ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd12o03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC107085.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1764_D01, complete sequence Length = 164709 Score = 149 bits (75), Expect = 1e-32 Identities = 105/115 (91%) Strand = Plus / Plus Query: 201 ggcggcgtcggcgggttcttcgactggtaccagtcgtacccggcgctccggccgctcctc 260 ||||||| ||||| ||||||||||||||||||| ||||||||||||| |||||||| ||| Sbjct: 104432 ggcggcggcggcgcgttcttcgactggtaccaggcgtacccggcgctgcggccgctgctc 104491 Query: 261 cgcgcctgcgtgcccgcctcctcccgcgtcctcatgctcggctgcggcaactccc 315 |||||| || | |||||||||||||| |||||||||||||| ||||||||||||| Sbjct: 104492 cgcgcccgcctccccgcctcctcccgggtcctcatgctcgggtgcggcaactccc 104546 Score = 77.8 bits (39), Expect = 4e-11 Identities = 93/111 (83%) Strand = Plus / Plus Query: 319 tgtcggaggacatggtaaaggatggttaccagaacatagtaaacattgacatctcatccg 378 |||||||||||||||| |||||||| ||| || | |||||||| | ||||| ||||||| Sbjct: 104766 tgtcggaggacatggtgaaggatgggtacgaggaggtagtaaacgtggacatttcatccg 104825 Query: 379 ttgtaatcgagcatatgaaagagaaacacatggatatcccacagcttacat 429 | || || ||||| |||| ||||||||| | ||||| ||||||||||||| Sbjct: 104826 tagtcattgagcagatgagggagaaacacgttgatattccacagcttacat 104876 Score = 73.8 bits (37), Expect = 6e-10 Identities = 40/41 (97%) Strand = Plus / Plus Query: 141 gacttcggcgccgccgcctactgggacgcccgctactcctc 181 |||| |||||||||||||||||||||||||||||||||||| Sbjct: 104360 gactacggcgccgccgcctactgggacgcccgctactcctc 104400 Score = 69.9 bits (35), Expect = 9e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 518 gtgtggcgatgatgcccctcatggtgcttacaaaatgctaacagaagtagcaagg 572 ||||||||||||||| |||| |||||||| |||||||||| ||||||| |||||| Sbjct: 105309 gtgtggcgatgatgctcctcttggtgcttccaaaatgctagcagaagtggcaagg 105363
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 149 bits (75), Expect = 1e-32 Identities = 105/115 (91%) Strand = Plus / Plus Query: 201 ggcggcgtcggcgggttcttcgactggtaccagtcgtacccggcgctccggccgctcctc 260 ||||||| ||||| ||||||||||||||||||| ||||||||||||| |||||||| ||| Sbjct: 18937054 ggcggcggcggcgcgttcttcgactggtaccaggcgtacccggcgctgcggccgctgctc 18937113 Query: 261 cgcgcctgcgtgcccgcctcctcccgcgtcctcatgctcggctgcggcaactccc 315 |||||| || | |||||||||||||| |||||||||||||| ||||||||||||| Sbjct: 18937114 cgcgcccgcctccccgcctcctcccgggtcctcatgctcgggtgcggcaactccc 18937168 Score = 77.8 bits (39), Expect = 4e-11 Identities = 93/111 (83%) Strand = Plus / Plus Query: 319 tgtcggaggacatggtaaaggatggttaccagaacatagtaaacattgacatctcatccg 378 |||||||||||||||| |||||||| ||| || | |||||||| | ||||| ||||||| Sbjct: 18937388 tgtcggaggacatggtgaaggatgggtacgaggaggtagtaaacgtggacatttcatccg 18937447 Query: 379 ttgtaatcgagcatatgaaagagaaacacatggatatcccacagcttacat 429 | || || ||||| |||| ||||||||| | ||||| ||||||||||||| Sbjct: 18937448 tagtcattgagcagatgagggagaaacacgttgatattccacagcttacat 18937498 Score = 73.8 bits (37), Expect = 6e-10 Identities = 40/41 (97%) Strand = Plus / Plus Query: 141 gacttcggcgccgccgcctactgggacgcccgctactcctc 181 |||| |||||||||||||||||||||||||||||||||||| Sbjct: 18936982 gactacggcgccgccgcctactgggacgcccgctactcctc 18937022 Score = 69.9 bits (35), Expect = 9e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 518 gtgtggcgatgatgcccctcatggtgcttacaaaatgctaacagaagtagcaagg 572 ||||||||||||||| |||| |||||||| |||||||||| ||||||| |||||| Sbjct: 18937931 gtgtggcgatgatgctcctcttggtgcttccaaaatgctagcagaagtggcaagg 18937985
>dbj|AK063603.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-C06, full insert sequence Length = 614 Score = 139 bits (70), Expect = 1e-29 Identities = 148/174 (85%) Strand = Plus / Plus Query: 399 gagaaacacatggatatcccacagcttacatatatgcagttggatgtcagagatatgagc 458 ||||||||| | ||||| ||||||||||||||| | ||| ||||||| || || ||||| Sbjct: 17 gagaaacacgttgatattccacagcttacatatttccagatggatgttagggacatgagt 76 Query: 459 ttctttggggatggatcatttgattgtatcatcgacaaaggaaccttggatgctatgatg 518 || ||||| |||||| |||| |||||| || | || ||||| || ||||| ||||||||| Sbjct: 77 ttgtttggtgatggaacattcgattgtgtccttgataaaggtacattggacgctatgatg 136 Query: 519 tgtggcgatgatgcccctcatggtgcttacaaaatgctaacagaagtagcaagg 572 |||||||||||||| |||| |||||||| |||||||||| ||||||| |||||| Sbjct: 137 tgtggcgatgatgctcctcttggtgcttccaaaatgctagcagaagtggcaagg 190
>emb|AJ628157.1| Ononis spinosa subsp. procurrens microsatellite DNA, clone di17 Length = 452 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Plus Query: 432 atgcagttggatgtcagagatatgagcttcttt 464 |||||| |||||||||| ||||||||||||||| Sbjct: 120 atgcagatggatgtcagggatatgagcttcttt 152
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Minus Query: 188 caccggcggcaagggcggcgtcggc 212 ||||||||||||||||||||||||| Sbjct: 750450 caccggcggcaagggcggcgtcggc 750426 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 cggcggcaagggcggcgtcg 210 |||||||||||||||||||| Sbjct: 3018183 cggcggcaagggcggcgtcg 3018164
>ref|NM_115955.4| Arabidopsis thaliana S-adenosylmethionine-dependent methyltransferase/ catalytic/ methyltransferase AT3G60910 mRNA, complete cds Length = 976 Score = 48.1 bits (24), Expect = 0.032 Identities = 48/56 (85%) Strand = Plus / Plus Query: 288 gtcctcatgctcggctgcggcaactcccttctgtcggaggacatggtaaaggatgg 343 ||||||||| | ||||| ||||||||||| |||| ||||| ||||| |||||||| Sbjct: 184 gtcctcatggttggctgtggcaactccctgatgtcagaggatatggtgaaggatgg 239
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 48.1 bits (24), Expect = 0.032 Identities = 24/24 (100%) Strand = Plus / Plus Query: 191 cggcggcaagggcggcgtcggcgg 214 |||||||||||||||||||||||| Sbjct: 842823 cggcggcaagggcggcgtcggcgg 842846 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 188 caccggcggcaagggcggcgtcggc 212 |||||||||||||||||||| |||| Sbjct: 1572339 caccggcggcaagggcggcgacggc 1572315 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 190 ccggcggcaagggcggcgtcggcgg 214 |||||||||| |||||||||||||| Sbjct: 1212947 ccggcggcaacggcggcgtcggcgg 1212971 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 cggcggcaagggcggcgtcggcgg 214 |||||||||||||||| ||||||| Sbjct: 3729785 cggcggcaagggcggcttcggcgg 3729762
>gb|AY122999.1| Arabidopsis thaliana unknown protein (At3g60910) mRNA, complete cds Length = 790 Score = 48.1 bits (24), Expect = 0.032 Identities = 48/56 (85%) Strand = Plus / Plus Query: 288 gtcctcatgctcggctgcggcaactcccttctgtcggaggacatggtaaaggatgg 343 ||||||||| | ||||| ||||||||||| |||| ||||| ||||| |||||||| Sbjct: 157 gtcctcatggttggctgtggcaactccctgatgtcagaggatatggtgaaggatgg 212
>gb|AY080676.1| Arabidopsis thaliana unknown protein (At3g60910) mRNA, complete cds Length = 980 Score = 48.1 bits (24), Expect = 0.032 Identities = 48/56 (85%) Strand = Plus / Plus Query: 288 gtcctcatgctcggctgcggcaactcccttctgtcggaggacatggtaaaggatgg 343 ||||||||| | ||||| ||||||||||| |||| ||||| ||||| |||||||| Sbjct: 171 gtcctcatggttggctgtggcaactccctgatgtcagaggatatggtgaaggatgg 226
>emb|BX842574.1| Mycobacterium tuberculosis H37Rv complete genome; segment 3/13 Length = 349564 Score = 48.1 bits (24), Expect = 0.032 Identities = 24/24 (100%) Strand = Plus / Plus Query: 191 cggcggcaagggcggcgtcggcgg 214 |||||||||||||||||||||||| Sbjct: 156409 cggcggcaagggcggcgtcggcgg 156432
>emb|BX248336.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 3/14 Length = 320050 Score = 48.1 bits (24), Expect = 0.032 Identities = 24/24 (100%) Strand = Plus / Plus Query: 191 cggcggcaagggcggcgtcggcgg 214 |||||||||||||||||||||||| Sbjct: 175872 cggcggcaagggcggcgtcggcgg 175895
>emb|BX825776.1|CNS0A7J3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL61ZH11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 964 Score = 48.1 bits (24), Expect = 0.032 Identities = 48/56 (85%) Strand = Plus / Plus Query: 288 gtcctcatgctcggctgcggcaactcccttctgtcggaggacatggtaaaggatgg 343 ||||||||| | ||||| ||||||||||| |||| ||||| ||||| |||||||| Sbjct: 177 gtcctcatggttggctgtggcaactccctgatgtcagaggatatggtgaaggatgg 232
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 48.1 bits (24), Expect = 0.032 Identities = 24/24 (100%) Strand = Plus / Minus Query: 191 cggcggcaagggcggcgtcggcgg 214 |||||||||||||||||||||||| Sbjct: 770915 cggcggcaagggcggcgtcggcgg 770892
>gb|BT012717.1| Lycopersicon esculentum clone 113603R, mRNA sequence Length = 1666 Score = 46.1 bits (23), Expect = 0.13 Identities = 38/43 (88%) Strand = Plus / Plus Query: 439 tggatgtcagagatatgagcttctttggggatggatcatttga 481 ||||||||||||||||||| |||||| |||| ||||||||| Sbjct: 483 tggatgtcagagatatgagtttctttcctgatgaatcatttga 525
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 282 tcccgcgtcctcatgctcggctgcggc 308 ||||||||||||||| ||||||||||| Sbjct: 27582354 tcccgcgtcctcatgatcggctgcggc 27582380
>dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0047B07 Length = 157797 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 282 tcccgcgtcctcatgctcggctgcggc 308 ||||||||||||||| ||||||||||| Sbjct: 39347 tcccgcgtcctcatgatcggctgcggc 39373
>dbj|AK099536.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013032A06, full insert sequence Length = 1598 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 282 tcccgcgtcctcatgctcggctgcggc 308 ||||||||||||||| ||||||||||| Sbjct: 333 tcccgcgtcctcatgatcggctgcggc 359
>ref|XM_546216.2| PREDICTED: Canis familiaris similar to G protein-regulated inducer of neurite outgrowth 1 (LOC489100), mRNA Length = 1320 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Minus Query: 263 cgcctgcgtgcccgcctcctcccgcg 288 ||||||||||||||| |||||||||| Sbjct: 1080 cgcctgcgtgcccgcgtcctcccgcg 1055
>dbj|AB026648.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MLJ15 Length = 43481 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 470 tggatcatttgattgtatcatc 491 |||||||||||||||||||||| Sbjct: 39583 tggatcatttgattgtatcatc 39562
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 191 cggcggcaagggcggcgtcggc 212 |||||||||||||||||||||| Sbjct: 67868 cggcggcaagggcggcgtcggc 67889 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 ggcggcaagggcggcgtcgg 211 |||||||||||||||||||| Sbjct: 2798258 ggcggcaagggcggcgtcgg 2798277
>gb|AC114822.7| Mus musculus BAC clone RP23-113A12 from 2, complete sequence Length = 209762 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 88 cgagcgagagaggtgagagaccaag 112 ||||||||||||| ||||||||||| Sbjct: 95820 cgagcgagagaggagagagaccaag 95796
>emb|BX842576.1| Mycobacterium tuberculosis H37Rv complete genome; segment 5/13 Length = 348264 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 188 caccggcggcaagggcggcgtcggc 212 |||||||||||||||||||| |||| Sbjct: 189438 caccggcggcaagggcggcgacggc 189414
>emb|BX842575.1| Mycobacterium tuberculosis H37Rv complete genome; segment 4/13 Length = 349306 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 190 ccggcggcaagggcggcgtcggcgg 214 |||||||||| |||||||||||||| Sbjct: 179004 ccggcggcaacggcggcgtcggcgg 179028
>emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete genome; segment 14/16 Length = 346287 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 190 ccggcggcaagggcggcgtcggcgg 214 |||||||| |||||||||||||||| Sbjct: 301718 ccggcggccagggcggcgtcggcgg 301694
>emb|BX640435.1| Bordetella parapertussis strain 12822, complete genome; segment 13/14 Length = 346259 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 190 ccggcggcaagggcggcgtcggcgg 214 |||||||| |||||||||||||||| Sbjct: 220604 ccggcggccagggcggcgtcggcgg 220580
>emb|BX640412.1| Bordetella pertussis strain Tohama I, complete genome; segment 2/12 Length = 348171 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 190 ccggcggcaagggcggcgtcggcgg 214 |||||||| |||||||||||||||| Sbjct: 28099 ccggcggccagggcggcgtcggcgg 28123
>emb|BX248338.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 5/14 Length = 299450 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 188 caccggcggcaagggcggcgtcggc 212 |||||||||||||||||||| |||| Sbjct: 254560 caccggcggcaagggcggcgacggc 254536
>emb|BX248337.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 4/14 Length = 327650 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 190 ccggcggcaagggcggcgtcggcgg 214 |||||||||| |||||||||||||| Sbjct: 227151 ccggcggcaacggcggcgtcggcgg 227175
>emb|AL583918.1|MLEPRTN2 Mycobacterium leprae strain TN complete genome; segment 2/10 Length = 344050 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 aaggatgggcggcggcaacgg 130 ||||||||||||||||||||| Sbjct: 22156 aaggatgggcggcggcaacgg 22176
>emb|AL023514.1|MLCB4 Mycobacterium leprae cosmid B4 Length = 36310 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 aaggatgggcggcggcaacgg 130 ||||||||||||||||||||| Sbjct: 29972 aaggatgggcggcggcaacgg 29992
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 188 caccggcggcaagggcggcgtcggc 212 |||| |||||||||||||||||||| Sbjct: 2024098 caccagcggcaagggcggcgtcggc 2024122
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 189 accggcggcaagggcggcgtcggcg 213 ||||||| ||||||||||||||||| Sbjct: 4051475 accggcgccaagggcggcgtcggcg 4051451
>gb|AE004575.1| Pseudomonas aeruginosa PAO1, section 136 of 529 of the complete genome Length = 10679 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 192 ggcggcaagggcggcgtcggc 212 ||||||||||||||||||||| Sbjct: 1549 ggcggcaagggcggcgtcggc 1569
>gb|AF133657.1|AF133657 Pseudomonas aeruginosa flagellar number regulator (fleN) gene, complete cds Length = 1038 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 192 ggcggcaagggcggcgtcggc 212 ||||||||||||||||||||| Sbjct: 244 ggcggcaagggcggcgtcggc 264
>emb|BX293551.11| Mouse DNA sequence from clone RP23-107O21 on chromosome 2, complete sequence Length = 75604 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 88 cgagcgagagaggtgagagaccaag 112 ||||||||||||| ||||||||||| Sbjct: 73434 cgagcgagagaggagagagaccaag 73410
>gb|L10677.1|MSG39L Mycobacterium leprae DNA sequence from 39L region Length = 1796 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 aaggatgggcggcggcaacgg 130 ||||||||||||||||||||| Sbjct: 1066 aaggatgggcggcggcaacgg 1046
>gb|AC161580.12| Mus musculus chromosome 3, clone RP23-422D10, complete sequence Length = 224193 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 387 gagcatatgaaagagaaacacatg 410 |||||||||||| ||||||||||| Sbjct: 193494 gagcatatgaaaaagaaacacatg 193517 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 387 gagcatatgaaagagaaacacatg 410 |||||||||||| ||||||||||| Sbjct: 160894 gagcatatgaaaaagaaacacatg 160917 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 387 gagcatatgaaagagaaacacatg 410 |||||||||||| ||||||||||| Sbjct: 128282 gagcatatgaaaaagaaacacatg 128305 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 387 gagcatatgaaagagaaacacatg 410 |||||||||||| ||||||||||| Sbjct: 95615 gagcatatgaaaaagaaacacatg 95638
>ref|NM_196788.1| Oryza sativa (japonica cultivar-group) putative glycine-rich protein (OSJNBa0068N06.3), mRNA Length = 1080 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 191 cggcggcaagggcggcgtcggcgg 214 ||||||||||||||||| |||||| Sbjct: 717 cggcggcaagggcggcggcggcgg 740
>gb|AC151473.3| Mus musculus BAC clone RP24-492O15 from chromosome 17, complete sequence Length = 128797 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 535 ctcatggtgcttacaaaatg 554 |||||||||||||||||||| Sbjct: 22741 ctcatggtgcttacaaaatg 22722
>gb|AC010848.14| Drosophila melanogaster clone BACR20N11, complete sequence Length = 175978 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 cggcggcaagggcggcgtcggcgg 214 ||||||||| |||||||||||||| Sbjct: 76078 cggcggcaatggcggcgtcggcgg 76055
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 gcggcaagggcggcgtcggc 212 |||||||||||||||||||| Sbjct: 2363637 gcggcaagggcggcgtcggc 2363656
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 190 ccggcggcaagggcggcgtcggcg 213 |||||| ||||||||||||||||| Sbjct: 340950 ccggcgccaagggcggcgtcggcg 340927
>gb|AC024844.1| Caenorhabditis elegans cosmid Y65B4A, complete sequence Length = 51250 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 cgcctgcgtgcccgcctcct 282 |||||||||||||||||||| Sbjct: 48134 cgcctgcgtgcccgcctcct 48153
>ref|XM_911199.2| PREDICTED: Mus musculus RIKEN cDNA 1810008N23 gene (1810008N23Rik), mRNA Length = 2840 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 387 gagcatatgaaagagaaacacatg 410 |||||||||||| ||||||||||| Sbjct: 863 gagcatatgaaaaagaaacacatg 840
>gb|AC125398.4| Mus musculus BAC clone RP24-217G23 from chromosome 18, complete sequence Length = 166948 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 gaaagagaaacacatggata 414 |||||||||||||||||||| Sbjct: 78147 gaaagagaaacacatggata 78166
>gb|AC122008.4| Mus musculus BAC clone RP24-344F8 from chromosome 3, complete sequence Length = 209378 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 387 gagcatatgaaagagaaacacatg 410 |||||||||||| ||||||||||| Sbjct: 165731 gagcatatgaaaaagaaacacatg 165708 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 387 gagcatatgaaagagaaacacatg 410 |||||||||||| ||||||||||| Sbjct: 133064 gagcatatgaaaaagaaacacatg 133041 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 387 gagcatatgaaagagaaacacatg 410 |||||||||||| ||||||||||| Sbjct: 100452 gagcatatgaaaaagaaacacatg 100429 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 387 gagcatatgaaagagaaacacatg 410 |||||||||||| ||||||||||| Sbjct: 67852 gagcatatgaaaaagaaacacatg 67829 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 387 gagcatatgaaagagaaacacatg 410 |||||||||||| ||||||||||| Sbjct: 35247 gagcatatgaaaaagaaacacatg 35224 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 387 gagcatatgaaagagaaacacatg 410 |||||||||||| ||||||||||| Sbjct: 2644 gagcatatgaaaaagaaacacatg 2621
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 190 ccggcggcaagggcggcgtcggcg 213 |||||| ||||||||||||||||| Sbjct: 432115 ccggcgccaagggcggcgtcggcg 432092
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 189 accggcggcaagggcggcgtcggc 212 ||||||||||||||||||| |||| Sbjct: 211299 accggcggcaagggcggcggcggc 211322
>gb|AC144717.1| Zea mays cultivar B73 chromosome 4S sequenced fragment from BAC ZMMBBb282F18, which containing the 22 kDa gene copy of azs22.16 (floury2), complete sequence Length = 14273 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 gcggcgtcggcgggttcttc 221 |||||||||||||||||||| Sbjct: 12181 gcggcgtcggcgggttcttc 12162
>emb|BX842582.1| Mycobacterium tuberculosis H37Rv complete genome; segment 11/13 Length = 349563 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 cggcggcaagggcggcgtcggcgg 214 |||||||||||||||| ||||||| Sbjct: 269798 cggcggcaagggcggcttcggcgg 269775
>emb|BX248345.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 12/14 Length = 308050 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 cggcggcaagggcggcgtcggcgg 214 |||||||||||||||| ||||||| Sbjct: 248156 cggcggcaagggcggcttcggcgg 248133
>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29 Length = 296500 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 200 gggcggcgtcggcgggttcttcga 223 ||||||||||||||| |||||||| Sbjct: 2141 gggcggcgtcggcggcttcttcga 2164
>gb|AY128479.1| Drosophila melanogaster RE53774 full insert cDNA Length = 3787 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 catttgattgtatcatcgac 494 |||||||||||||||||||| Sbjct: 3184 catttgattgtatcatcgac 3165
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 191 cggcggcaagggcggcgtcggcgg 214 ||||||||| |||||||||||||| Sbjct: 2366431 cggcggcaacggcggcgtcggcgg 2366454
>gb|AC087543.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0068N06, complete sequence Length = 174019 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 cggcggcaagggcggcgtcggcgg 214 ||||||||||||||||| |||||| Sbjct: 158383 cggcggcaagggcggcggcggcgg 158360
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 gatgggcggcggcaacggca 132 |||||||||||||||||||| Sbjct: 2977903 gatgggcggcggcaacggca 2977884
>ref|NM_167868.1| Drosophila melanogaster CG9153-RA, transcript variant A (CG9153), mRNA Length = 3818 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 catttgattgtatcatcgac 494 |||||||||||||||||||| Sbjct: 3232 catttgattgtatcatcgac 3213
>ref|NM_167736.1| Drosophila melanogaster CG32521-RC, transcript variant C (CG32521), mRNA Length = 1220 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 191 cggcggcaagggcggcgtcggcgg 214 ||||||||| |||||||||||||| Sbjct: 926 cggcggcaatggcggcgtcggcgg 949
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 191 cggcggcaagggcggcgtcggcgg 214 ||||||||||||||||| |||||| Sbjct: 506738 cggcggcaagggcggcggcggcgg 506761
>ref|NM_138254.2| Drosophila melanogaster CG9153-RB, transcript variant B (CG9153), mRNA Length = 3770 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 catttgattgtatcatcgac 494 |||||||||||||||||||| Sbjct: 3184 catttgattgtatcatcgac 3165
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 gcggcaagggcggcgtcggc 212 |||||||||||||||||||| Sbjct: 4589625 gcggcaagggcggcgtcggc 4589644 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 cgtgcccgcctcctcccgcg 288 |||||||||||||||||||| Sbjct: 4014548 cgtgcccgcctcctcccgcg 4014529
>gb|AY850391.1| Azospirillum brasilense disrupted TrpE (trpE) gene, partial sequence Length = 2696 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 146 cggcgccgccgcctactgggacgcccgc 173 |||||||||||||||| | ||||||||| Sbjct: 1288 cggcgccgccgcctacggcgacgcccgc 1315
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 aggatgggcggcggcaacgg 130 |||||||||||||||||||| Sbjct: 1612197 aggatgggcggcggcaacgg 1612216 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 189 accggcggcaagggcggcgtcggc 212 ||||||||||||||||||| |||| Sbjct: 1448050 accggcggcaagggcggcggcggc 1448073
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 cggcggcaagggcggcgtcggcgg 214 ||||||||||||||||| |||||| Sbjct: 15986859 cggcggcaagggcggcggcggcgg 15986836
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 ctcctctccctccaccggcg 195 |||||||||||||||||||| Sbjct: 16142229 ctcctctccctccaccggcg 16142248
>gb|AC087549.2|AC087549 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0039C14, complete sequence Length = 135098 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 cggcggcaagggcggcgtcggcgg 214 ||||||||||||||||| |||||| Sbjct: 1964 cggcggcaagggcggcggcggcgg 1941
>gb|AF090446.1| Zea mays cosmid IV.1E1 22-kDa alpha zein protein 21 (azs22-16) gene, complete cds; retrotransposon Opie-2 gag protein, polyprotein, and copia protein genes, complete cds; and unknown genes Length = 30593 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 gcggcgtcggcgggttcttc 221 |||||||||||||||||||| Sbjct: 7280 gcggcgtcggcgggttcttc 7299
>dbj|AP004681.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0040M10 Length = 162790 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 ctcctctccctccaccggcg 195 |||||||||||||||||||| Sbjct: 47022 ctcctctccctccaccggcg 47041
>gb|AE003568.4| Drosophila melanogaster chromosome X, section 71 of 74 of the complete sequence Length = 315815 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 cggcggcaagggcggcgtcggcgg 214 ||||||||| |||||||||||||| Sbjct: 4182 cggcggcaatggcggcgtcggcgg 4159
>gb|AF016585.1|AF016585 Streptomyces caelestis cytochrome P-450 hydroxylase homolog (nidi) gene, partial cds; polyketide synthase modules 1 through 7 (nidA) genes, complete cds; and N-methyltransferase homolog gene, partial cds Length = 41097 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 gctccggccgctcctccgcg 264 |||||||||||||||||||| Sbjct: 31968 gctccggccgctcctccgcg 31949
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 gcgtgcccgcctcctcccgc 287 |||||||||||||||||||| Sbjct: 1446490 gcgtgcccgcctcctcccgc 1446471
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 cggcggcaagggcggcgtcggcgg 214 ||||||||||||||||| |||||| Sbjct: 15995100 cggcggcaagggcggcggcggcgg 15995077
>dbj|D78506.1|RICP181X2 Oryza sativa (indica cultivar-group) gene for w-3 fatty acid desaturase, complete cds (exon1-8) Length = 4544 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 190 ccggcggcaagggcggcgtcggcg 213 |||||||||| ||||||||||||| Sbjct: 665 ccggcggcaatggcggcgtcggcg 688 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,382,443 Number of Sequences: 3902068 Number of extensions: 4382443 Number of successful extensions: 99212 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96957 Number of HSP's gapped (non-prelim): 2255 length of query: 577 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 554 effective length of database: 17,143,297,704 effective search space: 9497386928016 effective search space used: 9497386928016 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
