ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd12o18 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_463296.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1923 Score = 359 bits (181), Expect = 5e-96 Identities = 343/397 (86%), Gaps = 1/397 (0%) Strand = Plus / Plus Query: 20 gcaaaatgcaaagattttggcagaaaagttactaccacatggatatnagtatgcacgtta 79 ||||||||| |||| ||||||||||| || || |||||||||||| ||| |||| |||| Sbjct: 456 gcaaaatgcggagatcttggcagaaaaattgctcccacatggatatgagtttgca-gtta 514 Query: 80 ttgattacctgtggnaccggaggtatgttgatggggcatatacagattcatatggatttg 139 |||||||||| ||| |||| | ||||||| |||||||||| ||||||||||||||||||| Sbjct: 515 ttgattacctctggtaccgaaagtatgttcatggggcatacacagattcatatggatttg 574 Query: 140 acaacattgatgagtggggtcgaccgtttcccgacctccaaagatttccatnatccaaag 199 | |||||||||||||||||||| || ||||| || || ||||||||||||| ||||| | Sbjct: 575 ataacattgatgagtggggtcggccatttcctgatcttcaaagatttccatcatccagaa 634 Query: 200 gtgataaagggttcagtcaaattgccagcaaggntcatgagatgggtttgaaattcggca 259 ||||||||||||||||||| |||| | ||||| |||| ||||| ||||||||||| | Sbjct: 635 ttgataaagggttcagtcaacttgcgaacaaggtgcatggaatgggcttgaaattcggaa 694 Query: 260 tccatttaatgaaaggaataagtacacaggctgttaatgcgaacacacccatcttggaca 319 |||||||||||||||| |||||| ||||||||| |||| ||||||||||| ||||||| Sbjct: 695 tccatttaatgaaagggataagtttacaggctgtgaatggaaacacacccatattggaca 754 Query: 320 ttgagacgggaaaaccctatgtagagaatggtcggcaatgggcaggtcgcgatattggcc 379 || | |||||||||||||| |||||| |||| ||||||||| ||| ||| ||||| || | Sbjct: 755 ttaaaacgggaaaaccctacgtagaggatggccggcaatggacagctcgtgatataggtc 814 Query: 380 tgacccataaaacatgtgcatggatgccacatggatt 416 | || |||| ||||||||||||||||||||||||||| Sbjct: 815 ttacacatagaacatgtgcatggatgccacatggatt 851
>dbj|AK067743.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116P20, full insert sequence Length = 2149 Score = 359 bits (181), Expect = 5e-96 Identities = 343/397 (86%), Gaps = 1/397 (0%) Strand = Plus / Plus Query: 20 gcaaaatgcaaagattttggcagaaaagttactaccacatggatatnagtatgcacgtta 79 ||||||||| |||| ||||||||||| || || |||||||||||| ||| |||| |||| Sbjct: 271 gcaaaatgcggagatcttggcagaaaaattgctcccacatggatatgagtttgca-gtta 329 Query: 80 ttgattacctgtggnaccggaggtatgttgatggggcatatacagattcatatggatttg 139 |||||||||| ||| |||| | ||||||| |||||||||| ||||||||||||||||||| Sbjct: 330 ttgattacctctggtaccgaaagtatgttcatggggcatacacagattcatatggatttg 389 Query: 140 acaacattgatgagtggggtcgaccgtttcccgacctccaaagatttccatnatccaaag 199 | |||||||||||||||||||| || ||||| || || ||||||||||||| ||||| | Sbjct: 390 ataacattgatgagtggggtcggccatttcctgatcttcaaagatttccatcatccagaa 449 Query: 200 gtgataaagggttcagtcaaattgccagcaaggntcatgagatgggtttgaaattcggca 259 ||||||||||||||||||| |||| | ||||| |||| ||||| ||||||||||| | Sbjct: 450 ttgataaagggttcagtcaacttgcgaacaaggtgcatggaatgggcttgaaattcggaa 509 Query: 260 tccatttaatgaaaggaataagtacacaggctgttaatgcgaacacacccatcttggaca 319 |||||||||||||||| |||||| ||||||||| |||| ||||||||||| ||||||| Sbjct: 510 tccatttaatgaaagggataagtttacaggctgtgaatggaaacacacccatattggaca 569 Query: 320 ttgagacgggaaaaccctatgtagagaatggtcggcaatgggcaggtcgcgatattggcc 379 || | |||||||||||||| |||||| |||| ||||||||| ||| ||| ||||| || | Sbjct: 570 ttaaaacgggaaaaccctacgtagaggatggccggcaatggacagctcgtgatataggtc 629 Query: 380 tgacccataaaacatgtgcatggatgccacatggatt 416 | || |||| ||||||||||||||||||||||||||| Sbjct: 630 ttacacatagaacatgtgcatggatgccacatggatt 666
>dbj|AK072383.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078M11, full insert sequence Length = 2268 Score = 351 bits (177), Expect = 1e-93 Identities = 342/397 (86%), Gaps = 1/397 (0%) Strand = Plus / Plus Query: 20 gcaaaatgcaaagattttggcagaaaagttactaccacatggatatnagtatgcacgtta 79 ||||||||| |||| ||||||||||| || || |||||||||||| ||| |||| |||| Sbjct: 249 gcaaaatgcggagatcttggcagaaaaattgctcccacatggatatgagtttgca-gtta 307 Query: 80 ttgattacctgtggnaccggaggtatgttgatggggcatatacagattcatatggatttg 139 |||||||||| ||| |||| | ||||||| |||||||||| ||||||||||||||||||| Sbjct: 308 ttgattacctctggtaccgaaagtatgttcatggggcatacacagattcatatggatttg 367 Query: 140 acaacattgatgagtggggtcgaccgtttcccgacctccaaagatttccatnatccaaag 199 | |||||||||||||||||||| || ||||| || || ||||||||||||| ||||| | Sbjct: 368 ataacattgatgagtggggtcggccatttcctgatcttcaaagatttccatcatccagaa 427 Query: 200 gtgataaagggttcagtcaaattgccagcaaggntcatgagatgggtttgaaattcggca 259 ||||||||||||||||||| |||| | ||||| |||| ||||| ||||||||||| | Sbjct: 428 ttgataaagggttcagtcaacttgcgaacaaggtgcatggaatgggcttgaaattcggaa 487 Query: 260 tccatttaatgaaaggaataagtacacaggctgttaatgcgaacacacccatcttggaca 319 ||||||||||| |||| |||||| ||||||||| |||| ||||||||||| ||||||| Sbjct: 488 tccatttaatggaagggataagtttacaggctgtgaatggaaacacacccatattggaca 547 Query: 320 ttgagacgggaaaaccctatgtagagaatggtcggcaatgggcaggtcgcgatattggcc 379 || | |||||||||||||| |||||| |||| ||||||||| ||| ||| ||||| || | Sbjct: 548 ttaaaacgggaaaaccctacgtagaggatggccggcaatggacagctcgtgatataggtc 607 Query: 380 tgacccataaaacatgtgcatggatgccacatggatt 416 | || |||| ||||||||||||||||||||||||||| Sbjct: 608 ttacacatagaacatgtgcatggatgccacatggatt 644
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 240 bits (121), Expect = 3e-60 Identities = 214/246 (86%) Strand = Plus / Minus Query: 76 gttattgattacctgtggnaccggaggtatgttgatggggcatatacagattcatatgga 135 |||||||||||||| ||| |||| | ||||||| |||||||||| ||||||||||||||| Sbjct: 18396582 gttattgattacctctggtaccgaaagtatgttcatggggcatacacagattcatatgga 18396523 Query: 136 tttgacaacattgatgagtggggtcgaccgtttcccgacctccaaagatttccatnatcc 195 ||||| |||||||||||||||||||| || ||||| || || ||||||||||||| |||| Sbjct: 18396522 tttgataacattgatgagtggggtcggccatttcctgatcttcaaagatttccatcatcc 18396463 Query: 196 aaaggtgataaagggttcagtcaaattgccagcaaggntcatgagatgggtttgaaattc 255 | | ||||||||||||||||||| |||| | ||||| |||| ||||| ||||||||| Sbjct: 18396462 agaattgataaagggttcagtcaacttgcgaacaaggtgcatggaatgggcttgaaattc 18396403 Query: 256 ggcatccatttaatgaaaggaataagtacacaggctgttaatgcgaacacacccatcttg 315 || ||||||||||||||||| |||||| ||||||||| |||| ||||||||||| ||| Sbjct: 18396402 ggaatccatttaatgaaagggataagtttacaggctgtgaatggaaacacacccatattg 18396343 Query: 316 gacatt 321 |||||| Sbjct: 18396342 gacatt 18396337 Score = 91.7 bits (46), Expect = 2e-15 Identities = 79/90 (87%) Strand = Plus / Minus Query: 327 gggaaaaccctatgtagagaatggtcggcaatgggcaggtcgcgatattggcctgaccca 386 |||||||||||| |||||| |||| ||||||||| ||| ||| ||||| || || || || Sbjct: 18394978 gggaaaaccctacgtagaggatggccggcaatggacagctcgtgatataggtcttacaca 18394919 Query: 387 taaaacatgtgcatggatgccacatggatt 416 || ||||||||||||||||||||||||||| Sbjct: 18394918 tagaacatgtgcatggatgccacatggatt 18394889 Score = 44.1 bits (22), Expect = 0.36 Identities = 40/46 (86%) Strand = Plus / Minus Query: 20 gcaaaatgcaaagattttggcagaaaagttactaccacatggatat 65 ||||||||| |||| ||||||||||| || || |||||||||||| Sbjct: 18396742 gcaaaatgcggagatcttggcagaaaaattgctcccacatggatat 18396697
>dbj|AP004222.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1003B09 Length = 155263 Score = 240 bits (121), Expect = 3e-60 Identities = 214/246 (86%) Strand = Plus / Minus Query: 76 gttattgattacctgtggnaccggaggtatgttgatggggcatatacagattcatatgga 135 |||||||||||||| ||| |||| | ||||||| |||||||||| ||||||||||||||| Sbjct: 20340 gttattgattacctctggtaccgaaagtatgttcatggggcatacacagattcatatgga 20281 Query: 136 tttgacaacattgatgagtggggtcgaccgtttcccgacctccaaagatttccatnatcc 195 ||||| |||||||||||||||||||| || ||||| || || ||||||||||||| |||| Sbjct: 20280 tttgataacattgatgagtggggtcggccatttcctgatcttcaaagatttccatcatcc 20221 Query: 196 aaaggtgataaagggttcagtcaaattgccagcaaggntcatgagatgggtttgaaattc 255 | | ||||||||||||||||||| |||| | ||||| |||| ||||| ||||||||| Sbjct: 20220 agaattgataaagggttcagtcaacttgcgaacaaggtgcatggaatgggcttgaaattc 20161 Query: 256 ggcatccatttaatgaaaggaataagtacacaggctgttaatgcgaacacacccatcttg 315 || ||||||||||||||||| |||||| ||||||||| |||| ||||||||||| ||| Sbjct: 20160 ggaatccatttaatgaaagggataagtttacaggctgtgaatggaaacacacccatattg 20101 Query: 316 gacatt 321 |||||| Sbjct: 20100 gacatt 20095 Score = 91.7 bits (46), Expect = 2e-15 Identities = 79/90 (87%) Strand = Plus / Minus Query: 327 gggaaaaccctatgtagagaatggtcggcaatgggcaggtcgcgatattggcctgaccca 386 |||||||||||| |||||| |||| ||||||||| ||| ||| ||||| || || || || Sbjct: 18736 gggaaaaccctacgtagaggatggccggcaatggacagctcgtgatataggtcttacaca 18677 Query: 387 taaaacatgtgcatggatgccacatggatt 416 || ||||||||||||||||||||||||||| Sbjct: 18676 tagaacatgtgcatggatgccacatggatt 18647 Score = 44.1 bits (22), Expect = 0.36 Identities = 40/46 (86%) Strand = Plus / Minus Query: 20 gcaaaatgcaaagattttggcagaaaagttactaccacatggatat 65 ||||||||| |||| ||||||||||| || || |||||||||||| Sbjct: 20500 gcaaaatgcggagatcttggcagaaaaattgctcccacatggatat 20455
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 382 acccataaaacatgtgcatgg 402 ||||||||||||||||||||| Sbjct: 23704887 acccataaaacatgtgcatgg 23704867
>gb|AC092390.3| Oryza sativa chromosome 3 BAC OSJNBb0013K08 genomic sequence, complete sequence Length = 120116 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 382 acccataaaacatgtgcatgg 402 ||||||||||||||||||||| Sbjct: 36941 acccataaaacatgtgcatgg 36921
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 382 acccataaaacatgtgcatgg 402 ||||||||||||||||||||| Sbjct: 23697915 acccataaaacatgtgcatgg 23697895
>gb|AC110541.12| Mus musculus chromosome 7, clone RP23-105F19, complete sequence Length = 213499 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 gatttgacaacattgatgag 153 |||||||||||||||||||| Sbjct: 129402 gatttgacaacattgatgag 129421
>emb|AL606587.3|OSJN00022 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011L07, complete sequence Length = 143585 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 tttaatgaaaggaataagta 283 |||||||||||||||||||| Sbjct: 78223 tttaatgaaaggaataagta 78242
>emb|AL845158.5| Mouse DNA sequence from clone RP23-147E6 on chromosome 4 Contains a component of oligomeric golgi complex 1 (Cog5) pseudogene and part of the Ptprd gene for receptor type protein tyrosine phosphatase D, complete sequence Length = 198523 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 atgagatgggtttgaaattc 255 |||||||||||||||||||| Sbjct: 154428 atgagatgggtttgaaattc 154447
>gb|AC009222.4| Homo sapiens chromosome 17, clone RP11-429O1, complete sequence Length = 184304 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 tgcaaagattttggcagaaa 45 |||||||||||||||||||| Sbjct: 58984 tgcaaagattttggcagaaa 59003
>gb|AC024918.5| Homo sapiens chromosome 17, clone RP11-254J21, complete sequence Length = 172784 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 tgcaaagattttggcagaaa 45 |||||||||||||||||||| Sbjct: 135947 tgcaaagattttggcagaaa 135966
>gb|AC097445.1| Drosophila melanogaster, chromosome 2R, region 43A-43B, BAC clone BACR12F04, complete sequence Length = 197994 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 tttggcagaaaagttactac 54 |||||||||||||||||||| Sbjct: 169629 tttggcagaaaagttactac 169648
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 tttaatgaaaggaataagta 283 |||||||||||||||||||| Sbjct: 27010522 tttaatgaaaggaataagta 27010541
>gb|AC104759.10| Homo sapiens chromosome 15, clone RP11-126F18, complete sequence Length = 173986 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 gagaatggtcggcaatgggc 362 |||||||||||||||||||| Sbjct: 126472 gagaatggtcggcaatgggc 126491
>gb|AC009342.5|AC009342 Drosophila melanogaster, chromosome 2R, region 42E-43A, BAC clone BACR29G01, complete sequence Length = 165855 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 tttggcagaaaagttactac 54 |||||||||||||||||||| Sbjct: 163328 tttggcagaaaagttactac 163309
>dbj|AK120355.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013066J01, full insert sequence Length = 5217 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 tttaatgaaaggaataagta 283 |||||||||||||||||||| Sbjct: 3998 tttaatgaaaggaataagta 3979
>gb|AE003842.4| Drosophila melanogaster chromosome 2R, section 8 of 73 of the complete sequence Length = 231065 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 tttggcagaaaagttactac 54 |||||||||||||||||||| Sbjct: 60447 tttggcagaaaagttactac 60428
>gb|AC006469.1|AC006469 Drosophila melanogaster, chromosome 2R, region 43A1-43A2, P1 clones DS02730 and DS07472, complete sequence Length = 89938 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 tttggcagaaaagttactac 54 |||||||||||||||||||| Sbjct: 6357 tttggcagaaaagttactac 6338 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,998,076 Number of Sequences: 3902068 Number of extensions: 2998076 Number of successful extensions: 54556 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54446 Number of HSP's gapped (non-prelim): 107 length of query: 418 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 396 effective length of database: 17,147,199,772 effective search space: 6790291109712 effective search space used: 6790291109712 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
