ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd12n21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DCDA_DEIRA (Q9RTK2) Diaminopimelate decarboxylase (EC 4.1.1.20) ... 30 6.1

>DCDA_DEIRA (Q9RTK2) Diaminopimelate decarboxylase (EC 4.1.1.20) (DAP|
           decarboxylase)
          Length = 379

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -2

Query: 129 TRSTARRLCLAIAAFSQLLLHLCFTASEPLNERWIDKVDVVW 4
           T+ T R  CL  A  ++ L  + + AS PL   W      VW
Sbjct: 261 TKRTGRNFCLVDAGMTEFLRPMLYGASHPLYPMWDALATEVW 302


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,266,458
Number of Sequences: 219361
Number of extensions: 310265
Number of successful extensions: 1223
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6029593548
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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