatacgaggtactttattgcttagtctagcttttatggaagctttaacaattt 216 || ||||| || ||||| ||||| | ||| ||||||| ||||||||||||||||||| Sbjct: 72363 aaaacaaaattcgtggtacgttattattaagtttagctttcatggaagctttaacaattt 72422 Query: 217 atggactagt 226 |||| ||||| Sbjct: 72423 atggtctagt 72432
>emb|X60752.1|CHOSATPA O.sinensis chloroplast ATPase subunits Length = 5399 Score = 99.6 bits (50), Expect = 9e-18 Identities = 155/190 (81%) Strand = Plus / Plus Query: 37 ctgctgcttctgttattgctgctggattggccgtagggcttgcttctattggacctggag 96 |||||||||||||||| |||||||| || || | || | ||| |||| || ||||| Sbjct: 1750 ctgctgcttctgttatagctgctggtttagcgattggtttagctgctatcggccctggta 1809 Query: 97 ttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcag 156 |||||||||||| |||||| || |||||||||||||||||||| | || || |||| || Sbjct: 1810 ttggtcaaggtaatgctgctggtcaagctgtagaaggtattgctcgtcaacctgaaggag 1869 Query: 157 aaggtaaaatacgaggtactttattgcttagtctagcttttatggaagctttaacaattt 216 || ||||| || ||||| ||||| | ||| ||||||| ||||||||||||||||||| Sbjct: 1870 aaaacaaaattcgtggtacgttattattaagtttagctttcatggaagctttaacaattt 1929 Query: 217 atggactagt 226 |||| ||||| Sbjct: 1930 atggtctagt 1939
>gb|U30821.1|CPU30821 Cyanophora paradoxa cyanelle, complete genome Length = 135599 Score = 99.6 bits (50), Expect = 9e-18 Identities = 161/198 (81%) Strand = Plus / Minus Query: 69 gtagggcttgcttctattggacctggagttggtcaaggtactgctgcaggacaagctgta 128 ||||| |||||| ||||||| ||||| |||||||||| ||||| ||||| ||||||||| Sbjct: 74203 gtaggtcttgctgctattggccctggtattggtcaaggaactgcagcaggtcaagctgta 74144 Query: 129 gaaggtattgcgagacagccagaagcagaaggtaaaatacgaggtactttattgcttagt 188 ||||||||||| | || || |||| || || ||||| ||||||| ||| | |||||| Sbjct: 74143 gaaggtattgctcgtcaacctgaagttgatggaaaaattagaggtaccttacttcttagt 74084 Query: 189 ctagcttttatggaagctttaacaatttatggactagttgtggcactagcgcttttattt 248 |||| ||||||||||| ||||| ||||| || || ||||| ||| |||| | ||||| Sbjct: 74083 ttagcatttatggaagcattaactatttacggtcttgttgttgcattagcattattattc 74024 Query: 249 gcgaacccttttgtttaa 266 || || |||||||||||| Sbjct: 74023 gcaaatccttttgtttaa 74006
>gb|DQ396875.1| Scenedesmus obliquus strain UTEX 393 chloroplast, complete genome Length = 161452 Score = 95.6 bits (48), Expect = 1e-16 Identities = 183/228 (80%) Strand = Plus / Minus Query: 34 ttgctgctgcttctgttattgctgctggattggccgtagggcttgcttctattggacctg 93 |||||||||| |||||| | |||||||||| || || || |||||| ||||||| |||| Sbjct: 3498 ttgctgctgcatctgttgtatctgctggattagctgttggtcttgctgctattggtcctg 3439 Query: 94 gagttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaag 153 | | ||||||||||||||||| || | ||||| ||||||||||| ||||| || |||| Sbjct: 3438 gtatgggtcaaggtactgctgctggttatgctgttgaaggtattgctagacaacctgaag 3379 Query: 154 cagaaggtaaaatacgaggtactttattgcttagtctagcttttatggaagctttaacaa 213 | ||||| ||||| || ||| || | || | ||| | ||||| |||||| ||||||| | Sbjct: 3378 ctgaaggaaaaatccgtggtgctctgttattaagtttcgctttcatggaatctttaacta 3319 Query: 214 tttatggactagttgtggcactagcgcttttatttgcgaacccttttg 261 ||||||| |||| || || |||| ||||||||||| ||||| |||| Sbjct: 3318 tttatggtttagtagttgctttagcacttttatttgctaacccatttg 3271
>dbj|AB001684.1| Chlorella vulgaris C-27 chloroplast DNA, complete sequence Length = 150613 Score = 95.6 bits (48), Expect = 1e-16 Identities = 183/228 (80%) Strand = Plus / Minus Query: 34 ttgctgctgcttctgttattgctgctggattggccgtagggcttgcttctattggacctg 93 ||||||| ||| ||||||||||||||| | || ||||| |||||| ||||||| |||| Sbjct: 15626 ttgctgccgctagtgttattgctgctggtcttgctgtaggtcttgctgctattgggcctg 15567 Query: 94 gagttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaag 153 || | || ||||| |||||||| || | || |||||||||||||| | || ||||||| Sbjct: 15566 gaatgggccaaggaactgctgctggttatgcagtagaaggtattgctcgtcaaccagaag 15507 Query: 154 cagaaggtaaaatacgaggtactttattgcttagtctagcttttatggaagctttaacaa 213 ||||||||||||| || ||| || | || | ||| | || ||||||||| ||||||| | Sbjct: 15506 cagaaggtaaaatccgtggtgctcttttattaagtttcgcatttatggaatctttaacta 15447 Query: 214 tttatggactagttgtggcactagcgcttttatttgcgaacccttttg 261 ||||||| ||||||| || |||| |||||||| || ||||| |||| Sbjct: 15446 tttatggtttagttgttgctttagctcttttattcgcaaacccatttg 15399
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 93.7 bits (47), Expect = 6e-16 Identities = 71/79 (89%) Strand = Plus / Minus Query: 97 ttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcag 156 |||||||||||| ||| |||||||||||||||||||||||||| | ||||| ||||||| Sbjct: 3236902 ttggtcaaggtaatgcagcaggacaagctgtagaaggtattgcccgtcagcccgaagcag 3236843 Query: 157 aaggtaaaatacgaggtac 175 |||||||||| || ||||| Sbjct: 3236842 aaggtaaaattcgcggtac 3236824
>gb|AF242564.1|AF242564 Anabaena PCC7120 atp1 operon, complete sequence Length = 7604 Score = 93.7 bits (47), Expect = 6e-16 Identities = 71/79 (89%) Strand = Plus / Plus Query: 97 ttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcag 156 |||||||||||| ||| |||||||||||||||||||||||||| | ||||| ||||||| Sbjct: 1627 ttggtcaaggtaatgcagcaggacaagctgtagaaggtattgcccgtcagcccgaagcag 1686 Query: 157 aaggtaaaatacgaggtac 175 |||||||||| || ||||| Sbjct: 1687 aaggtaaaattcgcggtac 1705
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 93.7 bits (47), Expect = 6e-16 Identities = 71/79 (89%) Strand = Plus / Minus Query: 97 ttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcag 156 |||||||||||| ||| |||||||||||||||||||||||||| | ||||| ||||||| Sbjct: 8165 ttggtcaaggtaatgcagcaggacaagctgtagaaggtattgcccgtcagcccgaagcag 8106 Query: 157 aaggtaaaatacgaggtac 175 |||||||||| || ||||| Sbjct: 8105 aaggtaaaattcgcggtac 8087
>gb|DQ291132.1| Oltmannsiellopsis viridis chloroplast, complete genome Length = 151933 Score = 83.8 bits (42), Expect = 6e-13 Identities = 120/146 (82%) Strand = Plus / Minus Query: 36 gctgctgcttctgttattgctgctggattggccgtagggcttgcttctattggacctgga 95 ||||||||||| ||| |||||||||| || | ||||| | ||| ||||||| ||||| Sbjct: 108868 gctgctgcttcagttgttgctgctggtttatctgtaggtttagctgctattggtcctggt 108809 Query: 96 gttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagca 155 | |||||||||||||||||||| | ||||| ||||||||||| | || |||||||| Sbjct: 108808 atgggtcaaggtactgctgcaggttacgctgttgaaggtattgcacgtcaaccagaagct 108749 Query: 156 gaaggtaaaatacgaggtactttatt 181 ||||||||||| || ||| ||||||| Sbjct: 108748 gaaggtaaaatccgtggtgctttatt 108723
>gb|AF022186.2|AF022186 Cyanidium caldarium strain RK1 chloroplast, complete genome Length = 164921 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Plus Query: 141 agacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttatg 200 ||||| || ||||||||||| ||||| ||||||||||| || | ||| ||||||||||| Sbjct: 19708 agacaacctgaagcagaaggcaaaattagaggtactttactgttaagtttagcttttatg 19767 Query: 201 gaagctttaacaatttatggactagttgt 229 ||| | ||||||||||||||| ||||||| Sbjct: 19768 gaatcattaacaatttatggattagttgt 19796
>gb|AF041468.1| Guillardia theta complete plastid genome Length = 121524 Score = 79.8 bits (40), Expect = 9e-12 Identities = 148/184 (80%) Strand = Plus / Minus Query: 37 ctgctgcttctgttattgctgctggattggccgtagggcttgcttctattggacctggag 96 |||||||||||||| ||||| |||| || | || || | ||| ||||||| ||||| Sbjct: 66899 ctgctgcttctgttgttgcttctggtttatctgttggtttagctgctattggtcctggta 66840 Query: 97 ttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcag 156 ||||||||||||| || || | ||||||||| ||||| ||||| | || |||||||||| Sbjct: 66839 ttggtcaaggtacagcagctgcacaagctgtggaaggaattgctcgccaaccagaagcag 66780 Query: 157 aaggtaaaatacgaggtactttattgcttagtctagcttttatggaagctttaacaattt 216 |||| | ||| || ||||||||| | |||||| ||||||| |||||| | |||| |||| Sbjct: 66779 aaggaagaatccgtggtactttactacttagtttagctttcatggaatcactaactattt 66720 Query: 217 atgg 220 |||| Sbjct: 66719 atgg 66716
>emb|CR954196.1| Medicago truncatula chromosome 5 clone mth2-157e5, COMPLETE SEQUENCE Length = 132419 Score = 75.8 bits (38), Expect = 1e-10 Identities = 59/66 (89%) Strand = Plus / Plus Query: 203 agctttaacaatttatggactagttgtggcactagcgcttttatttgcgaacccttttgt 262 ||||||||| ||||||||||| ||||| ||| |||| ||||||||||| || |||||||| Sbjct: 45319 agctttaactatttatggactggttgtagcattagcacttttatttgccaatccttttgt 45378 Query: 263 ttaatc 268 |||||| Sbjct: 45379 ttaatc 45384
>dbj|AP006715.1| Porphyra yezoensis chloroplast DNA, complete genome Length = 191952 Score = 73.8 bits (37), Expect = 5e-10 Identities = 109/133 (81%) Strand = Plus / Minus Query: 97 ttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcag 156 |||||||||||| ||| |||| | ||||| ||||||||||| ||||||||||||| || Sbjct: 46803 ttggtcaaggtagtgcagcagctaatgctgtcgaaggtattgctagacagccagaagtag 46744 Query: 157 aaggtaaaatacgaggtactttattgcttagtctagcttttatggaagctttaacaattt 216 |||| || || || ||||| | | || ||| |||| ||||||||| |||||||||||| Sbjct: 46743 aaggaaagattcggggtacacttcttctaagtttagcatttatggaatctttaacaattt 46684 Query: 217 atggactagttgt 229 | || |||||||| Sbjct: 46683 acggcctagttgt 46671
>emb|AJ236874.1|PWI236874 Prototheca wickerhamii chloroplast rpl12, tRNA-Arg(CCG), tRNA-Ser(GCU), tRNA-Arg(UCU), tRNA-Thr(UGU), rps2, atpI, atpH, atpF, atpA, tRNA-Met, tRNA-Asp(GUC), tRNA-Ile(CAU), tRNA-Leu(UAG) genes Length = 6008 Score = 71.9 bits (36), Expect = 2e-09 Identities = 150/188 (79%) Strand = Plus / Plus Query: 75 cttgcttctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggt 134 |||||| ||||||| || || |||| ||||| || |||||||| | |||||||||||| Sbjct: 2910 cttgctactattggtccaggcattggccaaggaacagctgcaggttatgctgtagaaggt 2969 Query: 135 attgcgagacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagct 194 ||||| | || ||||||||||| |||||||| |||| | ||| | | ||| | ||| Sbjct: 2970 attgcacgccaaccagaagcagagggtaaaattagaggcgccttacttttaagttttgct 3029 Query: 195 tttatggaagctttaacaatttatggactagttgtggcactagcgcttttatttgcgaac 254 ||||||||| | |||||||| ||||| ||||||| || |||| ||||||||||| || Sbjct: 3030 tttatggaatccttaacaatctatggtttagttgttgctttagcacttttatttgcaaat 3089 Query: 255 ccttttgt 262 |||||||| Sbjct: 3090 ccttttgt 3097
>gb|AF137379.1| Nephroselmis olivacea chloroplast DNA, complete genome Length = 200799 Score = 69.9 bits (35), Expect = 8e-09 Identities = 158/199 (79%) Strand = Plus / Minus Query: 31 taattgctgctgcttctgttattgctgctggattggccgtagggcttgcttctattggac 90 ||||||||||||| |||||| |||||||||| | || ||||| || || || ||||| | Sbjct: 20174 taattgctgctgcgtctgttgttgctgctggtcttgctgtaggtctagcatccattggtc 20115 Query: 91 ctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccag 150 | || | |||||||| || ||||| || |||||||||| ||||||||| | || || | Sbjct: 20114 cagggatcggtcaaggaaccgctgctggtcaagctgtaggaggtattgcacgtcaacctg 20055 Query: 151 aagcagaaggtaaaatacgaggtactttattgcttagtctagcttttatggaagctttaa 210 |||||||||| ||||| || || ||| | | | ||||| || |||||||||||| ||| Sbjct: 20054 aagcagaaggaaaaatccgcggaactcttcttttgagtcttgcgtttatggaagctctaa 19995 Query: 211 caatttatggactagttgt 229 | ||||| ||||| ||||| Sbjct: 19994 ctatttacggacttgttgt 19976
>gb|AY581236.1| Lolium perenne atpI-atpH intergenic spacer, partial sequence; and AtpH (atpH) gene, partial cds; chloroplast Length = 80 Score = 67.9 bits (34), Expect = 3e-08 Identities = 44/46 (95%), Gaps = 1/46 (2%) Strand = Plus / Plus Query: 2 gacacgaggaactactcaccatgaatcc-ctaattgctgctgcttc 46 |||||||||||||||||| ||||||||| ||||||||||||||||| Sbjct: 35 gacacgaggaactactcatcatgaatccactaattgctgctgcttc 80
>emb|X63382.1|PLASATPG Antithamnion sp. rhodoplast genes atpI, atpH, atpG, atpF, atpD, atpA, orf1, orf2 and orf3 Length = 6565 Score = 67.9 bits (34), Expect = 3e-08 Identities = 82/98 (83%) Strand = Plus / Plus Query: 129 gaaggtattgcgagacagccagaagcagaaggtaaaatacgaggtactttattgcttagt 188 ||||||||||| ||||| ||||||| ||||||||||| ||||||| ||| | | ||| Sbjct: 1357 gaaggtattgcaagacaaccagaagttgaaggtaaaattagaggtacgttactattaagt 1416 Query: 189 ctagcttttatggaagctttaacaatttatggactagt 226 |||| || |||||| ||||||||||||||||| |||| Sbjct: 1417 ttagcgttcatggaatctttaacaatttatggattagt 1454
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Minus Query: 516 tttttccttttattttaggaattttgggaac 546 ||||||||||||||||||||||||||||||| Sbjct: 3319432 tttttccttttattttaggaattttgggaac 3319402
>dbj|AP004460.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0438H08 Length = 148626 Score = 61.9 bits (31), Expect = 2e-06 Identities = 31/31 (100%) Strand = Plus / Minus Query: 516 tttttccttttattttaggaattttgggaac 546 ||||||||||||||||||||||||||||||| Sbjct: 96999 tttttccttttattttaggaattttgggaac 96969
>emb|X70810.2|CLEGCGA Euglena gracilis chloroplast complete genome Length = 143171 Score = 60.0 bits (30), Expect = 8e-06 Identities = 96/118 (81%) Strand = Plus / Plus Query: 150 gaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttatggaagcttta 209 |||||||||||||||||| |||| |||||||| | | ||||||| |||||||| ||| Sbjct: 64581 gaagcagaaggtaaaataagaggaactttattattatctttagctttcatggaagcatta 64640 Query: 210 acaatttatggactagttgtggcactagcgcttttatttgcgaacccttttgtttaat 267 || || |||||| |||| || || |||| | |||||||||| ||||||||||||| Sbjct: 64641 actatatatggattagtagttgctttagctataatatttgcgaatccttttgtttaat 64698
>emb|Z11874.1|CHEGZ Euglena gracilis Z chloroplast DNA Length = 41017 Score = 60.0 bits (30), Expect = 8e-06 Identities = 96/118 (81%) Strand = Plus / Plus Query: 150 gaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttatggaagcttta 209 |||||||||||||||||| |||| |||||||| | | ||||||| |||||||| ||| Sbjct: 33873 gaagcagaaggtaaaataagaggaactttattattatctttagctttcatggaagcatta 33932 Query: 210 acaatttatggactagttgtggcactagcgcttttatttgcgaacccttttgtttaat 267 || || |||||| |||| || || |||| | |||||||||| ||||||||||||| Sbjct: 33933 actatatatggattagtagttgctttagctataatatttgcgaatccttttgtttaat 33990
>gb|AC149302.1| Solanum demissum chromosome 11 clone PGEC400L14 map MAP_LOC, complete sequence Length = 136874 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 172 gtactttattgcttagtctagcttttatggaagctttaacaatttatggact 223 |||| |||||| |||||||| ||||||| ||||||||||||| |||||||| Sbjct: 56056 gtacgttattgtttagtctaatttttatgaaagctttaacaatatatggact 56107
>emb|X64731.1|CHPLATPIH P.lutherii chloroplast DNA of atpI and atpH genes for subunit of ATPase complex Length = 465 Score = 56.0 bits (28), Expect = 1e-04 Identities = 85/104 (81%) Strand = Plus / Plus Query: 102 caaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcagaaggt 161 ||||||| ||||| || |||||| ||||||||||||| | || ||||| || |||||| Sbjct: 239 caaggtagcgctgctggtcaagctttagaaggtattgctcgtcaaccagaggctgaaggt 298 Query: 162 aaaatacgaggtactttattgcttagtctagcttttatggaagc 205 || || ||||||||| || | || |||||||||||||||||| Sbjct: 299 aagattcgaggtactctacttctatctctagcttttatggaagc 342
>gb|AC009749.9| Drosophila melanogaster clone BACR40I04, complete sequence Length = 161276 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 35 tgctgctgcttctgttattgctgctg 60 |||||||||||||||||||||||||| Sbjct: 119243 tgctgctgcttctgttattgctgctg 119268
>gb|AE003575.5| Drosophila melanogaster chromosome 2L, section 16 of 83 of the complete sequence Length = 330399 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 35 tgctgctgcttctgttattgctgctg 60 |||||||||||||||||||||||||| Sbjct: 280823 tgctgctgcttctgttattgctgctg 280798
>gb|M16844.1|EGRCPATPH E.gracilis chloroplast ATP synthase proton-translocating subunit (atpH) gene, complete cds Length = 581 Score = 52.0 bits (26), Expect = 0.002 Identities = 95/118 (80%) Strand = Plus / Plus Query: 150 gaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttatggaagcttta 209 |||||||||| ||||||| |||| |||||||| | | ||||||| |||||||| ||| Sbjct: 416 gaagcagaagataaaataagaggaactttattattatctttagctttcatggaagcatta 475 Query: 210 acaatttatggactagttgtggcactagcgcttttatttgcgaacccttttgtttaat 267 || || |||||| |||| || || |||| | |||||||||| ||||||||||||| Sbjct: 476 actatatatggattagtagttgctttagctataatatttgcgaatccttttgtttaat 533
>emb|X53275.1|DMBIBGENE D.melanogaster RNA for big brain neurogenic gene Length = 3315 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Minus Query: 35 tgctgctgcttctgttattgctgctggattggc 67 |||||||||| ||||| |||||||||||||||| Sbjct: 1799 tgctgctgctgctgttgttgctgctggattggc 1767
>emb|X70431.1|S6716ATPS Synechococcus 6716 gene for ATP synthase alpha and delta, subunits a,c,b',b Length = 7581 Score = 48.1 bits (24), Expect = 0.031 Identities = 48/56 (85%) Strand = Plus / Plus Query: 120 caagctgtagaaggtattgcgagacagccagaagcagaaggtaaaatacgaggtac 175 ||||| || |||||||||||| | || |||||||| ||||||||||| || ||||| Sbjct: 3822 caagccgttgaaggtattgcgcggcaaccagaagcggaaggtaaaattcggggtac 3877
>tpg|BK000554.2| TPA: TPA_inf: Chlamydomonas reinhardtii chloroplast, complete genome Length = 203828 Score = 48.1 bits (24), Expect = 0.031 Identities = 117/148 (79%) Strand = Plus / Plus Query: 82 ctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgcga 141 ||||||| ||||| | ||||||||||||||||| || | || || ||||||||||| Sbjct: 129010 ctattggtcctggtatgggtcaaggtactgctgctggttatgcagttgaaggtattgctc 129069 Query: 142 gacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttatgg 201 | || || ||||| ||||||||||| || ||| | | || | ||| | ||||| |||| Sbjct: 129070 gtcaacctgaagctgaaggtaaaatccgtggtgcgcttttattaagtttcgctttcatgg 129129 Query: 202 aagctttaacaatttatggactagttgt 229 || ||||||||||||| || |||||||| Sbjct: 129130 aatctttaacaatttacggtctagttgt 129157
>emb|X90559.1|CRYCFATPH C.reinhardtii chloroplast DNA for ycf10 and atpH genes Length = 2281 Score = 48.1 bits (24), Expect = 0.031 Identities = 117/148 (79%) Strand = Plus / Plus Query: 82 ctattggacctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgcga 141 ||||||| ||||| | ||||||||||||||||| || | || || ||||||||||| Sbjct: 2072 ctattggtcctggtatgggtcaaggtactgctgctggttatgcagttgaaggtattgctc 2131 Query: 142 gacagccagaagcagaaggtaaaatacgaggtactttattgcttagtctagcttttatgg 201 | || || ||||| ||||||||||| || ||| | | || | ||| | ||||| |||| Sbjct: 2132 gtcaacctgaagctgaaggtaaaatccgtggtgcgcttttattaagtttcgctttcatgg 2191 Query: 202 aagctttaacaatttatggactagttgt 229 || ||||||||||||| || |||||||| Sbjct: 2192 aatctttaacaatttacggtctagttgt 2219
>gb|DQ215873.1| Taeniopygia guttata clone 0061P0006E09 heat shock protein 25-like mRNA, complete sequence Length = 860 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 35 tgctgctgcttctgttattgctgctg 60 |||||||||| ||||||||||||||| Sbjct: 77 tgctgctgctgctgttattgctgctg 52
>ref|NM_002704.2| Homo sapiens pro-platelet basic protein (chemokine (C-X-C motif) ligand 7) (PPBP), mRNA Length = 715 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 35 tgctgctgcttctgttattgctgctg 60 ||||||||||||||| |||||||||| Sbjct: 145 tgctgctgcttctgtcattgctgctg 170
>gb|BC077350.1| Xenopus laevis MGC81192 protein, mRNA (cDNA clone MGC:81192 IMAGE:6318409), complete cds Length = 4474 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 35 tgctgctgcttctgttattgctgctg 60 |||||||||||||||| ||||||||| Sbjct: 1615 tgctgctgcttctgttgttgctgctg 1590
>gb|AC185956.1| Populus trichocarpa clone Pop1-93N08, complete sequence Length = 73786 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 509 ggaaagttttttccttttattttagg 534 ||||||| |||||||||||||||||| Sbjct: 32423 ggaaagtgttttccttttattttagg 32398
>emb|AL583855.10| Human DNA sequence from clone RP11-16P15 on chromosome 10 Contains the 5' end of the MBL2 gene for mannose-binding lectin (protein C) 2 soluble (opsonic defect), complete sequence Length = 8604 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 499 ttaggaaagtggaaagtttttt 520 |||||||||||||||||||||| Sbjct: 4989 ttaggaaagtggaaagtttttt 4968
>gb|BC028217.1| Homo sapiens pro-platelet basic protein (chemokine (C-X-C motif) ligand 7), mRNA (cDNA clone MGC:40008 IMAGE:5214257), complete cds Length = 703 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 35 tgctgctgcttctgttattgctgctg 60 ||||||||||||||| |||||||||| Sbjct: 131 tgctgctgcttctgtcattgctgctg 156
>gb|AC087588.10| Homo sapiens 12 BAC RP11-8P13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 146167 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 352 atatcaatactttatttaattt 373 |||||||||||||||||||||| Sbjct: 44729 atatcaatactttatttaattt 44750
>emb|CR456805.1| Homo sapiens full open reading frame cDNA clone RZPDo834A1015D for gene PPBP, pro-platelet basic protein (chemokine (C-X-C motif) ligand 7); complete cds, incl. stopcodon Length = 387 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 35 tgctgctgcttctgttattgctgctg 60 ||||||||||||||| |||||||||| Sbjct: 65 tgctgctgcttctgtcattgctgctg 90
>gb|AF349466.1|AF349466 Homo sapiens neutrophil-activating peptide ENA-78, platelet basic protein, and platelet factor 4 genes, complete cds Length = 53374 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 35 tgctgctgcttctgttattgctgctg 60 ||||||||||||||| |||||||||| Sbjct: 25879 tgctgctgcttctgtcattgctgctg 25904
>gb|AC097709.3| Homo sapiens BAC clone RP11-19B4 from 4, complete sequence Length = 160741 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 35 tgctgctgcttctgttattgctgctg 60 ||||||||||||||| |||||||||| Sbjct: 73988 tgctgctgcttctgtcattgctgctg 73963
>gb|AC124290.5| Homo sapiens chromosome 8, clone RP11-89M20, complete sequence Length = 198642 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 ttgctgctgcttctgttattgc 55 |||||||||||||||||||||| Sbjct: 18832 ttgctgctgcttctgttattgc 18853
>gb|AC124073.9| Homo sapiens chromosome 8, clone RP11-593P24, complete sequence Length = 185250 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 ttgctgctgcttctgttattgc 55 |||||||||||||||||||||| Sbjct: 67625 ttgctgctgcttctgttattgc 67604
>emb|BX469928.8| Zebrafish DNA sequence from clone DKEYP-47C5 in linkage group 22, complete sequence Length = 141594 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 101 tcaaggtactgctgcaggacaa 122 |||||||||||||||||||||| Sbjct: 101570 tcaaggtactgctgcaggacaa 101591
>dbj|AP006244.1| Homo sapiens genomic DNA, chromosome 8, clone:RP11-108H17, complete sequence Length = 169401 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 ttgctgctgcttctgttattgc 55 |||||||||||||||||||||| Sbjct: 79999 ttgctgctgcttctgttattgc 79978
>gb|M54995.1|HUMCTAP3 Human connective tissue activation peptide III mRNA, complete cds Length = 673 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 35 tgctgctgcttctgttattgctgctg 60 ||||||||||||||| |||||||||| Sbjct: 131 tgctgctgcttctgtcattgctgctg 156
>dbj|AP000081.1| Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene region, section 17/19, complete sequence Length = 100000 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 ttgctgctgcttctgttattgc 55 |||||||||||||||||||||| Sbjct: 71260 ttgctgctgcttctgttattgc 71281
>gb|AY835656.1| Liparis mucosus 16S ribosomal RNA gene, partial sequence; mitochondrial Length = 482 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 514 gttttttccttttattttagg 534 ||||||||||||||||||||| Sbjct: 211 gttttttccttttattttagg 191
>gb|U64857.2| Caenorhabditis elegans cosmid C37C3, complete sequence Length = 42522 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 ctgcttctgttattgctgctg 60 ||||||||||||||||||||| Sbjct: 12113 ctgcttctgttattgctgctg 12093
>gb|AC008365.4| Drosophila melanogaster clone BACR03N12, complete sequence Length = 166693 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 32 aattgctgctgcttctgttattgctgctg 60 ||||||||||| ||||||| ||||||||| Sbjct: 137173 aattgctgctgattctgttgttgctgctg 137201
>gb|AC009744.8| Drosophila melanogaster clone BACR06G16, complete sequence Length = 179038 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 35 tgctgctgcttctgttattgctgctggattggc 67 |||||||||| |||| |||||||||||||||| Sbjct: 102975 tgctgctgctgttgttgttgctgctggattggc 102943
>gb|AY581239.1| Zizania aquatica atpI-atpH intergenic spacer, partial sequence; and AtpH (atpH) gene, partial cds; chloroplast Length = 77 Score = 42.1 bits (21), Expect = 1.9 Identities = 31/33 (93%), Gaps = 1/33 (3%) Strand = Plus / Plus Query: 15 actcaccatgaatcc-ctaattgctgctgcttc 46 ||||| ||||||||| ||||||||||||||||| Sbjct: 45 actcatcatgaatccactaattgctgctgcttc 77
>gb|AY581238.1| Streptochaeta angustifolia atpI-atpH intergenic spacer, partial sequence; and AtpH (atpH) gene, partial cds; chloroplast Length = 77 Score = 42.1 bits (21), Expect = 1.9 Identities = 31/33 (93%), Gaps = 1/33 (3%) Strand = Plus / Plus Query: 15 actcaccatgaatcc-ctaattgctgctgcttc 46 ||||| ||||||||| ||||||||||||||||| Sbjct: 45 actcatcatgaatccactaattgctgctgcttc 77
>gb|AY581237.1| Sorghum bicolor atpI-atpH intergenic spacer, partial sequence; and AtpH (atpH) gene, partial cds; chloroplast Length = 77 Score = 42.1 bits (21), Expect = 1.9 Identities = 31/33 (93%), Gaps = 1/33 (3%) Strand = Plus / Plus Query: 15 actcaccatgaatcc-ctaattgctgctgcttc 46 ||||| ||||||||| ||||||||||||||||| Sbjct: 45 actcatcatgaatccactaattgctgctgcttc 77
>gb|AY581235.1| Danthonia spicata atpI-atpH intergenic spacer, partial sequence; and AtpH (atpH) gene, partial cds; chloroplast Length = 78 Score = 42.1 bits (21), Expect = 1.9 Identities = 31/33 (93%), Gaps = 1/33 (3%) Strand = Plus / Plus Query: 15 actcaccatgaatcc-ctaattgctgctgcttc 46 ||||| ||||||||| ||||||||||||||||| Sbjct: 46 actcatcatgaatccactaattgctgctgcttc 78
>gb|AY581234.1| Chasmanthium latifolium atpI-atpH intergenic spacer, partial sequence; and AtpH (atpH) gene, partial cds; chloroplast Length = 78 Score = 42.1 bits (21), Expect = 1.9 Identities = 31/33 (93%), Gaps = 1/33 (3%) Strand = Plus / Plus Query: 15 actcaccatgaatcc-ctaattgctgctgcttc 46 ||||| ||||||||| ||||||||||||||||| Sbjct: 46 actcatcatgaatccactaattgctgctgcttc 78
>gb|AY581233.1| Bouteloua gracilis atpI-atpH intergenic spacer, partial sequence; and AtpH (atpH) gene, partial cds; chloroplast Length = 77 Score = 42.1 bits (21), Expect = 1.9 Identities = 31/33 (93%), Gaps = 1/33 (3%) Strand = Plus / Plus Query: 15 actcaccatgaatcc-ctaattgctgctgcttc 46 ||||| ||||||||| ||||||||||||||||| Sbjct: 45 actcatcatgaatccactaattgctgctgcttc 77
>gb|AC164098.4| Mus musculus BAC clone RP23-341D24 from chromosome 1, complete sequence Length = 221754 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 362 tttatttaatttactcctatttatt 386 ||||||||||||| ||||||||||| Sbjct: 75532 tttatttaatttattcctatttatt 75556
>gb|AC161930.7| Mus musculus chromosome 7, clone RP23-157P17, complete sequence Length = 212109 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 34 ttgctgctgcttctgttattgctgc 58 ||||||||||| ||||||||||||| Sbjct: 79066 ttgctgctgctcctgttattgctgc 79042
>emb|BX088723.4| Human DNA sequence from clone RP11-52E20 on chromosome X, complete sequence Length = 146782 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 515 ttttttccttttattttagga 535 ||||||||||||||||||||| Sbjct: 7278 ttttttccttttattttagga 7258
>emb|AL590072.7| Human DNA sequence from clone RP11-154J12 on chromosome 10, complete sequence Length = 112445 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 453 gattaatttagaagatatgct 473 ||||||||||||||||||||| Sbjct: 62625 gattaatttagaagatatgct 62605
>emb|AL162582.30| Human DNA sequence from clone RP1-276N6 on chromosome 6 Contains the 5' end of the SLC22A2 gene for solute carrier family 22 (organic cation transporter), member 2 (OCT2) and a novel gene, complete sequence Length = 85786 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 34 ttgctgctgcttctgttattgctgc 58 ||||||||||| ||||||||||||| Sbjct: 24416 ttgctgctgctgctgttattgctgc 24392
>emb|X64412.1|DMORBR D.melanogaster orb mRNA Length = 4742 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 32 aattgctgctgcttctgttattgctgctg 60 ||||||||||| ||||||| ||||||||| Sbjct: 1975 aattgctgctgattctgttgttgctgctg 1947
>gb|AC091531.9| Mus musculus Strain C57BL6/J Chromosome 9 RP23-283E4, complete sequence Length = 178084 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 173 tactttattgcttagtctagc 193 ||||||||||||||||||||| Sbjct: 168977 tactttattgcttagtctagc 168997
>ref|NM_170065.2| Drosophila melanogaster oo18 RNA-binding protein CG10868-RE, transcript variant E (orb), mRNA Length = 1964 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 32 aattgctgctgcttctgttattgctgctg 60 ||||||||||| ||||||| ||||||||| Sbjct: 196 aattgctgctgattctgttgttgctgctg 168
>ref|NM_170064.1| Drosophila melanogaster oo18 RNA-binding protein CG10868-RC, transcript variant C (orb), mRNA Length = 2962 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 32 aattgctgctgcttctgttattgctgctg 60 ||||||||||| ||||||| ||||||||| Sbjct: 196 aattgctgctgattctgttgttgctgctg 168
>ref|NM_170063.2| Drosophila melanogaster oo18 RNA-binding protein CG10868-RD, transcript variant D (orb), mRNA Length = 3258 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 32 aattgctgctgcttctgttattgctgctg 60 ||||||||||| ||||||| ||||||||| Sbjct: 1490 aattgctgctgattctgttgttgctgctg 1462
>ref|NM_170062.1| Drosophila melanogaster oo18 RNA-binding protein CG10868-RB, transcript variant B (orb), mRNA Length = 4256 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 32 aattgctgctgcttctgttattgctgctg 60 ||||||||||| ||||||| ||||||||| Sbjct: 1490 aattgctgctgattctgttgttgctgctg 1462
>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 Length = 2324132 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 35 tgctgctgcttctgttattgctgctggat 63 |||||||||| ||||| |||||||||||| Sbjct: 834736 tgctgctgctgctgttgttgctgctggat 834708
>gb|AC108937.4| Homo sapiens BAC clone RP11-679I19 from 4, complete sequence Length = 105033 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 34 ttgctgctgcttctgttattg 54 ||||||||||||||||||||| Sbjct: 29354 ttgctgctgcttctgttattg 29374
>ref|NM_079736.2| Drosophila melanogaster oo18 RNA-binding protein CG10868-RA, transcript variant A (orb), mRNA Length = 4860 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 32 aattgctgctgcttctgttattgctgctg 60 ||||||||||| ||||||| ||||||||| Sbjct: 2094 aattgctgctgattctgttgttgctgctg 2066
>ref|NM_057489.3| Drosophila melanogaster big brain CG4722-RA (bib), mRNA Length = 3281 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 35 tgctgctgcttctgttattgctgctggattggc 67 |||||||||| |||| |||||||||||||||| Sbjct: 1802 tgctgctgctgttgttgttgctgctggattggc 1770
>dbj|AK132395.1| Mus musculus 1 day pregnant adult female mammary gland cDNA, RIKEN full-length enriched library, clone:4222403J03 product:procollagen C-endopeptidase enhancer 2, full insert sequence Length = 4303 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 tactttattgcttagtctagc 193 ||||||||||||||||||||| Sbjct: 2205 tactttattgcttagtctagc 2185
>gb|AY075390.1| Drosophila melanogaster LD25781 full length cDNA Length = 2592 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 32 aattgctgctgcttctgttattgctgctg 60 ||||||||||| ||||||| ||||||||| Sbjct: 2080 aattgctgctgattctgttgttgctgctg 2052
>gb|AY051981.1| Drosophila melanogaster LD45157 full length cDNA Length = 3274 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 35 tgctgctgcttctgttattgctgctggattggc 67 |||||||||| |||| |||||||||||||||| Sbjct: 1784 tgctgctgctgttgttgttgctgctggattggc 1752
>ref|NM_182390.3| Caenorhabditis elegans C37C3.12 (C37C3.12) mRNA, complete cds Length = 603 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 40 ctgcttctgttattgctgctg 60 ||||||||||||||||||||| Sbjct: 316 ctgcttctgttattgctgctg 336
>gb|AC010670.8|AC010670 Drosophila melanogaster, chromosome 3R, region 94E-95A, BAC clone BACR01E13, complete sequence Length = 155957 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 32 aattgctgctgcttctgttattgctgctg 60 ||||||||||| ||||||| ||||||||| Sbjct: 44144 aattgctgctgattctgttgttgctgctg 44172
>gb|AC157947.2| Mus musculus BAC clone RP23-238L21 from chromosome 9, complete sequence Length = 174016 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 173 tactttattgcttagtctagc 193 ||||||||||||||||||||| Sbjct: 50954 tactttattgcttagtctagc 50974
>gb|AC010127.12| Homo sapiens BAC clone RP11-2I8 from 2, complete sequence Length = 190066 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 519 ttccttttattttaggaattt 539 ||||||||||||||||||||| Sbjct: 128348 ttccttttattttaggaattt 128328
>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome Length = 2593857 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 147 ccagaagcagaaggtaaaatacgaggtac 175 |||||||||||||||||||| || ||||| Sbjct: 428028 ccagaagcagaaggtaaaattcgcggtac 428056
>gb|AE003742.4| Drosophila melanogaster chromosome 3R, section 80 of 118 of the complete sequence Length = 233746 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 32 aattgctgctgcttctgttattgctgctg 60 ||||||||||| ||||||| ||||||||| Sbjct: 154099 aattgctgctgattctgttgttgctgctg 154127
>gb|AE003627.4| Drosophila melanogaster chromosome 2L, section 36 of 83 of the complete sequence Length = 264225 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 35 tgctgctgcttctgttattgctgctggattggc 67 |||||||||| |||| |||||||||||||||| Sbjct: 20346 tgctgctgctgttgttgttgctgctggattggc 20314
>gb|AC005464.1|AC005464 Drosophila melanogaster, chromosome 2R, region 31A1-31A2, P1 clone DS01825, complete sequence Length = 57000 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 35 tgctgctgcttctgttattgctgctggattggc 67 |||||||||| |||| |||||||||||||||| Sbjct: 15359 tgctgctgctgttgttgttgctgctggattggc 15327
>gb|BT001315.1| Drosophila melanogaster AT14906 full insert cDNA Length = 3101 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 32 aattgctgctgcttctgttattgctgctg 60 ||||||||||| ||||||| ||||||||| Sbjct: 1326 aattgctgctgattctgttgttgctgctg 1298
>gb|BT001292.1| Drosophila melanogaster AT10134 full insert cDNA Length = 1967 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 32 aattgctgctgcttctgttattgctgctg 60 ||||||||||| ||||||| ||||||||| Sbjct: 194 aattgctgctgattctgttgttgctgctg 166
>gb|AY539045.2| Liparis mucosus 16S large subunit ribosomal RNA gene, partial sequence; mitochondrial Length = 542 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 514 gttttttccttttattttagg 534 ||||||||||||||||||||| Sbjct: 259 gttttttccttttattttagg 239
>gb|AC133166.2| Mus musculus BAC clone RP24-186D13 from 1, complete sequence Length = 158206 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 362 tttatttaatttactcctatttatt 386 ||||||||||||| ||||||||||| Sbjct: 151252 tttatttaatttattcctatttatt 151276
>emb|X15359.1|DVHB Drosophila virilis hunchback (hb) gene for zinc-finger protein transcription factor Length = 8807 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 32 aattgctgctgcttctgttattgctgctg 60 ||||||||||||| ||||| ||||||||| Sbjct: 7322 aattgctgctgctgctgttgttgctgctg 7294
>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome Length = 1709204 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 33 attgctgctgcttctgttattgctgctg 60 |||||||||||| ||||| ||||||||| Sbjct: 327994 attgctgctgctgctgttgttgctgctg 328021
>ref|XM_508919.1| PREDICTED: Pan troglodytes similar to protein kinase, lysine deficient 1; kinase deficient protein (LOC451739), mRNA Length = 8912 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 35 tgctgctgcttctgttattgctgctgga 62 |||| |||||||||| |||||||||||| Sbjct: 6933 tgctcctgcttctgtaattgctgctgga 6906
>ref|XM_519619.1| PREDICTED: Pan troglodytes similar to platelet-derived growth factor receptor-like protein; platelet-derived growth factor-beta-like tumor suppressor (LOC464010), mRNA Length = 1890 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 524 tttattttaggaattttggg 543 |||||||||||||||||||| Sbjct: 1037 tttattttaggaattttggg 1018
>gb|U73916.1|LUU73916 Linum usitatissimum rust resistance protein M gene, complete cds Length = 6050 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 agttttttccttttatttta 532 |||||||||||||||||||| Sbjct: 4701 agttttttccttttatttta 4720
>gb|L08502.1|DROABSNTI Drosophila melanogaster developmental protein eya II (eyes absent (eya)) mRNA, complete cds Length = 3065 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 33 attgctgctgcttctgttattgctgctg 60 |||||||||||| ||||| ||||||||| Sbjct: 416 attgctgctgctgctgttgttgctgctg 389
>gb|AC011249.7| Drosophila melanogaster clone BACR37F23, complete sequence Length = 164973 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 33 attgctgctgcttctgttattgctgctg 60 |||||||||||| ||||| ||||||||| Sbjct: 30914 attgctgctgctgctgttgttgctgctg 30887
>gb|AC150284.1| Latimeria menadoensis clone VMRC4-44H8, complete sequence Length = 187607 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 505 aagtggaaagttttttcctt 524 |||||||||||||||||||| Sbjct: 109144 aagtggaaagttttttcctt 109163
>gb|AC150283.1| Latimeria menadoensis clone VMRC4-188C23, complete sequence Length = 171414 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 505 aagtggaaagttttttcctt 524 |||||||||||||||||||| Sbjct: 126640 aagtggaaagttttttcctt 126659
>gb|AC132681.5| Mus musculus BAC clone RP23-442K13 from chromosome 3, complete sequence Length = 190938 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 caattatatcaatactttat 366 |||||||||||||||||||| Sbjct: 59264 caattatatcaatactttat 59283
>gb|AC133464.11| Mus musculus chromosome 16, clone RP24-459O21, complete sequence Length = 142742 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 34 ttgctgctgcttctgttattgctg 57 |||||||||||| ||||||||||| Sbjct: 123608 ttgctgctgcttttgttattgctg 123585
>gb|AC129574.8| Mus musculus chromosome 16, clone RP23-78C2, complete sequence Length = 214649 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 34 ttgctgctgcttctgttattgctg 57 |||||||||||| ||||||||||| Sbjct: 26225 ttgctgctgcttttgttattgctg 26202
>gb|L08501.1|DRONOEYE Drosophila melanogaster eyes absent I (eyaI) mRNA, complete cds Length = 3231 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 33 attgctgctgcttctgttattgctgctg 60 |||||||||||| ||||| ||||||||| Sbjct: 582 attgctgctgctgctgttgttgctgctg 555
>gb|AC141638.3| Mus musculus BAC clone RP23-415K1 from chromosome 7, complete sequence Length = 190553 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 tgctgctgcttctgttattg 54 |||||||||||||||||||| Sbjct: 42997 tgctgctgcttctgttattg 42978
>gb|BC109657.1| Bos taurus golgi SNAP receptor complex member 1, mRNA (cDNA clone MGC:133734 IMAGE:8052166), complete cds Length = 1212 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 agttttttccttttatttta 532 |||||||||||||||||||| Sbjct: 1176 agttttttccttttatttta 1195
>gb|AC182655.2| Populus trichocarpa clone Pop1-121O5, complete sequence Length = 87839 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 509 ggaaagttttttccttttatttta 532 ||||||| |||||||||||||||| Sbjct: 29164 ggaaagtattttccttttatttta 29187
>ref|NM_001038525.1| Bos taurus golgi SNAP receptor complex member 1 (GOSR1), mRNA Length = 1212 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 agttttttccttttatttta 532 |||||||||||||||||||| Sbjct: 1176 agttttttccttttatttta 1195
>ref|XM_546222.2| PREDICTED: Canis familiaris hypothetical LOC489106 (LOC489106), mRNA Length = 3238 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 33 attgctgctgcttctgttattgct 56 |||||||||||| ||||||||||| Sbjct: 957 attgctgctgctactgttattgct 934
>gb|AC109594.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0007P22, complete sequence Length = 148068 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 517 ttttccttttattttaggaa 536 |||||||||||||||||||| Sbjct: 99882 ttttccttttattttaggaa 99901
>emb|AL606495.6| Human DNA sequence from clone RP11-7G12 on chromosome 1 Contains a ribosomal protein S3A (RPS3A) pseudogene, complete sequence Length = 120964 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 35 tgctgctgcttctgttattgctgc 58 ||||||||||| |||||||||||| Sbjct: 67582 tgctgctgcttatgttattgctgc 67559
>emb|AL596266.3| Human DNA sequence from clone RP11-2L13 on chromosome 1 Contains a translational inhibitor protein p14.5 (UK114) pseudogene, complete sequence Length = 128479 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 aattccaattatatcaatac 361 |||||||||||||||||||| Sbjct: 20242 aattccaattatatcaatac 20223
>emb|AL353802.14| Human DNA sequence from clone RP4-662P1 on chromosome 1p31.3-32.3 Contains part of the gene for InaD-like protein (INADL), complete sequence Length = 143226 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 517 ttttccttttattttaggaa 536 |||||||||||||||||||| Sbjct: 60817 ttttccttttattttaggaa 60836
>emb|AL353811.12| Human DNA sequence from clone RP11-482I10 on chromosome 9, complete sequence Length = 190651 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 ccaattatatcaatacttta 365 |||||||||||||||||||| Sbjct: 31818 ccaattatatcaatacttta 31799
>emb|AL139340.12| Human DNA sequence from clone RP11-7F3 on chromosome 10, complete sequence Length = 187316 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 517 ttttccttttattttaggaatttt 540 |||||||||||||||||| ||||| Sbjct: 85044 ttttccttttattttagggatttt 85021
>emb|AL121979.13|HSJ521A22 Human DNA sequence from clone RP3-521A22 on chromosome 6, complete sequence Length = 21393 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 acagccagaagcagaaggta 162 |||||||||||||||||||| Sbjct: 5256 acagccagaagcagaaggta 5275
>emb|AL022319.2|HS172B20 Human DNA sequence from clone RP1-172B20 on chromosome 22q12.3-13.1 Contains the 3' part of the CACNA1I gene for voltage-dependent calcium channel, alpha 1I subunit, ESTs, STSs, GSSs and a putative CpG island, complete sequence Length = 213721 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 508 tggaaagttttttccttttattttagga 535 ||||||||||||| ||||||||| |||| Sbjct: 178278 tggaaagtttttttcttttatttcagga 178305
>gb|AC155933.3| Mus musculus BAC clone RP23-89K6 from chromosome 7, complete sequence Length = 265770 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 tgctgctgcttctgttattg 54 |||||||||||||||||||| Sbjct: 24208 tgctgctgcttctgttattg 24227
>dbj|AB220466.1| Macaca fascicularis mRNA, clone QflA-15761: similar to Homo sapiens platelet-derived growth factor receptor-like (PDGFRL), mRNA, NM_006207.1 Length = 2250 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 524 tttattttaggaattttggg 543 |||||||||||||||||||| Sbjct: 180 tttattttaggaattttggg 161
>gb|AC099782.2| Homo sapiens chromosome 3 clone RP11-852E15, complete sequence Length = 209772 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 514 gttttttccttttattttag 533 |||||||||||||||||||| Sbjct: 78655 gttttttccttttattttag 78636
>dbj|AP000379.1| Homo sapiens genomic DNA, chromosome 9p21, proximal p16CDKN2A locus Length = 169261 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 ccaattatatcaatacttta 365 |||||||||||||||||||| Sbjct: 115439 ccaattatatcaatacttta 115420
>ref|NM_164693.1| Drosophila melanogaster CG9554-RA, transcript variant A (eya), mRNA Length = 3073 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 33 attgctgctgcttctgttattgctgctg 60 |||||||||||| ||||| ||||||||| Sbjct: 416 attgctgctgctgctgttgttgctgctg 389
>gb|AC006232.4| Arabidopsis thaliana chromosome 2 clone F10A12 map B68, complete sequence Length = 90341 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 517 ttttccttttattttaggaatttt 540 |||| ||||||||||||||||||| Sbjct: 65179 tttttcttttattttaggaatttt 65202
>ref|NM_078768.2| Drosophila melanogaster CG9554-RB, transcript variant B (eya), mRNA Length = 3314 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 33 attgctgctgcttctgttattgctgctg 60 |||||||||||| ||||| ||||||||| Sbjct: 657 attgctgctgctgctgttgttgctgctg 630
>gb|U76370.1|LUU76370 Linum usitatissimum mutant rust resistance protein M-X39 gene, partial cds Length = 2216 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 agttttttccttttatttta 532 |||||||||||||||||||| Sbjct: 867 agttttttccttttatttta 886
>emb|BX572078.5| Zebrafish DNA sequence from clone DKEY-77G12 in linkage group 14, complete sequence Length = 217034 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 tatatcaatactttatttaa 370 |||||||||||||||||||| Sbjct: 7093 tatatcaatactttatttaa 7112
>gb|AY047539.1| Drosophila melanogaster GH05272 full length cDNA Length = 3297 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 33 attgctgctgcttctgttattgctgctg 60 |||||||||||| ||||| ||||||||| Sbjct: 625 attgctgctgctgctgttgttgctgctg 598
>emb|BX511250.8| Zebrafish DNA sequence from clone CH211-57K11 in linkage group 16, complete sequence Length = 189081 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 516 tttttccttttattttaggaattt 539 ||||| |||||||||||||||||| Sbjct: 39797 tttttgcttttattttaggaattt 39774
>gb|AC092230.1|AC092230 Drosophila melanogaster, chromosome 2L, region 26F-27X, BAC clone BACR25K24, complete sequence Length = 174376 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 33 attgctgctgcttctgttattgctgctg 60 |||||||||||| ||||| ||||||||| Sbjct: 6702 attgctgctgctgctgttgttgctgctg 6729
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 517 ttttccttttattttaggaa 536 |||||||||||||||||||| Sbjct: 22352934 ttttccttttattttaggaa 22352915
>dbj|AB206707.1| Aplysia kurodai FaNaC mRNA for FMRFamide-gated Na+ channel, complete cds Length = 2352 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 34 ttgctgctgcttctgttattgctg 57 ||||||||| |||||||||||||| Sbjct: 185 ttgctgctgtttctgttattgctg 208
>gb|AC140918.1| Caenorhabditis briggsae cosmid CB020L07, complete sequence Length = 104788 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 515 ttttttccttttattttaggaatt 538 |||||||||||| ||||||||||| Sbjct: 74004 ttttttcctttttttttaggaatt 73981
>gb|AC147481.3| Medicago truncatula chromosome 2 BAC clone mth2-138b18, complete sequence Length = 128810 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 taacaatttatggactagtt 227 |||||||||||||||||||| Sbjct: 83828 taacaatttatggactagtt 83809
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 agacagccagaagcagaagg 160 |||||||||||||||||||| Sbjct: 2671583 agacagccagaagcagaagg 2671564
>dbj|AP007231.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0535F09 Length = 175050 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 33 attgctgctgcttctgttattgctgctg 60 |||||||||||| || |||||||||||| Sbjct: 151440 attgctgctgctacttttattgctgctg 151413
>dbj|AP003685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0548E04 Length = 138037 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 33 attgctgctgcttctgttattgctgctg 60 |||||||||||| || |||||||||||| Sbjct: 31700 attgctgctgctacttttattgctgctg 31673
>dbj|AK063523.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-H12, full insert sequence Length = 1430 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 33 attgctgctgcttctgttattgctgctg 60 |||||||||||| || |||||||||||| Sbjct: 1253 attgctgctgctacttttattgctgctg 1226
>gb|AE003614.4| Drosophila melanogaster chromosome 2L, section 23 of 83 of the complete sequence Length = 259718 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 33 attgctgctgcttctgttattgctgctg 60 |||||||||||| ||||| ||||||||| Sbjct: 33258 attgctgctgctgctgttgttgctgctg 33285
>gb|AY639959.1| Plasmodium coatneyi elongation factor Tu (TufA) gene, partial cds; apicoplast Length = 1154 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 363 ttatttaatttactcctatttatt 386 |||||||||||| ||||||||||| Sbjct: 602 ttatttaatttattcctatttatt 579
>gb|AC005669.1|AC005669 Homo sapiens chromosome 3, clone hRPK.165_I_16, complete sequence Length = 176968 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 514 gttttttccttttattttag 533 |||||||||||||||||||| Sbjct: 14111 gttttttccttttattttag 14130
>gb|AY609716.1| Sus scrofa clone Clu_27406.scr.msk.p1.Contig1, mRNA sequence Length = 2201 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 524 tttattttaggaattttggg 543 |||||||||||||||||||| Sbjct: 275 tttattttaggaattttggg 256
>ref|NM_131791.1| Danio rerio cryptochrome 2a (cry2a), mRNA Length = 1968 Score = 40.1 bits (20), Expect = 7.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 29 cctaattgctgctgcttctgttattgctgctg 60 |||||||||||||||| ||||| ||| ||||| Sbjct: 1721 cctaattgctgctgctgctgttgttgatgctg 1690
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 517 ttttccttttattttaggaa 536 |||||||||||||||||||| Sbjct: 22662845 ttttccttttattttaggaa 22662826 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,902,072 Number of Sequences: 3902068 Number of extensions: 5902072 Number of successful extensions: 142311 Number of sequences better than 10.0: 261 Number of HSP's better than 10.0 without gapping: 259 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 140911 Number of HSP's gapped (non-prelim): 1360 length of query: 554 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 531 effective length of database: 17,143,297,704 effective search space: 9103091080824 effective search space used: 9103091080824 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
