ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd13d17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY603974.1| Oryza sativa (indica cultivar-group) BTH-induced ... 226 6e-56
2dbj|AK072473.1| Oryza sativa (japonica cultivar-group) cDNA clon... 226 6e-56
3dbj|AK068957.1| Oryza sativa (japonica cultivar-group) cDNA clon... 226 6e-56
4gb|AY107898.1| Zea mays PCO065177 mRNA sequence 157 5e-35
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 103 6e-19
6gb|AC116604.1| Genomic sequence for Oryza sativa, Nipponbare str... 103 6e-19
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 103 6e-19
8dbj|AK100049.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 9e-09
9dbj|AK071987.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 9e-09
10ref|NM_196105.1| Oryza sativa (japonica cultivar-group) putative... 58 3e-05
11gb|AC113335.1| Genomic sequence for Oryza sativa (japonica culti... 58 3e-05
12dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
13gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 58 3e-05
14gb|AC119149.2| Oryza sativa (japonica cultivar-group) chromosome... 56 1e-04
15dbj|AK069957.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
16gb|AY432551.1| Aedes aegypti ASAP ID: 37027 unknown mRNA sequence 46 0.13
17emb|AL645702.14| Mouse DNA sequence from clone RP23-163J17 on ch... 42 2.0
18dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
19dbj|AP004745.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
20dbj|AP005470.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
21ref|NM_001031140.1| Gallus gallus polycystic kidney disease 2 (a... 40 8.0
22ref|NM_196265.1| Oryza sativa (japonica cultivar-group) hypothet... 40 8.0
23ref|XM_418264.1| PREDICTED: Gallus gallus similar to lung enrich... 40 8.0
24ref|XM_420542.1| PREDICTED: Gallus gallus similar to polycystin ... 40 8.0
25emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 40 8.0
26gb|AC102542.8| Mus musculus, clone RP23-110O23, complete sequence 40 8.0
27emb|BX927150.1| Corynebacterium glutamicum ATCC 13032, IS finger... 40 8.0
28emb|AL669849.19| Mouse DNA sequence from clone RP23-341O22 on ch... 40 8.0
29emb|AJ719584.1| Gallus gallus mRNA for hypothetical protein, clo... 40 8.0
30gb|AC107464.5| Homo sapiens BAC clone RP11-1191J2 from 4, comple... 40 8.0
31gb|AC091429.3| Homo sapiens chromosome 5 clone CTD-2161E19, comp... 40 8.0
32gb|AC008539.6| Homo sapiens chromosome 5 clone CTC-493L21, compl... 40 8.0
33gb|AC139887.3| Homo sapiens BAC clone RP11-440L14 from 4, comple... 40 8.0
34dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, compl... 40 8.0
35ref|XM_578716.1| PREDICTED: Rattus norvegicus similar to RIKEN c... 40 8.0 
>gb|AY603974.1| Oryza sativa (indica cultivar-group) BTH-induced protein phosphatase
            1 (bipp2C1) mRNA, complete cds
          Length = 1900

 Score =  226 bits (114), Expect = 6e-56
 Identities = 302/364 (82%), Gaps = 3/364 (0%)
 Strand = Plus / Plus

                                                                        
Query: 225  aggaaggagtggacaggatggagacgagcttggatgactctgaggcctcggacgggtcga 284
            ||||||| |||||||||||||||||||| ||||||||||||||||| || ||||| || |
Sbjct: 742  aggaaggtgtggacaggatggagacgagtttggatgactctgaggcttcagacggctcaa 801

                                                                        
Query: 285  ccacgcaggaggactctgacaccgacgtggagacggagtccagcagctccagcgcagggg 344
            ||||||||||    | ||| || ||||||||||||||||| ||| | || ||   ||  |
Sbjct: 802  ccacgcaggat---tttgatactgacgtggagacggagtcgagcggttcaagtatagaag 858

                                                                        
Query: 345  aacaggacacgggatatagagtccacgtcccactcatggaacaagtgatccgcgaggtat 404
            |||| |||| ||||||  |||| ||| |||||| || |||||||| |||| | || ||  
Sbjct: 859  aacaagacatgggatacggagtgcacatcccacacacggaacaagcgatctgtgaagtgg 918

                                                                        
Query: 405  ctggtgaaaacaacgcttcagaggcgaagagctctgataggatggattcagtagctgtat 464
            |  | | ||||||   |||||||| |||||||||||| ||||||  ||||||| |  || 
Sbjct: 919  ccaggggaaacaagagttcagaggtgaagagctctgacaggatgtcttcagtaaccctac 978

                                                                        
Query: 465  caacacttgtactagcttcaggtgcagccatgttacctcatccttcaaaggtgcacacag 524
            |||||||| || | |||||||||||||| ||| |||||||||||||||||||||  ||||
Sbjct: 979  caacacttatattggcttcaggtgcagcaatgctacctcatccttcaaaggtgctgacag 1038

                                                                        
Query: 525  gtggtgaagatgcttatttcatagcttgcgacggctggtttggtgtagcagatggagttg 584
            ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |
Sbjct: 1039 gtggtgaagatgcttattttatagcttgtgacggttggtttggtgtagcagatggagtag 1098

                
Query: 585  gtca 588
            ||||
Sbjct: 1099 gtca 1102
to top
>dbj|AK072473.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114B22, full
            insert sequence
          Length = 2756

 Score =  226 bits (114), Expect = 6e-56
 Identities = 302/364 (82%), Gaps = 3/364 (0%)
 Strand = Plus / Plus

                                                                        
Query: 225  aggaaggagtggacaggatggagacgagcttggatgactctgaggcctcggacgggtcga 284
            ||||||| |||||||||||||||||||| ||||||||||||||||| || ||||| || |
Sbjct: 953  aggaaggtgtggacaggatggagacgagtttggatgactctgaggcttcagacggctcaa 1012

                                                                        
Query: 285  ccacgcaggaggactctgacaccgacgtggagacggagtccagcagctccagcgcagggg 344
            ||||||||||    | ||| || ||||||||||||||||| ||| | || ||   ||  |
Sbjct: 1013 ccacgcaggat---tttgatactgacgtggagacggagtcgagcggttcaagtatagaag 1069

                                                                        
Query: 345  aacaggacacgggatatagagtccacgtcccactcatggaacaagtgatccgcgaggtat 404
            |||| |||| ||||||  |||| ||| |||||| || |||||||| |||| | || ||  
Sbjct: 1070 aacaagacatgggatacggagtgcacatcccacacacggaacaagcgatctgtgaagtgg 1129

                                                                        
Query: 405  ctggtgaaaacaacgcttcagaggcgaagagctctgataggatggattcagtagctgtat 464
            |  | | ||||||   |||||||| |||||||||||| ||||||  ||||||| |  || 
Sbjct: 1130 ccaggggaaacaagagttcagaggtgaagagctctgacaggatgtcttcagtaaccctac 1189

                                                                        
Query: 465  caacacttgtactagcttcaggtgcagccatgttacctcatccttcaaaggtgcacacag 524
            |||||||| || | |||||||||||||| ||| |||||||||||||||||||||  ||||
Sbjct: 1190 caacacttatattggcttcaggtgcagcaatgctacctcatccttcaaaggtgctgacag 1249

                                                                        
Query: 525  gtggtgaagatgcttatttcatagcttgcgacggctggtttggtgtagcagatggagttg 584
            ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |
Sbjct: 1250 gtggtgaagatgcttattttatagcttgtgacggttggtttggtgtagcagatggagtag 1309

                
Query: 585  gtca 588
            ||||
Sbjct: 1310 gtca 1313
to top
>dbj|AK068957.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003M17, full
            insert sequence
          Length = 2158

 Score =  226 bits (114), Expect = 6e-56
 Identities = 302/364 (82%), Gaps = 3/364 (0%)
 Strand = Plus / Plus

                                                                        
Query: 225  aggaaggagtggacaggatggagacgagcttggatgactctgaggcctcggacgggtcga 284
            ||||||| |||||||||||||||||||| ||||||||||||||||| || ||||| || |
Sbjct: 992  aggaaggtgtggacaggatggagacgagtttggatgactctgaggcttcagacggctcaa 1051

                                                                        
Query: 285  ccacgcaggaggactctgacaccgacgtggagacggagtccagcagctccagcgcagggg 344
            ||||||||||    | ||| || ||||||||||||||||| ||| | || ||   ||  |
Sbjct: 1052 ccacgcaggat---tttgatactgacgtggagacggagtcgagcggttcaagtatagaag 1108

                                                                        
Query: 345  aacaggacacgggatatagagtccacgtcccactcatggaacaagtgatccgcgaggtat 404
            |||| |||| ||||||  |||| ||| |||||| || |||||||| |||| | || ||  
Sbjct: 1109 aacaagacatgggatacggagtgcacatcccacacacggaacaagcgatctgtgaagtgg 1168

                                                                        
Query: 405  ctggtgaaaacaacgcttcagaggcgaagagctctgataggatggattcagtagctgtat 464
            |  | | ||||||   |||||||| |||||||||||| ||||||  ||||||| |  || 
Sbjct: 1169 ccaggggaaacaagagttcagaggtgaagagctctgacaggatgtcttcagtaaccctac 1228

                                                                        
Query: 465  caacacttgtactagcttcaggtgcagccatgttacctcatccttcaaaggtgcacacag 524
            |||||||| || | |||||||||||||| ||| |||||||||||||||||||||  ||||
Sbjct: 1229 caacacttatattggcttcaggtgcagcaatgctacctcatccttcaaaggtgctgacag 1288

                                                                        
Query: 525  gtggtgaagatgcttatttcatagcttgcgacggctggtttggtgtagcagatggagttg 584
            ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |
Sbjct: 1289 gtggtgaagatgcttattttatagcttgtgacggttggtttggtgtagcagatggagtag 1348

                
Query: 585  gtca 588
            ||||
Sbjct: 1349 gtca 1352
to top
>gb|AY107898.1| Zea mays PCO065177 mRNA sequence
          Length = 1316

 Score =  157 bits (79), Expect = 5e-35
 Identities = 139/159 (87%)
 Strand = Plus / Plus

                                                                       
Query: 430 gaagagctctgataggatggattcagtagctgtatcaacacttgtactagcttcaggtgc 489
           ||||| |||||||||||||  ||||||  ||| |||||||||||| || |||||||||||
Sbjct: 490 gaagatctctgataggatgacttcagtgtctgaatcaacacttgtgctggcttcaggtgc 549

                                                                       
Query: 490 agccatgttacctcatccttcaaaggtgcacacaggtggtgaagatgcttatttcatagc 549
           | | |||||||| |||||| | ||||| |  ||||||||||||||||| ||||| |||||
Sbjct: 550 atcaatgttaccgcatcctgcgaaggtacggacaggtggtgaagatgcatattttatagc 609

                                                  
Query: 550 ttgcgacggctggtttggtgtagcagatggagttggtca 588
           ||| || ||||||||||||||||||||||||||||||||
Sbjct: 610 ttgtgatggctggtttggtgtagcagatggagttggtca 648



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 44/46 (95%)
 Strand = Plus / Plus

                                                         
Query: 225 aggaaggagtggacaggatggagacgagcttggatgactctgaggc 270
           ||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 288 aggaaggagtggacaggatggggacgagcttggacgactctgaggc 333
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  103 bits (52), Expect = 6e-19
 Identities = 64/68 (94%)
 Strand = Plus / Plus

                                                                           
Query: 521     acaggtggtgaagatgcttatttcatagcttgcgacggctggtttggtgtagcagatgga 580
               ||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct: 4799862 acaggtggtgaagatgcttattttatagcttgtgacggttggtttggtgtagcagatgga 4799921

                       
Query: 581     gttggtca 588
               || |||||
Sbjct: 4799922 gtaggtca 4799929



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 87/100 (87%), Gaps = 3/100 (3%)
 Strand = Plus / Plus

                                                                           
Query: 225     aggaaggagtggacaggatggagacgagcttggatgactctgaggcctcggacgggtcga 284
               ||||||| |||||||||||||||||||| ||||||||||||||||| || ||||| || |
Sbjct: 4798216 aggaaggtgtggacaggatggagacgagtttggatgactctgaggcttcagacggctcaa 4798275

                                                       
Query: 285     ccacgcaggaggactctgacaccgacgtggagacggagtc 324
               ||||||||||    | ||| || |||||||||||||||||
Sbjct: 4798276 ccacgcaggat---tttgatactgacgtggagacggagtc 4798312



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                   
Query: 465     caacacttgtactagcttcaggtgcagccatgttacctcatccttcaaaggt 516
               |||||||| || | |||||||||||||| ||| |||||||||||||||||||
Sbjct: 4799172 caacacttatattggcttcaggtgcagcaatgctacctcatccttcaaaggt 4799223
to top
>gb|AC116604.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0019D17, from chromosome 3, complete sequence
          Length = 129658

 Score =  103 bits (52), Expect = 6e-19
 Identities = 64/68 (94%)
 Strand = Plus / Minus

                                                                         
Query: 521   acaggtggtgaagatgcttatttcatagcttgcgacggctggtttggtgtagcagatgga 580
             ||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct: 35593 acaggtggtgaagatgcttattttatagcttgtgacggttggtttggtgtagcagatgga 35534

                     
Query: 581   gttggtca 588
             || |||||
Sbjct: 35533 gtaggtca 35526



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 87/100 (87%), Gaps = 3/100 (3%)
 Strand = Plus / Minus

                                                                         
Query: 225   aggaaggagtggacaggatggagacgagcttggatgactctgaggcctcggacgggtcga 284
             ||||||| |||||||||||||||||||| ||||||||||||||||| || ||||| || |
Sbjct: 37239 aggaaggtgtggacaggatggagacgagtttggatgactctgaggcttcagacggctcaa 37180

                                                     
Query: 285   ccacgcaggaggactctgacaccgacgtggagacggagtc 324
             ||||||||||    | ||| || |||||||||||||||||
Sbjct: 37179 ccacgcaggat---tttgatactgacgtggagacggagtc 37143



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                 
Query: 465   caacacttgtactagcttcaggtgcagccatgttacctcatccttcaaaggt 516
             |||||||| || | |||||||||||||| ||| |||||||||||||||||||
Sbjct: 36283 caacacttatattggcttcaggtgcagcaatgctacctcatccttcaaaggt 36232
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  103 bits (52), Expect = 6e-19
 Identities = 64/68 (94%)
 Strand = Plus / Plus

                                                                           
Query: 521     acaggtggtgaagatgcttatttcatagcttgcgacggctggtttggtgtagcagatgga 580
               ||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct: 4799977 acaggtggtgaagatgcttattttatagcttgtgacggttggtttggtgtagcagatgga 4800036

                       
Query: 581     gttggtca 588
               || |||||
Sbjct: 4800037 gtaggtca 4800044



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 87/100 (87%), Gaps = 3/100 (3%)
 Strand = Plus / Plus

                                                                           
Query: 225     aggaaggagtggacaggatggagacgagcttggatgactctgaggcctcggacgggtcga 284
               ||||||| |||||||||||||||||||| ||||||||||||||||| || ||||| || |
Sbjct: 4798331 aggaaggtgtggacaggatggagacgagtttggatgactctgaggcttcagacggctcaa 4798390

                                                       
Query: 285     ccacgcaggaggactctgacaccgacgtggagacggagtc 324
               ||||||||||    | ||| || |||||||||||||||||
Sbjct: 4798391 ccacgcaggat---tttgatactgacgtggagacggagtc 4798427



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                   
Query: 465     caacacttgtactagcttcaggtgcagccatgttacctcatccttcaaaggt 516
               |||||||| || | |||||||||||||| ||| |||||||||||||||||||
Sbjct: 4799287 caacacttatattggcttcaggtgcagcaatgctacctcatccttcaaaggt 4799338
to top
>dbj|AK100049.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155A10, full
           insert sequence
          Length = 1876

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 136/167 (81%), Gaps = 2/167 (1%)
 Strand = Plus / Plus

                                                                       
Query: 420 cttcagaggcgaagagctctgataggatggattcagtagctgtatcaacacttgtactag 479
           ||||||||| |||||   |||||||||||| | |||||||   |||||| |||||  | |
Sbjct: 663 cttcagaggtgaagaatactgataggatggttccagtagcctcatcaacgcttgtgttgg 722

                                                                       
Query: 480 cttcaggtgcagccatgttacctcatccttcaaaggt-gcacacaggtggtgaagatgct 538
           | |||||||| || || || ||||||||||| ||||  ||| |||||||| |||||||| 
Sbjct: 723 catcaggtgctgcgatcttgcctcatccttctaaggcagca-acaggtggagaagatgca 781

                                                          
Query: 539 tatttcatagcttgcgacggctggtttggtgtagcagatggagttgg 585
           ||||| || || || || |||||||||||||| || |||||||||||
Sbjct: 782 tattttattgcgtgtgatggctggtttggtgtggctgatggagttgg 828
to top
>dbj|AK071987.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091J19, full
           insert sequence
          Length = 1857

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 136/167 (81%), Gaps = 2/167 (1%)
 Strand = Plus / Plus

                                                                       
Query: 420 cttcagaggcgaagagctctgataggatggattcagtagctgtatcaacacttgtactag 479
           ||||||||| |||||   |||||||||||| | |||||||   |||||| |||||  | |
Sbjct: 724 cttcagaggtgaagaatactgataggatggttccagtagcctcatcaacgcttgtgttgg 783

                                                                       
Query: 480 cttcaggtgcagccatgttacctcatccttcaaaggt-gcacacaggtggtgaagatgct 538
           | |||||||| || || || ||||||||||| ||||  ||| |||||||| |||||||| 
Sbjct: 784 catcaggtgctgcgatcttgcctcatccttctaaggcagca-acaggtggagaagatgca 842

                                                          
Query: 539 tatttcatagcttgcgacggctggtttggtgtagcagatggagttgg 585
           ||||| || || || || |||||||||||||| || |||||||||||
Sbjct: 843 tattttattgcgtgtgatggctggtttggtgtggctgatggagttgg 889
to top
>ref|NM_196105.1| Oryza sativa (japonica cultivar-group) putative protein phosphatase
           2C (OJ1003C07.6), mRNA
          Length = 1491

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                       
Query: 521 acaggtggtgaagatgcttatttcatagcttgcgacggctggtttggtgtagcagatgga 580
           |||||||| |||||||| ||||| || || || || |||||||||||||| || ||||||
Sbjct: 799 acaggtggagaagatgcatattttattgcgtgtgatggctggtttggtgtggctgatgga 858

                
Query: 581 gttgg 585
           |||||
Sbjct: 859 gttgg 863



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 78/97 (80%)
 Strand = Plus / Plus

                                                                       
Query: 420 cttcagaggcgaagagctctgataggatggattcagtagctgtatcaacacttgtactag 479
           ||||||||| |||||   |||||||||||| | |||||||   |||||| |||||  | |
Sbjct: 605 cttcagaggtgaagaatactgataggatggttccagtagcctcatcaacgcttgtgttgg 664

                                                
Query: 480 cttcaggtgcagccatgttacctcatccttcaaaggt 516
           | |||||||| || || || ||||||||||| |||||
Sbjct: 665 catcaggtgctgcgatcttgcctcatccttctaaggt 701
to top
>gb|AC113335.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
             Nipponbare clone OJ1003C07, from chromosome 10, complete
             sequence
          Length = 115188

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                         
Query: 521   acaggtggtgaagatgcttatttcatagcttgcgacggctggtttggtgtagcagatgga 580
             |||||||| |||||||| ||||| || || || || |||||||||||||| || ||||||
Sbjct: 42535 acaggtggagaagatgcatattttattgcgtgtgatggctggtttggtgtggctgatgga 42594

                  
Query: 581   gttgg 585
             |||||
Sbjct: 42595 gttgg 42599
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                            
Query: 521      acaggtggtgaagatgcttatttcatagcttgcgacggctggtttggtgtagcagatgga 580
                |||||||| |||||||| ||||| || || || || |||||||||||||| || ||||||
Sbjct: 11116522 acaggtggagaagatgcatattttattgcgtgtgatggctggtttggtgtggctgatgga 11116463

                     
Query: 581      gttgg 585
                |||||
Sbjct: 11116462 gttgg 11116458



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                       
Query: 545     atagcttgcgacggctggtttggtgtagcagatggagttg 584
               |||||||| ||||| ||||||||||||| |||||||||||
Sbjct: 7988205 atagcttgtgacggttggtttggtgtagtagatggagttg 7988244
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                            
Query: 521      acaggtggtgaagatgcttatttcatagcttgcgacggctggtttggtgtagcagatgga 580
                |||||||| |||||||| ||||| || || || || |||||||||||||| || ||||||
Sbjct: 11122962 acaggtggagaagatgcatattttattgcgtgtgatggctggtttggtgtggctgatgga 11122903

                     
Query: 581      gttgg 585
                |||||
Sbjct: 11122902 gttgg 11122898



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                       
Query: 545     atagcttgcgacggctggtttggtgtagcagatggagttg 584
               |||||||| ||||| ||||||||||||| |||||||||||
Sbjct: 7993304 atagcttgtgacggttggtttggtgtagtagatggagttg 7993343
to top
>gb|AC119149.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0079E01,
              complete sequence
          Length = 132870

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                      
Query: 545    atagcttgcgacggctggtttggtgtagcagatggagttg 584
              |||||||| ||||| ||||||||||||| |||||||||||
Sbjct: 104498 atagcttgtgacggttggtttggtgtagtagatggagttg 104459
to top
>dbj|AK069957.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037E09, full
            insert sequence
          Length = 1412

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                    
Query: 545  atagcttgcgacggctggtttggtgtagcagatggagttg 584
            |||||||| ||||| ||||||||||||| |||||||||||
Sbjct: 1152 atagcttgtgacggttggtttggtgtagtagatggagttg 1191
to top
>gb|AY432551.1| Aedes aegypti ASAP ID: 37027 unknown mRNA sequence
          Length = 698

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 514 ggtgcacacaggtggtgaagatgcttattt 543
           ||||||||| |||||||||||| |||||||
Sbjct: 162 ggtgcacacnggtggtgaagattcttattt 191
to top
>emb|AL645702.14| Mouse DNA sequence from clone RP23-163J17 on chromosome 1 Contains a
             ribosomal protein S2 (Rps2) pseudogene, a tigger
             transposable element derived 1 (TIGD1) pseudogene and a
             ribosomal protein L17 (Rpl17) pseudogene, complete
             sequence
          Length = 205103

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 17    accattggtggttcttcttcccccgtgga 45
             |||||||||||||||||||| ||| ||||
Sbjct: 95024 accattggtggttcttcttcgcccctgga 94996
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                         
Query: 545      atagcttgcgacggctggtttggtgtagcagatggagttgg 585
                |||||||| || || |||||||||||||||| | |||||||
Sbjct: 19246003 atagcttgtgatggttggtttggtgtagcagttagagttgg 19245963
to top
>dbj|AP004745.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0001B01
          Length = 147585

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 545   atagcttgcgacggctggtttggtgtagcagatggagttgg 585
             |||||||| || || |||||||||||||||| | |||||||
Sbjct: 83767 atagcttgtgatggttggtttggtgtagcagttagagttgg 83727
to top
>dbj|AP005470.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0043B22
          Length = 158857

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                       
Query: 545    atagcttgcgacggctggtttggtgtagcagatggagttgg 585
              |||||||| || || |||||||||||||||| | |||||||
Sbjct: 149488 atagcttgtgatggttggtttggtgtagcagttagagttgg 149448
to top
>ref|NM_001031140.1| Gallus gallus polycystic kidney disease 2 (autosomal dominant)
            (PKD2), mRNA
          Length = 3254

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 250  gagcttggatgactctgagg 269
            ||||||||||||||||||||
Sbjct: 2185 gagcttggatgactctgagg 2204
to top
>ref|NM_196265.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0094J09.16), mRNA
          Length = 711

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 486 gtgcagccatgttacctcatccttcaaaggtg 517
           ||||||| || | |||||||||||||||||||
Sbjct: 96  gtgcagcaatttcacctcatccttcaaaggtg 127
to top
>ref|XM_418264.1| PREDICTED: Gallus gallus similar to lung enriched kruppel like
           factor (LOC420148), mRNA
          Length = 1850

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 319 ggagtccagcagctccagcg 338
           ||||||||||||||||||||
Sbjct: 846 ggagtccagcagctccagcg 827
to top
>ref|XM_420542.1| PREDICTED: Gallus gallus similar to polycystin 2; polycystwin
           (LOC422583), mRNA
          Length = 1309

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 250 gagcttggatgactctgagg 269
           ||||||||||||||||||||
Sbjct: 1   gagcttggatgactctgagg 20
to top
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 322     gtccagcagctccagcgcag 341
               ||||||||||||||||||||
Sbjct: 1295134 gtccagcagctccagcgcag 1295115
to top
>gb|AC102542.8| Mus musculus, clone RP23-110O23, complete sequence
          Length = 270695

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 215   ccacaggccaaggaaggagt 234
             ||||||||||||||||||||
Sbjct: 29119 ccacaggccaaggaaggagt 29100
to top
>emb|BX927150.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete
              genome; segment 3/10
          Length = 348475

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 157    cggcgttttgcgcggcgaag 176
              ||||||||||||||||||||
Sbjct: 129788 cggcgttttgcgcggcgaag 129769
to top
>emb|AL669849.19| Mouse DNA sequence from clone RP23-341O22 on chromosome 11 Contains
             part of the Dock2 gene for dedicator of cyto-kinesis 2,
             complete sequence
          Length = 148320

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 558   gctggtttggtgtagcagatggag 581
             ||||||||||||||| ||||||||
Sbjct: 40351 gctggtttggtgtaggagatggag 40328
to top
>emb|AJ719584.1| Gallus gallus mRNA for hypothetical protein, clone 4e2
          Length = 3254

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 250  gagcttggatgactctgagg 269
            ||||||||||||||||||||
Sbjct: 2185 gagcttggatgactctgagg 2204
to top
>gb|AC107464.5| Homo sapiens BAC clone RP11-1191J2 from 4, complete sequence
          Length = 219357

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 35     tcccccgtggaggccccccaagca 58
              ||||||||||||||| ||||||||
Sbjct: 212606 tcccccgtggaggccacccaagca 212629
to top
>gb|AC091429.3| Homo sapiens chromosome 5 clone CTD-2161E19, complete sequence
          Length = 51428

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 483  caggtgcagccatgttacct 502
            ||||||||||||||||||||
Sbjct: 3043 caggtgcagccatgttacct 3062
to top
>gb|AC008539.6| Homo sapiens chromosome 5 clone CTC-493L21, complete sequence
          Length = 138633

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 483    caggtgcagccatgttacct 502
              ||||||||||||||||||||
Sbjct: 136384 caggtgcagccatgttacct 136403
to top
>gb|AC139887.3| Homo sapiens BAC clone RP11-440L14 from 4, complete sequence
          Length = 186774

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 35    tcccccgtggaggccccccaagca 58
             ||||||||||||||| ||||||||
Sbjct: 85296 tcccccgtggaggccacccaagca 85319
to top
>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 157    cggcgttttgcgcggcgaag 176
              ||||||||||||||||||||
Sbjct: 826173 cggcgttttgcgcggcgaag 826154
to top
>ref|XM_578716.1| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2210412K09
           (LOC503193), mRNA
          Length = 441

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 56  gcagaagctgctgtggcctc 75
           ||||||||||||||||||||
Sbjct: 407 gcagaagctgctgtggcctc 388


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,241,800
Number of Sequences: 3902068
Number of extensions: 4241800
Number of successful extensions: 76134
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75877
Number of HSP's gapped (non-prelim): 255
length of query: 588
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 565
effective length of database: 17,143,297,704
effective search space: 9685963202760
effective search space used: 9685963202760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top