>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa
           DNA-pairing protein) (hPOMp
          Length = 707

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 18/41 (43%), Positives = 19/41 (46%)
 Frame = +3

Query: 354 SIPQAQPPTVSPMPGLNATEVQQXPFPPVASKNAPXGAXPP 476
           S P A PPT    PG         P PP A  +AP GA PP
Sbjct: 130 SAPPATPPTSGAPPGSGPGPT---PTPPPAVTSAPPGAPPP 167

>GFC1_HUMAN (P63117) HERV-F(c)1_Xq21.33 provirus ancestral Gag polyprotein (Gag|
           polyprotein) [Contains: Matrix protein; Capsid protein]
          Length = 469

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 15/41 (36%), Positives = 17/41 (41%)
 Frame = +3

Query: 357 IPQAQPPTVSPMPGLNATEVQQXPFPPVASKNAPXGAXPPP 479
           +P A PP      G   T     P PP +  N P  A PPP
Sbjct: 133 LPAALPPPYPGSSGPTPTAPPLPPTPPSSPANPPASALPPP 173

>PRP2_MOUSE (P05142) Proline-rich protein MP-2 precursor|
          Length = 261

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +3

Query: 360 PQAQPPTVSPMPGLNATEVQQXPFPPVASKNAPXGAXPPP 479
           PQ +PP   P PG       Q P PP   +  P    PPP
Sbjct: 128 PQPRPPQGPPPPGGPQLRPPQGPPPPAGPQPRPPQGPPPP 167



 Score = 30.4 bits (67), Expect = 2.5
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +3

Query: 360 PQAQPPTVSPMPGLNATEVQQXPFPPVASKNAPXGAXPPP 479
           PQ +PP   P PG       Q P PP   +  P    PPP
Sbjct: 86  PQPRPPQGPPPPGGPQPRPPQGPPPPGGPQQRPPQGPPPP 125



 Score = 30.0 bits (66), Expect = 3.3
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = +3

Query: 360 PQAQPPTVSPMPGLNATEVQQXPFPPVASKNAPXGAXPP 476
           PQ QPP   P PG       Q P PP   + +P    PP
Sbjct: 197 PQQQPPQGPPPPGGPQPRPPQGPPPPGGPQPSPTQGPPP 235



 Score = 29.6 bits (65), Expect = 4.3
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +3

Query: 360 PQAQPPTVSPMPGLNATEVQQXPFPPVASKNAPXGAXPPP 479
           PQ +PP   P PG       Q P PP   +  P    PPP
Sbjct: 100 PQPRPPQGPPPPGGPQQRPPQGPPPPGGPQPRPPQGPPPP 139



 Score = 29.6 bits (65), Expect = 4.3
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +3

Query: 360 PQAQPPTVSPMPGLNATEVQQXPFPPVASKNAPXGAXPPP 479
           PQ +PP   P PG       Q P PP   +  P    PPP
Sbjct: 72  PQPRPPQGPPPPGGPQPRPPQGPPPPGGPQPRPPQGPPPP 111



 Score = 29.6 bits (65), Expect = 4.3
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +3

Query: 360 PQAQPPTVSPMPGLNATEVQQXPFPPVASKNAPXGAXPPP 479
           PQ +PP   P PG       Q P PP   +  P    PPP
Sbjct: 58  PQPRPPQGPPPPGGPQPRPPQGPPPPGGPQPRPPQGPPPP 97



 Score = 29.3 bits (64), Expect = 5.6
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +3

Query: 360 PQAQPPTVSPMPGLNATEVQQXPFPPVASKNAPXGAXPPP 479
           PQ +PP   P PG       Q P PP   +  P    PPP
Sbjct: 114 PQQRPPQGPPPPGGPQPRPPQGPPPPGGPQLRPPQGPPPP 153

>PMP3_MOUSE (P05143) Proline-rich protein MP-3 (Fragment)|
          Length = 296

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +3

Query: 360 PQAQPPTVSPMPGLNATEVQQXPFPPVASKNAPXGAXPPP 479
           PQ +PP   P PG       Q P PP   +  P    PPP
Sbjct: 121 PQQRPPQGPPPPGGPQPRPPQGPPPPAGPQPRPPQGPPPP 160



 Score = 30.4 bits (67), Expect = 2.5
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +3

Query: 360 PQAQPPTVSPMPGLNATEVQQXPFPPVASKNAPXGAXPPP 479
           PQ +PP   P PG       Q P PP   +  P    PPP
Sbjct: 93  PQPRPPQGPPPPGGPQQRPPQGPPPPGGPQQRPPQGPPPP 132



 Score = 30.4 bits (67), Expect = 2.5
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +3

Query: 360 PQAQPPTVSPMPGLNATEVQQXPFPPVASKNAPXGAXPPP 479
           PQ +PP   P PG       Q P PP   +  P    PPP
Sbjct: 79  PQPRPPQGPPPPGGPQPRPPQGPPPPGGPQQRPPQGPPPP 118



 Score = 29.6 bits (65), Expect = 4.3
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +3

Query: 360 PQAQPPTVSPMPGLNATEVQQXPFPPVASKNAPXGAXPPP 479
           PQ +PP   P PG       Q P PP   +  P    PPP
Sbjct: 107 PQQRPPQGPPPPGGPQQRPPQGPPPPGGPQPRPPQGPPPP 146



 Score = 29.6 bits (65), Expect = 4.3
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +3

Query: 360 PQAQPPTVSPMPGLNATEVQQXPFPPVASKNAPXGAXPPP 479
           PQ +PP   P PG       Q P PP   +  P    PPP
Sbjct: 65  PQPRPPQGPPPPGGPQPRPPQGPPPPGGPQPRPPQGPPPP 104



 Score = 29.6 bits (65), Expect = 4.3
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +3

Query: 360 PQAQPPTVSPMPGLNATEVQQXPFPPVASKNAPXGAXPPP 479
           PQ +PP   P PG       Q P PP   +  P    PPP
Sbjct: 51  PQPRPPQGPPPPGGPQPRPPQGPPPPGGPQPRPPQGPPPP 90



 Score = 29.6 bits (65), Expect = 4.3
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +3

Query: 360 PQAQPPTVSPMPGLNATEVQQXPFPPVASKNAPXGAXPPP 479
           PQ +PP   P PG       Q P PP   +  P    PPP
Sbjct: 37  PQPRPPQGPPPPGGPQPRPPQGPPPPGGPQPRPPQGPPPP 76

>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = +3

Query: 372 PPTVSPMPGLNATEVQQXPFPPVASKNAPXGAXPPP 479
           PPT SP P    T  Q  P PP  S   P  + PPP
Sbjct: 413 PPTYSPPP---PTYAQPPPLPPTYSPPPPAYSPPPP 445

>PEXLP_TOBAC (Q03211) Pistil-specific extensin-like protein precursor (PELP)|
          Length = 426

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +3

Query: 360 PQAQPPTVSPMPG--LNATEVQQXPFPPVASKNAPXGAXP 473
           P A+PP ++P P    N   + + P PPV     P G  P
Sbjct: 250 PAAEPPIIAPFPSPPANPPLIPRRPAPPVVKPLPPLGKPP 289

>ADEN_ADEB4 (O71150) Adenain (EC 3.4.22.39) (Endoprotease) (Late L3 23 kDa|
           protein)
          Length = 201

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -3

Query: 285 RNLNDASPAQRPCDPSSYHESSD 217
           ++LN ASP+  P DPSS H++ D
Sbjct: 147 QSLNGASPSLTPSDPSSLHKNQD 169

>SEM4C_HUMAN (Q9C0C4) Semaphorin-4C precursor|
          Length = 833

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 10/47 (21%)
 Frame = -1

Query: 407 CVQSWHR*HGWRLSLRNRTLIL----RHP------SPPW*APILPSK 297
           C+ +WHR HG+  SL     IL    +HP       P W  P+L  K
Sbjct: 370 CINNWHRRHGYTSSLELPDNILNFVKKHPLMEEQVGPRWSRPLLVKK 416

>MAML2_HUMAN (Q8IZL2) Mastermind-like protein 2 (Mam-2)|
          Length = 1153

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 351 GSIPQAQPPTVSPMPGLNATEVQQXPFPPVASKNAPXGAXPP 476
           G++P  QP T S   G+N    Q+ P   +A++N P    PP
Sbjct: 868 GNLPCNQPNTYSVTSGMNQLTQQRNPKQLLANQNNPMMPRPP 909

>GLPQ2_ARATH (Q9SZ11) Probable glycerophosphoryl diester phosphodiesterase 2|
           precursor (EC 3.1.4.46)
          Length = 759

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 360 PQAQPPTVSPMPGLNATEVQQXPFPPVASKNAPXGAXPPP 479
           P A PP  +P P     +V + P PPV +K AP  +   P
Sbjct: 689 PTAFPPAEAPNPVFTDADVTEPPLPPVTAK-APTSSPGTP 727

>IF2_SYNY3 (P72689) Translation initiation factor IF-2|
          Length = 1001

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +3

Query: 360 PQAQPPTVSPMPGLNATEVQQXPFPPVASKNAP 458
           P    PT  P P L A +    P PPVA  +AP
Sbjct: 96  PSPARPTPPPRPKLQAPKAPTPPQPPVAKASAP 128

>FMN1B_MOUSE (Q05859) Formin-1 isoform IV (Limb deformity protein)|
          Length = 1206

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = +3

Query: 360 PQAQPPTVSPMPGLNATEVQQXPFPPVASKNAPXGAXPPP 479
           P   PP   P+P + A      P PP      P G  PPP
Sbjct: 703 PPPPPPPPPPLPNVLALPNSGGPPPPPPPPPPPPGLAPPP 742

>SECD_MYCTU (Q50634) Protein-export membrane protein secD|
          Length = 573

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
 Frame = +3

Query: 360 PQAQPPTVSPMPGLNATEVQQXPFP--PVASKNAPXGAXPPP 479
           P A PP  S  P       Q  P+P  P  S N    A PPP
Sbjct: 148 PAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPNPTSPASPPP 189

>FMN1A_MOUSE (Q05860) Formin-1 isoforms I/II/III (Limb deformity protein)|
          Length = 1468

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = +3

Query: 360  PQAQPPTVSPMPGLNATEVQQXPFPPVASKNAPXGAXPPP 479
            P   PP   P+P + A      P PP      P G  PPP
Sbjct: 929  PPPPPPPPPPLPNVLALPNSGGPPPPPPPPPPPPGLAPPP 968

>YAP1_CHICK (P46936) 65 kDa Yes-associated protein (YAP65)|
          Length = 448

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 16/40 (40%), Positives = 17/40 (42%)
 Frame = +3

Query: 360 PQAQPPTVSPMPGLNATEVQQXPFPPVASKNAPXGAXPPP 479
           PQ Q P  +  P       Q  P PP A   AP GA  PP
Sbjct: 6   PQPQQPPQAAQP---PAPQQAAPQPPGAGSGAPGGAAQPP 42

>VP61_NPVOP (O10270) 61 kDa protein homolog|
          Length = 474

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = +3

Query: 351 GSIPQAQPPTVSPMPGLNATEVQQXPFPPVASKNAPXGAXPPP 479
           G+ P A PP   P P  + T     P PP  S +      PPP
Sbjct: 261 GATPVAPPPP--PFPSADVTTSMPPPPPPFPSADVTTSMPPPP 301

>FRAH_ANASP (P46017) Protein fraH|
          Length = 289

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 357 IPQAQPPTVSPMPGLNATEVQQXPFPPVASKNAPXGAXPPP 479
           +P   PP  +P P L   +       PVA++N P  A  PP
Sbjct: 69  VPVEVPPLANPDPLLELLQPNALGLDPVANENPPAPAPLPP 109

>PODXL_RABIT (Q28645) Podocalyxin-like protein 1 precursor|
          Length = 551

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 354 SIPQAQPPTVSPMPGLNATEVQQXPFP--PVASKNAPXGAXPPP 479
           S PQ +P T++P+     T+    P P  P +  ++P  + P P
Sbjct: 223 STPQGKPATLTPVASSAETQGMPSPMPPSPASPSSSPFPSSPSP 266

>WEB1_YEAST (P38968) Protein WEB1 (Protein transport protein SEC31)|
          Length = 1273

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = +3

Query: 354 SIPQAQPPTVSPMPGLNATEVQQXPFPPVASKNAP---XGAXPPP 479
           SIP  Q P     PG +A  +   P+ P  + +AP    G   PP
Sbjct: 785 SIPSMQAPFYGMTPGASANALPPKPYVPATTTSAPVHTEGKYAPP 829

>EP300_HUMAN (Q09472) E1A-associated protein p300 (EC 2.3.1.48)|
          Length = 2414

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +3

Query: 351 GSIPQAQPPTVSPMPGLNATEVQQXPFPPVASKNAP 458
           GS+P    P ++P  GLN         PP+  +  P
Sbjct: 696 GSVPNQMMPRITPQSGLNQFGQMSMAQPPIVPRQTP 731


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,219,473
Number of Sequences: 219361
Number of extensions: 1305258
Number of successful extensions: 3858
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3822
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)