ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd13d11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, ... 377 e-101
2gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones B... 163 9e-37
3gb|AF453665.1| Hordeum vulgare isolate HV Sukkula retrotransposo... 149 1e-32
4gb|AY054377.1| Hordeum vulgare clone LTR-INS1 Sukkula retrotrans... 149 1e-32
5gb|AY054376.1| Hordeum vulgare Sukkula retrotransposon long term... 149 1e-32
6emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H 141 3e-30
7gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC cl... 139 1e-29
8gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones B... 133 8e-28
9gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complet... 131 3e-27
10gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, comple... 125 2e-25
11gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic prote... 119 1e-23
12gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, ... 111 3e-21
13gb|AF509775.1| Hordeum vulgare subsp. vulgare isolate RSB409A Rp... 78 4e-11
14gb|AF509774.1| Hordeum vulgare subsp. vulgare isolate RSB347 Rpg... 78 4e-11
15gb|AY054380.1| Hordeum patagonicum clone HpaLTR-INS Sukkula retr... 58 4e-05
16gb|AY054379.1| Hordeum murinum clone HmuLTR-INS Sukkula retrotra... 52 0.002
17gb|AC020978.10| Homo sapiens chromosome 16 clone RP11-96D1, comp... 48 0.039
18gb|AF411057.1|AF411057 Homo sapiens clone BAC_22606 CD28 antigen... 46 0.15
19gb|AC125238.5| Homo sapiens BAC clone RP11-711C24 from 2, comple... 46 0.15
20gb|AF225899.1|AF225899 Homo sapiens PAC clone 219d7, complete se... 46 0.15
21emb|AL353801.13| Human DNA sequence from clone RP11-285G1 on chr... 44 0.60
22gb|AC123978.5| Papio anubis clone rp41-211d5, complete sequence 44 0.60
23dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome 44 0.60
24gb|AF207760.1|AF207760 Hepatitis C virus strain MD19 complete ge... 44 0.60
25ref|NM_186505.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.4
26gb|AF326781.1| Triticum monococcum actin (ACT-1) gene, partial c... 42 2.4
27emb|BX640428.1| Bordetella parapertussis strain 12822, complete ... 42 2.4
28gb|AC108681.2| Homo sapiens 3q BAC RP11-30O15 (Roswell Park Canc... 42 2.4
29gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 42 2.4
30gb|AY188331.1| Triticum monococcum DV92 chromosome 5AL BAC 231A1... 42 2.4
31ref|XM_395108.2| PREDICTED: Apis mellifera similar to dynein hea... 42 2.4
32dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
33dbj|AP004002.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
34gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome 42 2.4
35gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete g... 42 2.4
36gb|AC159817.2| Mus musculus BAC clone RP23-228E8 from chromosome... 40 9.4
37gb|AC161587.2| Mus musculus BAC clone RP24-492G17 from chromosom... 40 9.4
38gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome 40 9.4
39gb|AC102090.14| Mus musculus chromosome 1, clone RP23-7I3, compl... 40 9.4
40gb|AC130598.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.4
41ref|XM_956688.1| Neurospora crassa OR74A hypothetical protein (N... 40 9.4
42ref|XM_328597.1| Neurospora crassa OR74A hypothetical protein (N... 40 9.4
43gb|AY809181.1| Schistosoma japonicum SJCHGC07897 protein mRNA, p... 40 9.4
44gb|AC092710.6| Mus musculus chromosome 13, clone RP23-5A19, comp... 40 9.4
45gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 40 9.4
46gb|AC160458.4| Mus musculus chromosome 5, clone RP23-14C20, comp... 40 9.4
47gb|AC161249.2| Mus musculus BAC clone RP24-541G2 from chromosome... 40 9.4
48emb|CT010576.9| Mouse DNA sequence from clone RP23-193B21 on chr... 40 9.4
49gb|AC006315.2| Homo sapiens PAC clone RP4-630F1 from 7, complete... 40 9.4
50gb|AC133000.5| Rattus Norvegicus Strain CH230-62B6 BAC, BN/SsNHs... 40 9.4
51emb|AL109935.39|HSJ1022P6 Human DNA sequence from clone RP5-1022... 40 9.4
52gb|AC101004.6| Mus musculus, clone RP23-79E5, complete sequence 40 9.4
53emb|AL035457.13|HS1106N18 Human DNA sequence from clone RP5-1106... 40 9.4
54emb|CR627485.10| Zebrafish DNA sequence from clone DKEY-203E10 i... 40 9.4
55emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete g... 40 9.4
56gb|AC010052.7| Drosophila melanogaster 3L BAC RP98-5G1 (Roswell ... 40 9.4
57gb|AC092052.2| Homo sapiens chromosome 3 clone RP11-329N16, comp... 40 9.4
58gb|AC106871.5| Homo sapiens BAC clone RP11-361D14 from 4, comple... 40 9.4
59gb|AC008125.9| Homo sapiens 12 BAC RPCI11-25E2 (Roswell Park Can... 40 9.4
60gb|AC009878.9| Homo sapiens chromosome 15, clone RP11-345N11, co... 40 9.4
61gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, geno... 40 9.4
62gb|AC154654.2| Mus musculus BAC clone RP24-262O15 from chromosom... 40 9.4
63gb|AC022603.5|AC022603 Homo sapiens chromosome 15, clone RP11-20... 40 9.4
64dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.4
65gb|AF323785.1|AF323785 Oryza sativa subsp. indica KNOX class hom... 40 9.4
66gb|AC093083.4| Homo sapiens BAC clone RP11-558I16 from 2, comple... 40 9.4
67gb|AC136926.4| Rattus Norvegicus Strain CH230-163A18 BAC, BN/SsN... 40 9.4
68ref|XM_220197.3| PREDICTED: Rattus norvegicus zinc finger protei... 40 9.4
69dbj|AK111878.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.4
70gb|AF050180.1|AF050180 Oryza sativa strain Indica IR58 KNOX clas... 40 9.4
71gb|AE003549.4| Drosophila melanogaster chromosome 3L, section 36... 40 9.4
72dbj|AK112676.1| Ciona intestinalis cDNA, clone:cieg028i09, full ... 40 9.4
73dbj|AB028885.1| Oryza sativa mRNA for knotted1-type homeobox pro... 40 9.4
74emb|AL592482.6| Mouse DNA sequence from clone RP23-220K2 on chro... 40 9.4 
>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence
          Length = 108608

 Score =  377 bits (190), Expect = e-101
 Identities = 232/244 (95%), Gaps = 4/244 (1%)
 Strand = Plus / Plus

                                                                         
Query: 451   cttcctgatgagtgtgattgggttgtttggattga---ccccctcccactgagctagtgg 507
             |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||| 
Sbjct: 52504 cttcctgatgagtgtgattgggttgtttggattgaaccccccctcccactgagctagtgt 52563

                                                                         
Query: 508   ggcaagcttttcaggagctccatggtggcctttaacgtagttggatcaaagctagtagga 567
             ||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 52564 ggcaagcttttgaggagttccatggtggccttgaacgtagttggatcaaagctagtagga 52623

                                                                         
Query: 568   tggagaagaaggttatggatctgaacaat-aaaacaagaaaatgcaattgaagttgcaga 626
             ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 52624 tggagaagaaggttatggatctgaataatgaaaacaagaaaatgcaattgaagttgcaga 52683

                                                                         
Query: 627   aaaggaatgatctcatggaaacaatgggttttctctttgttcttggcatcatcattatgg 686
             |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 52684 aaaggaatgagctcatggaaacaatgtgttttctctttgttcttggcatcatcattgtgg 52743

                 
Query: 687   ctag 690
             ||||
Sbjct: 52744 ctag 52747



 Score =  291 bits (147), Expect = 2e-75
 Identities = 172/179 (96%), Gaps = 1/179 (0%)
 Strand = Plus / Plus

                                                                         
Query: 273   aggtggatggatgcggaactgtgcagttccaatccgaatttttcattcccaatccaa-tt 331
             |||||||||| ||||| | |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 52232 aggtggatggctgcgggattgtgcagttccaatccgaatttttcattcccaatccaagtt 52291

                                                                         
Query: 332   tctacggccttgaggagcgctcgaatcaccgttgcccggggcatgggctaattcctgctc 391
             |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 52292 tctacggccttgaggagcgcccgaatcaccgttgcccggggcatgggctaattcctgctc 52351

                                                                        
Query: 392   gtcgtgtttcttggggtggagcaagcacgggaagaaggtttttgggttgtccactcgat 450
             | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 52352 gccgtgtttcttggggtggagcaagcacggaaagaaggtttttgggttgtccactcgat 52410
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>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness
             locus region
          Length = 129099

 Score =  163 bits (82), Expect = 9e-37
 Identities = 91/94 (96%)
 Strand = Plus / Minus

                                                                         
Query: 182   agagttccgcaacgtgccggattgtgaggacccgttcgactacatcggttcgtctgcttc 241
             ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 69780 agagttccgcagcgtgccggattgtgaggacccgttcgactacgtcggttcgtctgcttc 69721

                                               
Query: 242   acggaggcattcttcttctaagcgggatctcagg 275
             |||||||||||||||||| |||||||||||||||
Sbjct: 69720 acggaggcattcttcttccaagcgggatctcagg 69687
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>gb|AF453665.1| Hordeum vulgare isolate HV Sukkula retrotransposon, partial sequence
          Length = 7674

 Score =  149 bits (75), Expect = 1e-32
 Identities = 91/95 (95%), Gaps = 1/95 (1%)
 Strand = Plus / Plus

                                                                        
Query: 182  agagttccgcaa-cgtgccggattgtgaggacccgttcgactacatcggttcgtctgctt 240
            |||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 2562 agagttccgcaagcgtgccggattgtgaggactcgttcgactacgtcggttcgtctgctt 2621

                                               
Query: 241  cacggaggcattcttcttctaagcgggatctcagg 275
            ||||||||||||||||||| |||||||||||||||
Sbjct: 2622 cacggaggcattcttcttccaagcgggatctcagg 2656
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>gb|AY054377.1| Hordeum vulgare clone LTR-INS1 Sukkula retrotransposon long terminal
            repeat, complete sequence
          Length = 7575

 Score =  149 bits (75), Expect = 1e-32
 Identities = 91/95 (95%), Gaps = 1/95 (1%)
 Strand = Plus / Plus

                                                                        
Query: 182  agagttccgcaa-cgtgccggattgtgaggacccgttcgactacatcggttcgtctgctt 240
            |||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 2562 agagttccgcaagcgtgccggattgtgaggactcgttcgactacgtcggttcgtctgctt 2621

                                               
Query: 241  cacggaggcattcttcttctaagcgggatctcagg 275
            ||||||||||||||||||| |||||||||||||||
Sbjct: 2622 cacggaggcattcttcttccaagcgggatctcagg 2656
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>gb|AY054376.1| Hordeum vulgare Sukkula retrotransposon long terminal repeat, partial
            and complete sequences
          Length = 11820

 Score =  149 bits (75), Expect = 1e-32
 Identities = 91/95 (95%), Gaps = 1/95 (1%)
 Strand = Plus / Plus

                                                                        
Query: 182  agagttccgcaa-cgtgccggattgtgaggacccgttcgactacatcggttcgtctgctt 240
            |||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 2562 agagttccgcaagcgtgccggattgtgaggactcgttcgactacgtcggttcgtctgctt 2621

                                               
Query: 241  cacggaggcattcttcttctaagcgggatctcagg 275
            ||||||||||||||||||| |||||||||||||||
Sbjct: 2622 cacggaggcattcttcttccaagcgggatctcagg 2656



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 205   gtgaggacccgttcgactac 224
             ||||||||||||||||||||
Sbjct: 10117 gtgaggacccgttcgactac 10136
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>emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H
          Length = 59748

 Score =  141 bits (71), Expect = 3e-30
 Identities = 90/95 (94%), Gaps = 1/95 (1%)
 Strand = Plus / Minus

                                                                         
Query: 182   agagttccgcaa-cgtgccggattgtgaggacccgttcgactacatcggttcgtctgctt 240
             |||||||||||| |||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct: 38929 agagttccgcaagcgtgtcggattgtgaggacccgttcgactacgtcagttcgtctgctt 38870

                                                
Query: 241   cacggaggcattcttcttctaagcgggatctcagg 275
             ||||||||||||||||||| |||||||||||||||
Sbjct: 38869 cacggaggcattcttcttccaagcgggatctcagg 38835
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>gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC clone 773k14, complete
             sequence
          Length = 113510

 Score =  139 bits (70), Expect = 1e-29
 Identities = 88/94 (93%)
 Strand = Plus / Minus

                                                                         
Query: 182   agagttccgcaacgtgccggattgtgaggacccgttcgactacatcggttcgtctgcttc 241
             ||||||||| | ||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 18010 agagttccggagcgtgccggattgtgaggacccgttcgactacgtcggttcgtcagcttc 17951

                                               
Query: 242   acggaggcattcttcttctaagcgggatctcagg 275
             ||| |||||||||||||| |||||||||||||||
Sbjct: 17950 acgcaggcattcttcttccaagcgggatctcagg 17917
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>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness
            locus region
          Length = 160897

 Score =  133 bits (67), Expect = 8e-28
 Identities = 90/95 (94%), Gaps = 2/95 (2%)
 Strand = Plus / Minus

                                                                        
Query: 182  agagttccgcaa-cgtgccggattgtgaggacccgttcgactacatcggttcgtctgctt 240
            |||||||||||| |||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 4951 agagttccgcaagcgtgtcggat-gtgaggacccgttcgactacgtcggttcgtctgctt 4893

                                               
Query: 241  cacggaggcattcttcttctaagcgggatctcagg 275
            ||||||||||||||||||| |||||||||||||||
Sbjct: 4892 cacggaggcattcttcttccaagcgggatctcagg 4858
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>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence
          Length = 114996

 Score =  131 bits (66), Expect = 3e-27
 Identities = 87/94 (92%)
 Strand = Plus / Minus

                                                                          
Query: 182    agagttccgcaacgtgccggattgtgaggacccgttcgactacatcggttcgtctgcttc 241
              ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 104432 agagttccgcagcgtgccggattgtgaggacccgttcgactacgtcggttcgtctgcttc 104373

                                                
Query: 242    acggaggcattcttcttctaagcgggatctcagg 275
              ||||||   ||||||||| | |||||||||||||
Sbjct: 104372 acggagttgttcttcttccaggcgggatctcagg 104339
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>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence
          Length = 124050

 Score =  125 bits (63), Expect = 2e-25
 Identities = 89/95 (93%), Gaps = 2/95 (2%)
 Strand = Plus / Minus

                                                                         
Query: 182   agagttccgcaa-cgtgccggattgtgaggacccgttcgactacatcggttcgtctgctt 240
             |||||||||||| |||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 66481 agagttccgcaagcgtgtcggat-gtgaggacccgttcgactacgtcggttcgtctgctt 66423

                                                
Query: 241   cacggaggcattcttcttctaagcgggatctcagg 275
             ||||||||||||||||||| |||| ||||||||||
Sbjct: 66422 cacggaggcattcttcttccaagcaggatctcagg 66388
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>gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic protein 1 (TIP1), tonoplast
            intrinsic protein 2 (TIP2), and Rar1 (Rar1) genes,
            complete cds
          Length = 65979

 Score =  119 bits (60), Expect = 1e-23
 Identities = 69/72 (95%)
 Strand = Plus / Plus

                                                                        
Query: 204  tgtgaggacccgttcgactacatcggttcgtctgcttcacggaggcattcttcttctaag 263
            ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||
Sbjct: 9468 tgtgaggacccgttcgactacgtcggttcgtctgcttcacggaggcattcctcttccaag 9527

                        
Query: 264  cgggatctcagg 275
            ||||||||||||
Sbjct: 9528 cgggatctcagg 9539
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>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence
          Length = 439641

 Score =  111 bits (56), Expect = 3e-21
 Identities = 68/72 (94%)
 Strand = Plus / Plus

                                                                          
Query: 204    tgtgaggacccgttcgactacatcggttcgtctgcttcacggaggcattcttcttctaag 263
              ||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||| |||
Sbjct: 129974 tgtgaggacccgttcgactacgtcggttcgtgtgcttcacggagacattcttcttccaag 130033

                          
Query: 264    cgggatctcagg 275
              ||||||||||||
Sbjct: 130034 cgggatctcagg 130045



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 66/72 (91%)
 Strand = Plus / Plus

                                                                          
Query: 204    tgtgaggacccgttcgactacatcggttcgtctgcttcacggaggcattcttcttctaag 263
              ||||||||||| ||||||||| ||||||||| | |||||||||| ||||||||||| |||
Sbjct: 177307 tgtgaggacccattcgactacgtcggttcgtgttcttcacggagacattcttcttccaag 177366

                          
Query: 264    cgggatctcagg 275
              ||||||||||||
Sbjct: 177367 cgggatctcagg 177378



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 83/95 (87%), Gaps = 1/95 (1%)
 Strand = Plus / Plus

                                                                          
Query: 182    agagttccgcaa-cgtgccggattgtgaggacccgttcgactacatcggttcgtctgctt 240
              |||||| ||||| |||| |||| ||||||||||||||||||||| | ||||||||| |||
Sbjct: 325506 agagtttcgcaagcgtgtcggaatgtgaggacccgttcgactacgttggttcgtctactt 325565

                                                 
Query: 241    cacggaggcattcttcttctaagcgggatctcagg 275
              |||||||   ||||||||| ||| |||||||||||
Sbjct: 325566 cacggagttgttcttcttccaagtgggatctcagg 325600
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>gb|AF509775.1| Hordeum vulgare subsp. vulgare isolate RSB409A Rpg1 region, genomic
            sequence
          Length = 7321

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 82/95 (86%), Gaps = 1/95 (1%)
 Strand = Plus / Plus

                                                                        
Query: 182  agagttccgcaa-cgtgccggattgtgaggacccgttcgactacatcggttcgtctgctt 240
            |||||| ||||| |||| |||| |||||||| ||||||| |||| | |||||||||||||
Sbjct: 6001 agagtttcgcaagcgtgtcggaatgtgaggaaccgttcggctacgttggttcgtctgctt 6060

                                               
Query: 241  cacggaggcattcttcttctaagcgggatctcagg 275
            ||||||  | ||||||||| |||| ||||||||||
Sbjct: 6061 cacggattcgttcttcttccaagcaggatctcagg 6095
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>gb|AF509774.1| Hordeum vulgare subsp. vulgare isolate RSB347 Rpg1 region, genomic
           sequence
          Length = 3124

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 82/95 (86%), Gaps = 1/95 (1%)
 Strand = Plus / Plus

                                                                       
Query: 182 agagttccgcaa-cgtgccggattgtgaggacccgttcgactacatcggttcgtctgctt 240
           |||||| ||||| |||| |||| |||||||| ||||||| |||| | |||||||||||||
Sbjct: 772 agagtttcgcaagcgtgtcggaatgtgaggaaccgttcggctacgttggttcgtctgctt 831

                                              
Query: 241 cacggaggcattcttcttctaagcgggatctcagg 275
           ||||||  | ||||||||| |||| ||||||||||
Sbjct: 832 cacggattcgttcttcttccaagcaggatctcagg 866
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>gb|AY054380.1| Hordeum patagonicum clone HpaLTR-INS Sukkula retrotransposon long
            terminal repeat, complete sequence
          Length = 7731

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 65/77 (84%)
 Strand = Plus / Plus

                                                                        
Query: 199  cggattgtgaggacccgttcgactacatcggttcgtctgcttcacggaggcattcttctt 258
            |||| ||||||||  ||||||||||  | || |||||| |||||||||  | ||||||||
Sbjct: 2712 cggagtgtgaggattcgttcgactatgttggctcgtcttcttcacggattcgttcttctt 2771

                             
Query: 259  ctaagcgggatctcagg 275
            | |||||||||||||||
Sbjct: 2772 ccaagcgggatctcagg 2788
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>gb|AY054379.1| Hordeum murinum clone HmuLTR-INS Sukkula retrotransposon long
            terminal repeat, complete sequence
          Length = 7586

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Plus

                                                                        
Query: 199  cggattgtgaggacccgttcgactacatcggttcgtctgcttcacggaggcattcttctt 258
            |||| ||||||||  ||||||||||| | ||||||| | ||||||||   | ||||||||
Sbjct: 2510 cggagtgtgaggattcgttcgactacgttggttcgtttacttcacggtttcgttcttctt 2569

                          
Query: 259  ctaagcgggatctc 272
            | ||||||||||||
Sbjct: 2570 ccaagcgggatctc 2583
to top
>gb|AC020978.10| Homo sapiens chromosome 16 clone RP11-96D1, complete sequence
          Length = 164293

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 586   atctgaacaataaaacaagaaaat 609
             ||||||||||||||||||||||||
Sbjct: 22500 atctgaacaataaaacaagaaaat 22523
to top
>gb|AF411057.1|AF411057 Homo sapiens clone BAC_22606 CD28 antigen (CD28) gene, exons 1, 2 and
             3, and partial cds
          Length = 66887

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 625   gaaaaggaatgatctcatggaaa 647
             |||||||||||||||||||||||
Sbjct: 45720 gaaaaggaatgatctcatggaaa 45698
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>gb|AC125238.5| Homo sapiens BAC clone RP11-711C24 from 2, complete sequence
          Length = 196622

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 625    gaaaaggaatgatctcatggaaa 647
              |||||||||||||||||||||||
Sbjct: 102238 gaaaaggaatgatctcatggaaa 102216
to top
>gb|AF225899.1|AF225899 Homo sapiens PAC clone 219d7, complete sequence
          Length = 106539

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 625   gaaaaggaatgatctcatggaaa 647
             |||||||||||||||||||||||
Sbjct: 44878 gaaaaggaatgatctcatggaaa 44856
to top
>emb|AL353801.13| Human DNA sequence from clone RP11-285G1 on chromosome 10 Contains two
              novel genes, the gene for AD037 protein (AD037), the gene
              for a decidual protein induced by progesterone (DEPP), a
              novel gene (FLJ30567), the ZNF22 gene for zinc finger
              protein 22 (KOX 15), a novel gene and two CpG islands,
              complete sequence
          Length = 222490

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 587    tctgaacaataaaacaagaaaa 608
              ||||||||||||||||||||||
Sbjct: 182607 tctgaacaataaaacaagaaaa 182586
to top
>gb|AC123978.5| Papio anubis clone rp41-211d5, complete sequence
          Length = 180097

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 587   tctgaacaataaaacaagaaaa 608
             ||||||||||||||||||||||
Sbjct: 76766 tctgaacaataaaacaagaaaa 76745
to top
>dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome
          Length = 2694756

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 646     aacaatgggttttctctttgtt 667
               ||||||||||||||||||||||
Sbjct: 1389079 aacaatgggttttctctttgtt 1389058
to top
>gb|AF207760.1|AF207760 Hepatitis C virus strain MD19 complete genome
          Length = 9379

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 557  agctagtaggatggagaagaag 578
            ||||||||||||||||||||||
Sbjct: 8891 agctagtaggatggagaagaag 8870
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>ref|NM_186505.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 420

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 372 gcatgggctaattcctgctcg 392
           |||||||||||||||||||||
Sbjct: 287 gcatgggctaattcctgctcg 267
to top
>gb|AF326781.1| Triticum monococcum actin (ACT-1) gene, partial cds; putative chromosome
              condensation factor (CCF), putative resistance protein
              (RGA-2), putative resistance protein (RGA2) and putative
              nodulin-like-like protein (NLL) gene, complete cds; and
              retrotransposons Josephine, Angela-2, Angela-4, Heidi,
              Greti, Angela-3, Fatima, Erika-1, Angela-6, Angela-5,
              Barbara, Isabelle, Erika-2, and Claudia
          Length = 211009

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                       
Query: 203    ttgtgaggacccgttcgactacatcggttcgtctgcttcacggaggcattcttcttc 259
              ||||||||| |||||||||||| || ||| |||| ||||| |||  | |||||||||
Sbjct: 194975 ttgtgaggatccgttcgactacgtccgtttgtctacttcatggactcgttcttcttc 194919
to top
>emb|BX640428.1| Bordetella parapertussis strain 12822, complete genome; segment 6/14
          Length = 348525

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 115    cgctgcagccccagctcgcct 135
              |||||||||||||||||||||
Sbjct: 171971 cgctgcagccccagctcgcct 171951
to top
>gb|AC108681.2| Homo sapiens 3q BAC RP11-30O15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 29347

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 512   agcttttcaggagctccatgg 532
             |||||||||||||||||||||
Sbjct: 16378 agcttttcaggagctccatgg 16358
to top
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 465     tgattgggttgtttggattga 485
               |||||||||||||||||||||
Sbjct: 2195011 tgattgggttgtttggattga 2194991
to top
>gb|AY188331.1| Triticum monococcum DV92 chromosome 5AL BAC 231A16, complete sequence
          Length = 133625

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                      
Query: 203   ttgtgaggacccgttcgactacatcggttcgtctgcttcacggaggcattcttcttc 259
             ||||||||||||||||| |||| || ||| |||| ||||| |||  | |||||||||
Sbjct: 85873 ttgtgaggacccgttcgtctacgtccgtttgtcttcttcatggactcgttcttcttc 85817
to top
>ref|XM_395108.2| PREDICTED: Apis mellifera similar to dynein heavy chain isotype 1B
           (LOC411639), mRNA
          Length = 11874

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 602 aagaaaatgcaattgaagttg 622
           |||||||||||||||||||||
Sbjct: 172 aagaaaatgcaattgaagttg 192
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 372     gcatgggctaattcctgctcg 392
               |||||||||||||||||||||
Sbjct: 6288988 gcatgggctaattcctgctcg 6288968
to top
>dbj|AP004002.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1116_C08
          Length = 102317

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 372   gcatgggctaattcctgctcg 392
             |||||||||||||||||||||
Sbjct: 39548 gcatgggctaattcctgctcg 39528
to top
>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome
          Length = 2616530

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 601    caagaaaatgcaattgaagtt 621
              |||||||||||||||||||||
Sbjct: 573825 caagaaaatgcaattgaagtt 573845
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>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome
          Length = 2499279

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 601    caagaaaatgcaattgaagtt 621
              |||||||||||||||||||||
Sbjct: 681592 caagaaaatgcaattgaagtt 681612
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>gb|AC159817.2| Mus musculus BAC clone RP23-228E8 from chromosome 9, complete
           sequence
          Length = 193445

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 615 tgaagttgcagaaaaggaat 634
           ||||||||||||||||||||
Sbjct: 281 tgaagttgcagaaaaggaat 300
to top
>gb|AC161587.2| Mus musculus BAC clone RP24-492G17 from chromosome 9, complete sequence
          Length = 176237

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 615    tgaagttgcagaaaaggaat 634
              ||||||||||||||||||||
Sbjct: 134260 tgaagttgcagaaaaggaat 134279
to top
>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome
          Length = 3481691

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 375     tgggctaattcctgctcgtcgtgt 398
               |||||||||||||||||| |||||
Sbjct: 1557359 tgggctaattcctgctcggcgtgt 1557382
to top
>gb|AC102090.14| Mus musculus chromosome 1, clone RP23-7I3, complete sequence
          Length = 183269

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 465   tgattgggttgtttggattg 484
             ||||||||||||||||||||
Sbjct: 38127 tgattgggttgtttggattg 38146
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>gb|AC130598.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0056I11,
              complete sequence
          Length = 145796

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 555    aaagctagtaggatggagaagaag 578
              ||||||||||||| ||||||||||
Sbjct: 122344 aaagctagtaggaaggagaagaag 122367
to top
>ref|XM_956688.1| Neurospora crassa OR74A hypothetical protein (NCU07892.1) partial
           mRNA
          Length = 432

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 658 tctctttgttcttggcatca 677
           ||||||||||||||||||||
Sbjct: 292 tctctttgttcttggcatca 273
to top
>ref|XM_328597.1| Neurospora crassa OR74A hypothetical protein (NCU07892.1) partial
           mRNA
          Length = 432

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 658 tctctttgttcttggcatca 677
           ||||||||||||||||||||
Sbjct: 292 tctctttgttcttggcatca 273
to top
>gb|AY809181.1| Schistosoma japonicum SJCHGC07897 protein mRNA, partial cds
          Length = 525

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 591 aacaataaaacaagaaaatg 610
           ||||||||||||||||||||
Sbjct: 240 aacaataaaacaagaaaatg 259
to top
>gb|AC092710.6| Mus musculus chromosome 13, clone RP23-5A19, complete sequence
          Length = 268129

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 648    caatgggttttctctttgtt 667
              ||||||||||||||||||||
Sbjct: 224979 caatgggttttctctttgtt 224998
to top
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 66      gtgccggatctggacgggagcaag 89
               |||||||||||||||| |||||||
Sbjct: 4879345 gtgccggatctggacgtgagcaag 4879322
to top
>gb|AC160458.4| Mus musculus chromosome 5, clone RP23-14C20, complete sequence
          Length = 253338

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 648    caatgggttttctctttgttcttg 671
              ||||||||||||||| ||||||||
Sbjct: 159059 caatgggttttctctgtgttcttg 159082
to top
>gb|AC161249.2| Mus musculus BAC clone RP24-541G2 from chromosome 13, complete sequence
          Length = 162934

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 648   caatgggttttctctttgtt 667
             ||||||||||||||||||||
Sbjct: 26463 caatgggttttctctttgtt 26482
to top
>emb|CT010576.9| Mouse DNA sequence from clone RP23-193B21 on chromosome 16, complete
             sequence
          Length = 208110

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   tcgctgcagccccagctcgc 133
             ||||||||||||||||||||
Sbjct: 17076 tcgctgcagccccagctcgc 17057
to top
>gb|AC006315.2| Homo sapiens PAC clone RP4-630F1 from 7, complete sequence
          Length = 127526

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 460   gagtgtgattgggttgtttg 479
             ||||||||||||||||||||
Sbjct: 62512 gagtgtgattgggttgtttg 62493
to top
>gb|AC133000.5| Rattus Norvegicus Strain CH230-62B6 BAC, BN/SsNHsd/MCW, complete sequence
          Length = 245581

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 667    tcttggcatcatcattatgg 686
              ||||||||||||||||||||
Sbjct: 113672 tcttggcatcatcattatgg 113691
to top
>emb|AL109935.39|HSJ1022P6 Human DNA sequence from clone RP5-1022P6 on chromosome 20 Contains the
             RPS18P1 gene for ribosomal protein S18 pseudogene 1, the
             gene for a novel protein (KIAA1434), an EIF4E (eukaryotic
             translation initiation factor 4E) pseudogene, three novel
             genes and two CpG islands, complete sequence
          Length = 178601

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 645   aaacaatgggttttctcttt 664
             ||||||||||||||||||||
Sbjct: 87079 aaacaatgggttttctcttt 87098
to top
>gb|AC101004.6| Mus musculus, clone RP23-79E5, complete sequence
          Length = 220468

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 648   caatgggttttctctttgttcttg 671
             ||||||||||||||| ||||||||
Sbjct: 16236 caatgggttttctctgtgttcttg 16259
to top
>emb|AL035457.13|HS1106N18 Human DNA sequence from clone RP5-1106N18 on chromosome 20q13.2-13.2
              Contains ESTs, STSs and GSSs, complete sequence
          Length = 142336

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 641    atggaaacaatgggttttctcttt 664
              ||||||| ||||||||||||||||
Sbjct: 107451 atggaaagaatgggttttctcttt 107428
to top
>emb|CR627485.10| Zebrafish DNA sequence from clone DKEY-203E10 in linkage group 7,
             complete sequence
          Length = 180774

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 595   ataaaacaagaaaatgcaat 614
             ||||||||||||||||||||
Sbjct: 74267 ataaaacaagaaaatgcaat 74248
to top
>emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete genome
          Length = 2414465

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 510     caagcttttcaggagctcca 529
               ||||||||||||||||||||
Sbjct: 2404222 caagcttttcaggagctcca 2404203
to top
>gb|AC010052.7| Drosophila melanogaster 3L BAC RP98-5G1 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 164941

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   ttttcattcccaatccaatt 331
             ||||||||||||||||||||
Sbjct: 13296 ttttcattcccaatccaatt 13315
to top
>gb|AC092052.2| Homo sapiens chromosome 3 clone RP11-329N16, complete sequence
          Length = 203204

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 594    aataaaacaagaaaatgcaa 613
              ||||||||||||||||||||
Sbjct: 176841 aataaaacaagaaaatgcaa 176822
to top
>gb|AC106871.5| Homo sapiens BAC clone RP11-361D14 from 4, complete sequence
          Length = 159123

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 371   ggcatgggctaattcctgct 390
             ||||||||||||||||||||
Sbjct: 92086 ggcatgggctaattcctgct 92067
to top
>gb|AC008125.9| Homo sapiens 12 BAC RPCI11-25E2 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 189286

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 546   agttggatcaaagctagtag 565
             ||||||||||||||||||||
Sbjct: 41501 agttggatcaaagctagtag 41520
to top
>gb|AC009878.9| Homo sapiens chromosome 15, clone RP11-345N11, complete sequence
          Length = 198372

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 166    tatctgctgcatctgaagag 185
              ||||||||||||||||||||
Sbjct: 108463 tatctgctgcatctgaagag 108482
to top
>gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, genomic sequence
          Length = 190469

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 56/68 (82%)
 Strand = Plus / Minus

                                                                        
Query: 205  gtgaggacccgttcgactacatcggttcgtctgcttcacggaggcattcttcttctaagc 264
            |||||||  |||||||||||||| ||| |||| ||||| |||  | |||||||||   ||
Sbjct: 1220 gtgaggattcgttcgactacatctgtttgtcttcttcatggactcgttcttcttccttgc 1161

                    
Query: 265  gggatctc 272
            ||||||||
Sbjct: 1160 gggatctc 1153
to top
>gb|AC154654.2| Mus musculus BAC clone RP24-262O15 from chromosome 16, complete
             sequence
          Length = 173200

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   tcgctgcagccccagctcgc 133
             ||||||||||||||||||||
Sbjct: 16677 tcgctgcagccccagctcgc 16696
to top
>gb|AC022603.5|AC022603 Homo sapiens chromosome 15, clone RP11-20B10, complete sequence
          Length = 153223

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 166   tatctgctgcatctgaagag 185
             ||||||||||||||||||||
Sbjct: 20332 tatctgctgcatctgaagag 20313
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 555     aaagctagtaggatggagaagaag 578
               ||||||||||||| ||||||||||
Sbjct: 1670184 aaagctagtaggaaggagaagaag 1670207
to top
>gb|AF323785.1|AF323785 Oryza sativa subsp. indica KNOX class homeodomain protein (Oskn2)
            gene, partial cds
          Length = 3589

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 555  aaagctagtaggatggagaagaag 578
            ||||||||||||| ||||||||||
Sbjct: 2456 aaagctagtaggaaggagaagaag 2433
to top
>gb|AC093083.4| Homo sapiens BAC clone RP11-558I16 from 2, complete sequence
          Length = 97512

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 459   tgagtgtgattgggttgttt 478
             ||||||||||||||||||||
Sbjct: 78858 tgagtgtgattgggttgttt 78839
to top
>gb|AC136926.4| Rattus Norvegicus Strain CH230-163A18 BAC, BN/SsNHsd/MCW, complete
              sequence
          Length = 214942

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 667    tcttggcatcatcattatgg 686
              ||||||||||||||||||||
Sbjct: 204741 tcttggcatcatcattatgg 204760
to top
>ref|XM_220197.3| PREDICTED: Rattus norvegicus zinc finger protein 13 (predicted)
           (Zfp13_predicted), mRNA
          Length = 1734

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 650 atgggttttctctttgttct 669
           ||||||||||||||||||||
Sbjct: 279 atgggttttctctttgttct 260
to top
>dbj|AK111878.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046I12, full
           insert sequence
          Length = 1785

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 555 aaagctagtaggatggagaagaag 578
           ||||||||||||| ||||||||||
Sbjct: 257 aaagctagtaggaaggagaagaag 234
to top
>gb|AF050180.1|AF050180 Oryza sativa strain Indica IR58 KNOX class homeodomain protein
           (Oskn2) mRNA, complete cds
          Length = 1521

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 555 aaagctagtaggatggagaagaag 578
           ||||||||||||| ||||||||||
Sbjct: 72  aaagctagtaggaaggagaagaag 49
to top
>gb|AE003549.4| Drosophila melanogaster chromosome 3L, section 36 of 83 of the complete
              sequence
          Length = 295143

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 312    ttttcattcccaatccaatt 331
              ||||||||||||||||||||
Sbjct: 245373 ttttcattcccaatccaatt 245392
to top
>dbj|AK112676.1| Ciona intestinalis cDNA, clone:cieg028i09, full insert sequence
          Length = 2240

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 591 aacaataaaacaagaaaatg 610
           ||||||||||||||||||||
Sbjct: 151 aacaataaaacaagaaaatg 170
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>dbj|AB028885.1| Oryza sativa mRNA for knotted1-type homeobox protein OSH71,
           complete cds
          Length = 1576

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 555 aaagctagtaggatggagaagaag 578
           ||||||||||||| ||||||||||
Sbjct: 52  aaagctagtaggaaggagaagaag 29
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>emb|AL592482.6| Mouse DNA sequence from clone RP23-220K2 on chromosome 1, complete
              sequence
          Length = 124174

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 465    tgattgggttgtttggattg 484
              ||||||||||||||||||||
Sbjct: 108492 tgattgggttgtttggattg 108511


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,099,042
Number of Sequences: 3902068
Number of extensions: 6099042
Number of successful extensions: 122219
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 121866
Number of HSP's gapped (non-prelim): 350
length of query: 690
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 667
effective length of database: 17,143,297,704
effective search space: 11434579568568
effective search space used: 11434579568568
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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