ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd12o04 |
|---|---|
| Clone Library Name | barley_pub |
>COI1_ARATH (O04197) Coronatine-insensitive protein 1 (F-box/LRR-repeat protein| 2) (AtFBL2) (COI-1) (AtCOI1) Length = 592 Score = 252 bits (644), Expect = 6e-67 Identities = 123/194 (63%), Positives = 151/194 (77%), Gaps = 4/194 (2%) Frame = +1 Query: 22 SIGTFCKKLYDFRLVLLDRQERITDLPLDNGARALLRGCTKLRRFALYLRPGGLSDVGLN 201 SIGT+ K L DFRLVLLDR+ERITDLPLDNG R+LL GC KLRRFA YLR GGL+D+GL+ Sbjct: 397 SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 Query: 202 YIGQHSGTIHYMLLGNVGQTDDGLISFAAGCRNLLKLELRSCCFSERALALAVLKMPSLR 381 YIGQ+S + +MLLG VG++D+GL+ F+ GC NL KLE+R CCFSERA+A AV K+PSLR Sbjct: 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLR 516 Query: 382 YVWVQGYRASQTGRDLMLMARPFWNIEFTP----PGTESAGRLMEDGEPCVDRQAQVLAY 549 Y+WVQGYRAS TG+DLM MARP+WNIE P P G + E ++ A +LAY Sbjct: 517 YLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIRE-----MEHPAHILAY 571 Query: 550 YSLSGRRSDCPQSV 591 YSL+G+R+DCP +V Sbjct: 572 YSLAGQRTDCPTTV 585
>TIR1_ARATH (Q570C0) TRANSPORT INHIBITOR RESPONSE 1 protein (F-box/LRR-repeat| protein 1) Length = 594 Score = 69.3 bits (168), Expect = 1e-11 Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 2/178 (1%) Frame = +1 Query: 55 FRLVLLDRQ--ERITDLPLDNGARALLRGCTKLRRFALYLRPGGLSDVGLNYIGQHSGTI 228 FRL +++ + + +T PLD G A++ C LRR +L G L+D YIG ++ + Sbjct: 402 FRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL---SGLLTDKVFEYIGTYAKKM 458 Query: 229 HYMLLGNVGQTDDGLISFAAGCRNLLKLELRSCCFSERALALAVLKMPSLRYVWVQGYRA 408 + + G +D G+ +GC +L KLE+R C F ++AL K+ ++R +W+ Sbjct: 459 EMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 Query: 409 SQTGRDLMLMARPFWNIEFTPPGTESAGRLMEDGEPCVDRQAQVLAYYSLSGRRSDCP 582 S L+ P N+E R D P +V Y +++G R D P Sbjct: 519 SFGACKLLGQKMPKLNVEVIDE------RGAPDSRPESCPVERVFIYRTVAGPRFDMP 570
>FXL20_RAT (Q9QZH7) F-box/LRR-repeat protein 20 (F-box and leucine-rich repeat| protein 20) (F-box/LRR-repeat protein 2-like) Length = 276 Score = 40.4 bits (93), Expect = 0.005 Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Frame = +1 Query: 109 NGARALLRGCTKLRRFALYLRP-GGLSDVGLNYIGQHSGTIHYMLLGNVGQ-TDDGLISF 282 +G +AL+RGC L+ AL+L+ L D L YIG H + + L Q TD+GLI+ Sbjct: 185 DGIQALVRGCGGLK--ALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITI 242 Query: 283 AAGCRNLLKLELRSC 327 GC L L C Sbjct: 243 CRGCHKLQSLCASGC 257
>FXL20_MOUSE (Q9CZV8) F-box/LRR-repeat protein 20 (F-box and leucine-rich repeat| protein 20) (F-box/LRR-repeat protein 2-like) Length = 436 Score = 40.4 bits (93), Expect = 0.005 Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Frame = +1 Query: 109 NGARALLRGCTKLRRFALYLRP-GGLSDVGLNYIGQHSGTIHYMLLGNVGQ-TDDGLISF 282 +G +AL+RGC L+ AL+L+ L D L YIG H + + L Q TD+GLI+ Sbjct: 185 DGIQALVRGCGGLK--ALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITI 242 Query: 283 AAGCRNLLKLELRSC 327 GC L L C Sbjct: 243 CRGCHKLQSLCASGC 257
>FXL20_HUMAN (Q96IG2) F-box/LRR-repeat protein 20 (F-box and leucine-rich repeat| protein 20) (F-box/LRR-repeat protein 2-like) Length = 436 Score = 40.4 bits (93), Expect = 0.005 Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Frame = +1 Query: 109 NGARALLRGCTKLRRFALYLRP-GGLSDVGLNYIGQHSGTIHYMLLGNVGQ-TDDGLISF 282 +G +AL+RGC L+ AL+L+ L D L YIG H + + L Q TD+GLI+ Sbjct: 185 DGIQALVRGCGGLK--ALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITI 242 Query: 283 AAGCRNLLKLELRSC 327 GC L L C Sbjct: 243 CRGCHKLQSLCASGC 257
>FBXL2_MOUSE (Q8BH16) F-box/LRR-repeat protein 2 (F-box and leucine-rich repeat| protein 2) Length = 423 Score = 38.1 bits (87), Expect = 0.024 Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 4/121 (3%) Frame = +1 Query: 112 GARALLRGCTKLRRFALYLRP-GGLSDVGLNYIGQHSGTIHYMLLGNVGQ-TDDGLISFA 285 G AL+RGC L+ AL LR L D L +I H + + L + + TDDG++ Sbjct: 173 GIEALVRGCRGLK--ALLLRGCTQLEDEALKHIQNHCHELVSLNLQSCSRITDDGVVQIC 230 Query: 286 AGCRNLLKLELRSCC-FSERALALAVLKMPSLRYVWVQGYRASQ-TGRDLMLMARPFWNI 459 GC L L L C ++ +L L P L+ ++ R S T L+AR + Sbjct: 231 RGCHRLQALCLSGCSNLTDASLTALGLNCPRLQV--LEAARCSHLTDAGFTLLARNCHEL 288 Query: 460 E 462 E Sbjct: 289 E 289 Score = 30.8 bits (68), Expect = 3.8 Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 1/103 (0%) Frame = +1 Query: 22 SIGTFCKKLYDFRLVLLDRQERITDLPLDNGARALLRGCTKLRRFALYLRPGGLSDVGLN 201 S+ TF + + + L+ +ITD + +L R C+KL+ L +++ L Sbjct: 95 SLKTFAQNCRNIEHLNLNGCTKITD----STCYSLSRFCSKLKHLDL-TSCVSVTNSSLK 149 Query: 202 YIGQHSGTIHYMLLGNVGQ-TDDGLISFAAGCRNLLKLELRSC 327 I + + Y+ L Q T +G+ + GCR L L LR C Sbjct: 150 GISEGCRNLEYLNLSWCDQITKEGIEALVRGCRGLKALLLRGC 192
>FBXL7_HUMAN (Q9UJT9) F-box/LRR-repeat protein 7 (F-box and leucine-rich repeat| protein 7) (F-box protein FBL6/FBL7) Length = 491 Score = 36.6 bits (83), Expect = 0.070 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 4/85 (4%) Frame = +1 Query: 85 RITDLPLDNGARALLRGCTKLRRFALYLRPGG---LSDVGLNYIGQHSGTIHYMLLGNVG 255 R+TD+ G R + + C+KLR YL G ++D G+ Y+ ++ + + +G Sbjct: 362 RVTDV----GIRYVAKYCSKLR----YLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCP 413 Query: 256 QTDD-GLISFAAGCRNLLKLELRSC 327 D GL A C NL +L L+SC Sbjct: 414 LVSDTGLECLALNCFNLKRLSLKSC 438
>YKK7_CAEEL (P34284) Hypothetical F-box/LRR-repeat protein C02F5.7| Length = 466 Score = 35.4 bits (80), Expect = 0.15 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Frame = +1 Query: 85 RITDLPLDNGARALLRGCTKLRRFALYLRPGGLSDVGLNYIGQHSGTIHYM-LLGNVGQT 261 ++TD+ + N + G T L + +SD L +GQHS + + L G Sbjct: 265 QLTDITVQN----IANGATALEYLCMS-NCNQISDRSLVSLGQHSHNLKVLELSGCTLLG 319 Query: 262 DDGLISFAAGCRNLLKLELRSC 327 D+G I A GCR L +L++ C Sbjct: 320 DNGFIPLARGCRQLERLDMEDC 341
>FXL17_HUMAN (Q9UF56) F-box/LRR-repeat protein 17 (F-box and leucine-rich repeat| protein 17) (F-box only protein 13) (Fragment) Length = 370 Score = 35.0 bits (79), Expect = 0.20 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 1/75 (1%) Frame = +1 Query: 106 DNGARALLRGCTKLRRFALYLRPGGLSDVGLNYIGQHSGTIHYMLLGNVGQ-TDDGLISF 282 DNG L C L R+ Y R LSD + + H + + +GN + TD+GL Sbjct: 70 DNGVCVLAFKCPGLLRYTAY-RCKQLSDTSIIAVASHCPLLQKVHVGNQDKLTDEGLKQL 128 Query: 283 AAGCRNLLKLELRSC 327 + CR L + C Sbjct: 129 GSKCRELKDIHFGQC 143
>FBXL2_HUMAN (Q9UKC9) F-box/LRR-repeat protein 2 (F-box and leucine-rich repeat| protein 2) (F-box protein FBL2/FBL3) Length = 423 Score = 34.7 bits (78), Expect = 0.26 Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 4/122 (3%) Frame = +1 Query: 109 NGARALLRGCTKLRRFALYLRP-GGLSDVGLNYIGQHSGTIHYMLLGNVGQ-TDDGLISF 282 +G AL+RGC L+ AL LR L D L +I + + + L + + TD+G++ Sbjct: 172 DGIEALVRGCRGLK--ALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQI 229 Query: 283 AAGCRNLLKLELRSCC-FSERALALAVLKMPSLRYVWVQGYRASQ-TGRDLMLMARPFWN 456 GC L L L C ++ +L L P L+ ++ R S T L+AR Sbjct: 230 CRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQI--LEAARCSHLTDAGFTLLARNCHE 287 Query: 457 IE 462 +E Sbjct: 288 LE 289 Score = 32.7 bits (73), Expect = 1.0 Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 1/103 (0%) Frame = +1 Query: 22 SIGTFCKKLYDFRLVLLDRQERITDLPLDNGARALLRGCTKLRRFALYLRPGGLSDVGLN 201 S+ TF + + + L+ +ITD + +L R C+KL+ L +++ L Sbjct: 95 SLKTFAQNCRNIEHLNLNGCTKITD----STCYSLSRFCSKLKHLDL-TSCVSITNSSLK 149 Query: 202 YIGQHSGTIHYMLLGNVGQ-TDDGLISFAAGCRNLLKLELRSC 327 I + + Y+ L Q T DG+ + GCR L L LR C Sbjct: 150 GISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGC 192
>FXL17_MOUSE (Q9QZN1) F-box/LRR-repeat protein 17 (F-box and leucine-rich repeat| protein 17) (F-box only protein 13) (Fragment) Length = 462 Score = 33.5 bits (75), Expect = 0.59 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 2/99 (2%) Frame = +1 Query: 106 DNGARALLRGCTKLRRFALYLRPGGLSDVGLNYIGQHSGTIHYMLLGNVGQ-TDDGLISF 282 D+G L C L R+ Y R LSD + + H + + +GN + TD+GL Sbjct: 162 DSGVCVLAFKCPGLLRYTAY-RCKQLSDTSIIAVASHCPLLQKVHVGNQDKLTDEGLKQL 220 Query: 283 AAGCRNLLKLELRSCC-FSERALALAVLKMPSLRYVWVQ 396 + CR L + C S+ + + L+ +++Q Sbjct: 221 GSRCRELKDIHFGQCYKISDEGMIVIAKSCLKLQRIYMQ 259
>LRC29_HUMAN (Q8WV35) Leucine-rich repeat-containing protein 29| (F-box/LRR-repeat protein 9) (F-box and leucine-rich repeat protein 9) (F-box protein FBL9) Length = 223 Score = 33.5 bits (75), Expect = 0.59 Identities = 33/107 (30%), Positives = 45/107 (42%), Gaps = 8/107 (7%) Frame = +1 Query: 31 TFCKKLYDFRLV-----LLDRQERITDLP--LDNGARALLRGCTKLRRFALYLRPGGLSD 189 T C KL D L L RQ ++ LP DNG A+ RGC L AL LSD Sbjct: 83 TACSKLTDASLAKVLQFLQLRQLSLSLLPELTDNGLVAVARGCPSLEHLAL-SHCSRLSD 141 Query: 190 VGLNYIGQHSGTIHYMLLGNVGQ-TDDGLISFAAGCRNLLKLELRSC 327 G + ++ L + Q + L + CR L L++ +C Sbjct: 142 KGWAQAASSWPRLQHLNLSSCSQLIEQTLDAIGQACRQLRVLDVATC 188 Score = 30.0 bits (66), Expect = 6.5 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = +1 Query: 259 TDDGLISFAAGCRNLLKLELRSCC-FSERALALAVLKMPSLRYV 387 TD+GL++ A GC +L L L C S++ A A P L+++ Sbjct: 114 TDNGLVAVARGCPSLEHLALSHCSRLSDKGWAQAASSWPRLQHL 157
>V70K_TYMV (P10357) 69 kDa protein| Length = 628 Score = 32.7 bits (73), Expect = 1.0 Identities = 24/67 (35%), Positives = 33/67 (49%) Frame = -3 Query: 553 SSMQVPELAYQHRAPHLPSADPRSPCREA*TQCSRRALP*A*GRGQFERLCSPAPIRTSE 374 S +Q P YQ +PH P+ P S ++A Q R G ERL PA +RTSE Sbjct: 311 SRLQRPVHLYQS-SPHTPNFRPSSIRKDALLQTGPRL-------GHLERLGQPANLRTSE 362 Query: 373 KAFSVRR 353 ++ +R Sbjct: 363 RSPPTKR 369
>UREE_ACTPL (O54422) Urease accessory protein ureE| Length = 187 Score = 31.6 bits (70), Expect = 2.2 Identities = 20/60 (33%), Positives = 26/60 (43%) Frame = +3 Query: 330 LQRAGFGPRRTENAFSEVRMGAGLQSLSNWPRPHAHGKALLEH*VYASRHGERGSADGRW 509 LQ AGFGP++ E R+ L++ S H+HG H HG DG W Sbjct: 135 LQAAGFGPQKAER-----RLSQALRANSAQGHGHSHG-----HSHSHDHHGYHHHGDGNW 184
>MURC_DESVH (P61678) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)| (UDP-N-acetylmuramoyl-L-alanine synthetase) Length = 454 Score = 30.4 bits (67), Expect = 5.0 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +1 Query: 106 DNGARALLRGCTKLRRFALYLRPGGLSDVGLNYIGQHS 219 DN RA + C + F ++LR G L +V L G+H+ Sbjct: 240 DNALRAEVTSCAETSVFTVFLRGGRLGEVHLGQPGRHN 277
>V70K_TYMVA (P20131) 69 kDa protein| Length = 628 Score = 30.0 bits (66), Expect = 6.5 Identities = 29/83 (34%), Positives = 36/83 (43%), Gaps = 1/83 (1%) Frame = -3 Query: 586 TAGSPTSSH*GSSMQVPELAYQHRAPHLPSADPRSPCREA*TQCSRRALP*A*GRGQFER 407 TA PT S +Q P +Q PH P P ++A Q R G ER Sbjct: 302 TASRPTGPP--SRLQRPVHLHQS-GPHTPDFRPSGIRKDAFLQTGPRL-------GHLER 351 Query: 406 LCSPAPIRTSEKAFSV-RRGPKP 341 L A +RTSE+ S RR P+P Sbjct: 352 LGQSADLRTSERTPSTKRRLPRP 374
>ZFH2_DROME (P28167) Zinc finger protein 2 (Zinc finger homeodomain protein 2)| Length = 3005 Score = 30.0 bits (66), Expect = 6.5 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = -3 Query: 619 CTVTQDTEEQQTAGSPTSSH*GSSMQVPELAYQHRAPHLPSADPRSPC 476 C + + QQ + SP+SSH S +P+L Q + P RSPC Sbjct: 442 CKTCELLDIQQRSKSPSSSHHQFSQSLPQLQIQSQPQQTPH---RSPC 486
>DHE4_GIBFU (Q96VJ7) NADP-specific glutamate dehydrogenase (EC 1.4.1.4)| (NADP-GDH) (NADP-dependent glutamate dehydrogenase) Length = 451 Score = 30.0 bits (66), Expect = 6.5 Identities = 18/55 (32%), Positives = 27/55 (49%) Frame = +3 Query: 354 RRTENAFSEVRMGAGLQSLSNWPRPHAHGKALLEH*VYASRHGERGSADGRWGAL 518 R+ N + V G GL + RP A G L+ + Y +H RG+ +G+ AL Sbjct: 170 RKFANRWEGVLTGKGLSWGGSLIRPEATGYGLVYYVEYMLKHANRGTFEGKRVAL 224 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 105,399,403 Number of Sequences: 219361 Number of extensions: 2361023 Number of successful extensions: 5859 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 5628 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5847 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6427774254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
