ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd12o18 |
|---|---|
| Clone Library Name | barley_pub |
>NAGAB_RAT (Q66H12) Alpha-N-acetylgalactosaminidase precursor (EC 3.2.1.49)| (Alpha-galactosidase B) Length = 415 Score = 31.2 bits (69), Expect = 1.0 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 8/60 (13%) Frame = +1 Query: 109 DGAYTDSYGFDNIDE-W-------GRPFPDLQRFPXSKGDKGFSQIASKXHEMGLKFGIH 264 DG Y + NID+ W GR PD +RFP G + +A H +GLK GI+ Sbjct: 65 DGWRDLGYVYLNIDDCWIGGRDATGRLIPDPKRFPH-----GIAFLADYAHSLGLKLGIY 119
>NAGAB_MOUSE (Q9QWR8) Alpha-N-acetylgalactosaminidase precursor (EC 3.2.1.49)| (Alpha-galactosidase B) Length = 415 Score = 31.2 bits (69), Expect = 1.0 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 8/60 (13%) Frame = +1 Query: 109 DGAYTDSYGFDNIDE-W-------GRPFPDLQRFPXSKGDKGFSQIASKXHEMGLKFGIH 264 DG Y + NID+ W GR PD +RFP G + +A H +GLK GI+ Sbjct: 65 DGWRDLGYVYLNIDDCWIGGRDASGRLIPDPKRFPH-----GIAFLADYAHSLGLKLGIY 119
>NAGAB_HUMAN (P17050) Alpha-N-acetylgalactosaminidase precursor (EC 3.2.1.49)| (Alpha-galactosidase B) Length = 411 Score = 31.2 bits (69), Expect = 1.0 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 8/64 (12%) Frame = +1 Query: 109 DGAYTDSYGFDNIDE-W-------GRPFPDLQRFPXSKGDKGFSQIASKXHEMGLKFGIH 264 DG Y + NID+ W GR PD +RFP G +A H +GLK GI+ Sbjct: 65 DGWRDMGYTYLNIDDCWIGGRDASGRLMPDPKRFPH-----GIPFLADYVHSLGLKLGIY 119 Query: 265 LMKG 276 G Sbjct: 120 ADMG 123
>AGAL_HUMAN (P06280) Alpha-galactosidase A precursor (EC 3.2.1.22) (Melibiase)| (Alpha-D-galactoside galactohydrolase) (Alpha-D-galactosidase A) (Agalsidase alfa) Length = 429 Score = 30.4 bits (67), Expect = 1.7 Identities = 20/48 (41%), Positives = 23/48 (47%) Frame = +1 Query: 148 DEWGRPFPDLQRFPXSKGDKGFSQIASKXHEMGLKFGIHLMKGISTQA 291 D GR D QRFP G Q+A+ H GLK GI+ G T A Sbjct: 101 DSEGRLQADPQRFPH-----GIRQLANYVHSKGLKLGIYADVGNKTCA 143
>PA22_NAJSG (P60044) Phospholipase A2 isoform 2 precursor (EC 3.1.1.4)| (Phosphatidylcholine 2-acylhydrolase) (Fragment) Length = 126 Score = 30.4 bits (67), Expect = 1.7 Identities = 15/41 (36%), Positives = 19/41 (46%) Frame = -1 Query: 178 GGRETVDPTHQCCQIHMNLYMPHQHTSGXTGNQ*RAYXYPC 56 G VD +CCQ+H N Y + SG + R Y Y C Sbjct: 39 GSGTPVDDLDRCCQVHDNCYNEAEKISG-CNPRFRTYSYEC 78
>PA21B_NAJSG (P60043) Phospholipase A2 isoform 1 precursor (EC 3.1.1.4)| (Phosphatidylcholine 2-acylhydrolase) (Fragment) Length = 126 Score = 29.6 bits (65), Expect = 2.9 Identities = 13/41 (31%), Positives = 18/41 (43%) Frame = -1 Query: 178 GGRETVDPTHQCCQIHMNLYMPHQHTSGXTGNQ*RAYXYPC 56 G +D +CCQ+H N Y + G Q + Y Y C Sbjct: 39 GSGTPIDDLDRCCQVHDNCYNSAREQGGCRPKQ-KTYSYEC 78
>IF5_CAEEL (Q22918) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 436 Score = 29.3 bits (64), Expect = 3.8 Identities = 17/53 (32%), Positives = 27/53 (50%) Frame = +1 Query: 214 SQIASKXHEMGLKFGIHLMKGISTQAVNANTPILDIETGKPYVENGRQWAGRD 372 + I SK G F I L +ST + N P +D++ K +NG++ +G D Sbjct: 114 NNIKSKCKACGCSFDIDLKHKLST-FIMKNPPKIDVDFSKAEQKNGKKTSGAD 165
>DXS_CHLMU (Q9PK62) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)| (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) Length = 632 Score = 29.3 bits (64), Expect = 3.8 Identities = 18/68 (26%), Positives = 24/68 (35%) Frame = +1 Query: 136 FDNIDEWGRPFPDLQRFPXSKGDKGFSQIASKXHEMGLKFGIHLMKGISTQAVNANTPIL 315 F I W R P R K + S H + +FGIH + + P L Sbjct: 203 FQKIHSWMRKIPGFSRQKSELLHKVDIALKSLSHPLFEQFGIHYVGPFDGHNIKKLIPAL 262 Query: 316 DIETGKPY 339 + G PY Sbjct: 263 EAVKGLPY 270
>NAGAB_BOVIN (Q58DH9) Alpha-N-acetylgalactosaminidase precursor (EC 3.2.1.49)| (Alpha-galactosidase B) Length = 411 Score = 29.3 bits (64), Expect = 3.8 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 8/60 (13%) Frame = +1 Query: 109 DGAYTDSYGFDNIDE-W-------GRPFPDLQRFPXSKGDKGFSQIASKXHEMGLKFGIH 264 DG Y + NID+ W G PD +RFP G + +A H +GLK GI+ Sbjct: 65 DGWRDLGYVYLNIDDCWIGGRDAKGNLVPDRKRFPH-----GIAFLADYAHSLGLKLGIY 119
>AGAL_MOUSE (P51569) Alpha-galactosidase A precursor (EC 3.2.1.22) (Melibiase)| (Alpha-D-galactoside galactohydrolase) (Alpha-D-galactosidase A) Length = 419 Score = 29.3 bits (64), Expect = 3.8 Identities = 19/48 (39%), Positives = 22/48 (45%) Frame = +1 Query: 148 DEWGRPFPDLQRFPXSKGDKGFSQIASKXHEMGLKFGIHLMKGISTQA 291 D GR D QRFP G +A+ H GLK GI+ G T A Sbjct: 101 DSKGRLQADPQRFPS-----GIKHLANYVHSKGLKLGIYADVGNKTCA 143
>PROA_OCEIH (Q8CUQ4) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 415 Score = 28.9 bits (63), Expect = 5.0 Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 10/119 (8%) Frame = +1 Query: 25 MQRFWQKSYYHMDXSMHVIDYLWXRRYVDGAYTDSYGFDNIDEWGRPFPDL--------- 177 ++R W+K Y + S+ ++D + S D+I+ +G + Sbjct: 303 VERDWEKEYLSSEISVKIVDSV------------SEAIDHINRYGTRHSEAIITENKMNA 350 Query: 178 QRFPXSKGDKGFSQIASKXHEMGLKFGIHLMKGISTQAVNANTPI-LDIETGKPYVENG 351 ++F AS G +FG GISTQ ++A P+ L+ T +V +G Sbjct: 351 EQFQLQVDAAAVYHNASTRFTDGFEFGYGAEIGISTQKLHARGPMGLEALTSTKFVISG 409
>PA22_OPHHA (Q9DF33) Phospholipase A2, acidic 2 precursor (EC 3.1.1.4)| (Phosphatidylcholine 2-acylhydrolase) (APLA2-2) Length = 146 Score = 28.9 bits (63), Expect = 5.0 Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Frame = -1 Query: 292 QPVYLFLSLNGCRISNPSHXPCWQFD*TLYHLWXMEIFGGRET-VDPTHQCCQIHMNLYM 116 QP++L R + P P W + + GG T VD +CCQ+H N Y Sbjct: 25 QPLHLVQFNGMIRCTIPGSIPWWDYSDYGCYCGS----GGSGTPVDELDRCCQVHDNCYT 80 Query: 115 PHQHTSGXTGNQ*RAYXYPC 56 Q + + + Y Y C Sbjct: 81 QAQQLTECSPYS-KRYSYDC 99
>PA23_NAJSG (P60045) Phospholipase A2 isoform 3 precursor (EC 3.1.1.4)| (Phosphatidylcholine 2-acylhydrolase) (Fragment) Length = 126 Score = 28.5 bits (62), Expect = 6.6 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = -1 Query: 178 GGRETVDPTHQCCQIHMNLYMPHQHTSGXTGNQ*RAYXYPC 56 G VD +CCQ+H N Y ++ SG + Y Y C Sbjct: 39 GSGTPVDDLDRCCQVHDNCYNEAENISG-CRPYFKTYSYEC 78
>PROA_PSEAE (Q9HX20) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 421 Score = 28.1 bits (61), Expect = 8.6 Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 4/109 (3%) Frame = +1 Query: 37 WQKSYYHMDXSMHVIDYLWXRRYVDGA--YTDSYGFDNIDEW-GRPFPDLQRFPXSKGDK 207 W+ Y S+ ++D L D A + ++YG + D F D +RF Sbjct: 313 WRTEYNAPILSIRIVDGL------DAAIEHINTYGSQHTDAIITENFSDARRFLAEVDSA 366 Query: 208 GFSQIASKXHEMGLKFGIHLMKGISTQAVNANTPI-LDIETGKPYVENG 351 AS G ++G+ GIST ++A P+ L+ T + YV G Sbjct: 367 SVMVNASTRFADGFEYGLGAEIGISTDKLHARGPVGLEGLTSEKYVVFG 415 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,963,298 Number of Sequences: 219361 Number of extensions: 1444020 Number of successful extensions: 3334 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3266 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3333 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
