ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd12o17 |
|---|---|
| Clone Library Name | barley_pub |
>AGAL_SCHPO (Q9URZ0) Probable alpha-galactosidase precursor (EC 3.2.1.22)| (Melibiase) (Alpha-D-galactoside galactohydrolase) Length = 436 Score = 57.4 bits (137), Expect = 3e-08 Identities = 52/203 (25%), Positives = 77/203 (37%), Gaps = 1/203 (0%) Frame = +3 Query: 15 GWNSYDSFSWTVDEIAYLQNAKILAEK-LLPHGYQYAVIDYLWYRRYVDGAYTDSYGFDN 191 GWNS++ ++ +DE L NAK + E+ LL GY+Y V+D W ++ A T Sbjct: 36 GWNSWNKYACDIDESIILNNAKAIKEEGLLDLGYEYIVMDDCW-SKHERNATT------- 87 Query: 192 IDEWGRPFPDLQRFPSSKGDKGFSQIASKVHEMGLKFGIHLMKGISTQAVNANTPILDIE 371 GR + +FP+ G +A K+H+MG KFG++ G Sbjct: 88 ----GRLEANPDKFPN-----GIGSMAKKLHDMGFKFGMYSSAG---------------- 122 Query: 372 TGKPYVENGRQWAARDIGLTHKTCAWMPHGFMSVNTDIGAGRAFLRSLYRQYADWGVDFV 551 TCA P D +ADWGVD++ Sbjct: 123 --------------------KYTCAGFPGSLNHEQIDADT-----------FADWGVDYL 151 Query: 552 KVDCIFGTDYSPEEVITISQLLR 620 K D F S +I+ + R Sbjct: 152 KYDNCFNEGKSGVPLISYERYKR 174
>AGAL_MOUSE (P51569) Alpha-galactosidase A precursor (EC 3.2.1.22) (Melibiase)| (Alpha-D-galactoside galactohydrolase) (Alpha-D-galactosidase A) Length = 419 Score = 44.7 bits (104), Expect = 2e-04 Identities = 50/192 (26%), Positives = 70/192 (36%), Gaps = 10/192 (5%) Frame = +3 Query: 15 GWNSYDSFSWTVD----------EIAYLQNAKILAEKLLPHGYQYAVIDYLWYRRYVDGA 164 GW ++ F +D E ++Q +AE ++ G++ A DYL Sbjct: 43 GWLHWERFMCNLDCQEEPDACISEQLFMQ----MAELMVSDGWRDAGYDYL--------C 90 Query: 165 YTDSYGFDNIDEWGRPFPDLQRFPSSKGDKGFSQIASKVHEMGLKFGIHLMKGISTQAVN 344 D + D GR D QRFPS G +A+ VH GLK GI+ Sbjct: 91 IDDCWMAPERDSKGRLQADPQRFPS-----GIKHLANYVHSKGLKLGIY----------- 134 Query: 345 ANTPILDIETGKPYVENGRQWAARDIGLTHKTCAWMPHGFMSVNTDIGAGRAFLRSLYRQ 524 D+G +KTCA P F S + D + Sbjct: 135 -----------------------ADVG--NKTCAGFPGSFGSYDIDA-----------QT 158 Query: 525 YADWGVDFVKVD 560 +ADWGVD +K D Sbjct: 159 FADWGVDLLKFD 170
>AGAL_ORYSA (Q9FXT4) Alpha-galactosidase precursor (EC 3.2.1.22) (Melibiase)| (Alpha-D-galactoside galactohydrolase) Length = 417 Score = 43.5 bits (101), Expect = 5e-04 Identities = 36/109 (33%), Positives = 44/109 (40%), Gaps = 3/109 (2%) Frame = +3 Query: 15 GWNSYDSFSWTVDEIAYLQNAKILAEK-LLPHGYQYAVIDYLW--YRRYVDGAYTDSYGF 185 GWNS++ F ++E + A L L GYQY ID W Y R Sbjct: 67 GWNSWNHFYCGINEQIIRETADALVNTGLAKLGYQYVNIDDCWAEYSR------------ 114 Query: 186 DNIDEWGRPFPDLQRFPSSKGDKGFSQIASKVHEMGLKFGIHLMKGIST 332 D G P+ Q FPS G +A VH GLK GI+ G T Sbjct: 115 ---DSQGNFVPNRQTFPS-----GIKALADYVHAKGLKLGIYSDAGSQT 155
>AGAL_COFAR (Q42656) Alpha-galactosidase precursor (EC 3.2.1.22) (Melibiase)| (Alpha-D-galactoside galactohydrolase) Length = 378 Score = 43.5 bits (101), Expect = 5e-04 Identities = 33/107 (30%), Positives = 42/107 (39%), Gaps = 1/107 (0%) Frame = +3 Query: 15 GWNSYDSFSWTVDEIAYLQNAKILAEK-LLPHGYQYAVIDYLWYRRYVDGAYTDSYGFDN 191 GWNS++ F +DE + A + K L GY+Y +D W N Sbjct: 27 GWNSWNHFRCNLDEKLIRETADAMVSKGLAALGYKYINLDDCWAEL-------------N 73 Query: 192 IDEWGRPFPDLQRFPSSKGDKGFSQIASKVHEMGLKFGIHLMKGIST 332 D G P FPS G +A VH GLK GI+ G T Sbjct: 74 RDSQGNLVPKGSTFPS-----GIKALADYVHSKGLKLGIYSDAGTQT 115
>AGAL_HUMAN (P06280) Alpha-galactosidase A precursor (EC 3.2.1.22) (Melibiase)| (Alpha-D-galactoside galactohydrolase) (Alpha-D-galactosidase A) (Agalsidase alfa) Length = 429 Score = 42.4 bits (98), Expect = 0.001 Identities = 48/193 (24%), Positives = 68/193 (35%), Gaps = 11/193 (5%) Frame = +3 Query: 15 GWNSYDSFSWTVD----------EIAYLQNAKIL-AEKLLPHGYQYAVIDYLWYRRYVDG 161 GW ++ F +D E +++ A+++ +E GY+Y ID W D Sbjct: 43 GWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWMAPQRDS 102 Query: 162 AYTDSYGFDNIDEWGRPFPDLQRFPSSKGDKGFSQIASKVHEMGLKFGIHLMKGISTQAV 341 GR D QRFP G Q+A+ VH GLK GI+ Sbjct: 103 E-------------GRLQADPQRFPH-----GIRQLANYVHSKGLKLGIY---------- 134 Query: 342 NANTPILDIETGKPYVENGRQWAARDIGLTHKTCAWMPHGFMSVNTDIGAGRAFLRSLYR 521 D+G +KTCA P F + D + Sbjct: 135 ------------------------ADVG--NKTCAGFPGSFGYYDIDA-----------Q 157 Query: 522 QYADWGVDFVKVD 560 +ADWGVD +K D Sbjct: 158 TFADWGVDLLKFD 170
>AGAL_CYATE (P14749) Alpha-galactosidase precursor (EC 3.2.1.22) (Melibiase)| (Alpha-D-galactoside galactohydrolase) Length = 411 Score = 42.4 bits (98), Expect = 0.001 Identities = 31/107 (28%), Positives = 42/107 (39%), Gaps = 1/107 (0%) Frame = +3 Query: 15 GWNSYDSFSWTVDEIAYLQNAKILAEK-LLPHGYQYAVIDYLWYRRYVDGAYTDSYGFDN 191 GWNS++ F ++E + A + L GYQY +D W N Sbjct: 59 GWNSWNHFGCDINENVVRETADAMVSTGLAALGYQYINLDDCWAEL-------------N 105 Query: 192 IDEWGRPFPDLQRFPSSKGDKGFSQIASKVHEMGLKFGIHLMKGIST 332 D G P+ FPS G +A VH GLK G++ G T Sbjct: 106 RDSEGNMVPNAAAFPS-----GIKALADYVHSKGLKLGVYSDAGNQT 147
>NAGAB_HUMAN (P17050) Alpha-N-acetylgalactosaminidase precursor (EC 3.2.1.49)| (Alpha-galactosidase B) Length = 411 Score = 33.1 bits (74), Expect = 0.69 Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 8/64 (12%) Frame = +3 Query: 156 DGAYTDSYGFDNIDE-W-------GRPFPDLQRFPSSKGDKGFSQIASKVHEMGLKFGIH 311 DG Y + NID+ W GR PD +RFP G +A VH +GLK GI+ Sbjct: 65 DGWRDMGYTYLNIDDCWIGGRDASGRLMPDPKRFPH-----GIPFLADYVHSLGLKLGIY 119 Query: 312 LMKG 323 G Sbjct: 120 ADMG 123
>NAGAB_MOUSE (Q9QWR8) Alpha-N-acetylgalactosaminidase precursor (EC 3.2.1.49)| (Alpha-galactosidase B) Length = 415 Score = 32.7 bits (73), Expect = 0.90 Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 13/112 (11%) Frame = +3 Query: 15 GWNSYDSFSWTVDEIAYLQNAKILAEKLLPH-------------GYQYAVIDYLWYRRYV 155 GW +++ F +D + +N ++E+L GY Y ID W Sbjct: 29 GWLAWERFRCNIDCVEDPKNC--ISERLFMEMADRLAQDGWRDLGYVYLNIDDCW----- 81 Query: 156 DGAYTDSYGFDNIDEWGRPFPDLQRFPSSKGDKGFSQIASKVHEMGLKFGIH 311 D GR PD +RFP G + +A H +GLK GI+ Sbjct: 82 ---------IGGRDASGRLIPDPKRFPH-----GIAFLADYAHSLGLKLGIY 119
>NAGAB_RAT (Q66H12) Alpha-N-acetylgalactosaminidase precursor (EC 3.2.1.49)| (Alpha-galactosidase B) Length = 415 Score = 31.6 bits (70), Expect = 2.0 Identities = 22/68 (32%), Positives = 27/68 (39%) Frame = +3 Query: 108 GYQYAVIDYLWYRRYVDGAYTDSYGFDNIDEWGRPFPDLQRFPSSKGDKGFSQIASKVHE 287 GY Y ID W D GR PD +RFP G + +A H Sbjct: 71 GYVYLNIDDCW--------------IGGRDATGRLIPDPKRFPH-----GIAFLADYAHS 111 Query: 288 MGLKFGIH 311 +GLK GI+ Sbjct: 112 LGLKLGIY 119
>NAGAB_BOVIN (Q58DH9) Alpha-N-acetylgalactosaminidase precursor (EC 3.2.1.49)| (Alpha-galactosidase B) Length = 411 Score = 30.8 bits (68), Expect = 3.4 Identities = 29/110 (26%), Positives = 42/110 (38%), Gaps = 11/110 (10%) Frame = +3 Query: 15 GWNSYDSFSWTVD----------EIAYLQNAKILAEK-LLPHGYQYAVIDYLWYRRYVDG 161 GW +++ F +D E +++ A LA+ GY Y ID W Sbjct: 29 GWLAWERFRCNIDCSEDPKNCISEQLFMEMADRLAQDGWRDLGYVYLNIDDCW------- 81 Query: 162 AYTDSYGFDNIDEWGRPFPDLQRFPSSKGDKGFSQIASKVHEMGLKFGIH 311 D G PD +RFP G + +A H +GLK GI+ Sbjct: 82 -------IGGRDAKGNLVPDRKRFPH-----GIAFLADYAHSLGLKLGIY 119
>DXS_CHLMU (Q9PK62) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)| (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) Length = 632 Score = 30.4 bits (67), Expect = 4.5 Identities = 26/98 (26%), Positives = 34/98 (34%), Gaps = 9/98 (9%) Frame = +3 Query: 183 FDNIDEWGRPFPDLQRFPSSKGDKGFSQIASKVHEMGLKFGIHLMKGISTQAVNANTPIL 362 F I W R P R S K + S H + +FGIH + + P L Sbjct: 203 FQKIHSWMRKIPGFSRQKSELLHKVDIALKSLSHPLFEQFGIHYVGPFDGHNIKKLIPAL 262 Query: 363 DIETGKPY---------VENGRQWAARDIGLTHKTCAW 449 + G PY NG A +D L H A+ Sbjct: 263 EAVKGLPYPVLFHVCTAKGNGLAEAEKDPALYHGVKAY 300
>YG49_SCHPO (O60184) Protein C23E6.09 in chromosome II| Length = 1102 Score = 30.4 bits (67), Expect = 4.5 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Frame = -1 Query: 576 QYQRYNQPSQNQHPNPHTVGKEILRRPVQLQYQY--LHS*IHVASMHMFYGSGQYHELPI 403 Q Q QP Q QH P + ++P+Q Q Q LHS I + +G Y+ +P Sbjct: 171 QSQPQQQPQQQQHQQPQQ--PQPPQQPLQQQQQQRQLHSGIQQPVSTIVSQNGTYYSIPA 228 Query: 402 ADHSL 388 +H + Sbjct: 229 VNHPM 233
>EXS_ARATH (Q9LYN8) Leucine-rich repeat receptor protein kinase EXS precursor| (EC 2.7.11.1) (Extra sporogenous cells protein) (EXCESS MICROSPOROCYTES1 protein) Length = 1192 Score = 30.0 bits (66), Expect = 5.8 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%) Frame = -2 Query: 599 YYFFWAIISTKDTINLHKINTPIRILSVKRS*EGPS---SSNISIYTHKSMWHPCTCFMG 429 + F + S+ ++L T + +S KRS E PS S N+S W TC +G Sbjct: 8 FLFLFFSFSSSAIVDLSSETTSL--ISFKRSLENPSLLSSWNVSSSASHCDWVGVTCLLG 65 Query: 428 QANITSCP 405 + N S P Sbjct: 66 RVNSLSLP 73 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 100,243,487 Number of Sequences: 219361 Number of extensions: 2294645 Number of successful extensions: 6174 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 5950 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6165 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5767334219 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
