ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd12n18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY104649.1| Zea mays PCO133877 mRNA sequence 537 e-149
2gb|DQ119301.1| Oryza sativa (indica cultivar-group) putative ubi... 478 e-131
3dbj|AK067123.1| Oryza sativa (japonica cultivar-group) cDNA clon... 367 3e-98
4dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 266 8e-68
5gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 266 8e-68
6emb|AL845344.4|CNS08CB6 Oryza sativa chromosome 12, . BAC OSJNBb... 266 8e-68
7ref|NM_112024.3| Arabidopsis thaliana cysteine-type endopeptidas... 147 5e-32
8gb|AY064010.1| Arabidopsis thaliana At3g11910 mRNA sequence 147 5e-32
9gb|BT002760.1| Arabidopsis thaliana clone C105177 putative ubiqu... 147 5e-32
10gb|AC108871.3| Oryza sativa (japonica cultivar-group) chromosome... 133 7e-28
11dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 133 7e-28
12gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 133 7e-28
13dbj|AK059573.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 1e-23
14ref|NM_120743.2| Arabidopsis thaliana UBP12 (UBIQUITIN-SPECIFIC ... 101 3e-18
15ref|NM_180452.1| Arabidopsis thaliana UBP12 (UBIQUITIN-SPECIFIC ... 101 3e-18
16gb|BT018385.1| Zea mays clone EL01N0312A04.d mRNA sequence 101 3e-18
17gb|AY142616.1| Arabidopsis thaliana putative ubiquitin-specific ... 101 3e-18
18gb|AF360198.1| Arabidopsis thaliana putative ubiquitin-specific ... 101 3e-18
19gb|AF302663.1|AF302663 Arabidopsis thaliana ubiquitin-specific p... 101 3e-18
20gb|AC016795.6|ATAC016795 Arabidopsis thaliana chromosome III BAC... 90 1e-14
21dbj|AP002543.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 70 9e-09
22ref|XM_476711.1| Oryza sativa (japonica cultivar-group), mRNA 58 3e-05
23dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
24dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
25gb|AC171736.1| Lycopersicon esculentum chromosome 11 clone C11HB... 58 3e-05
26dbj|AP006535.1| Lotus japonicus genomic DNA, chromosome 2, clone... 54 5e-04
27ref|NM_122366.2| Arabidopsis thaliana copper ion binding / metal... 42 2.1
28ref|NM_203101.1| Arabidopsis thaliana copper ion binding / metal... 42 2.1
29emb|AL354835.8| Human DNA sequence from clone RP11-164B1 on chro... 42 2.1
30gb|AY133835.1| Arabidopsis thaliana clone U19753 unknown protein... 42 2.1
31gb|AY072071.1| Arabidopsis thaliana unknown protein (At5g24580) ... 42 2.1
32dbj|AB010068.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 2.1
33gb|AC099743.3| Papio anubis clone RP41-450I16, complete sequence 40 8.2
34gb|AC108875.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.2
35gb|AC103896.3| Papio anubis clone RP41-441D23, complete sequence 40 8.2
36gb|AC150574.2| Bos taurus BAC CH240-237H4 (Children's Hospital ... 40 8.2
37gb|AC125255.15| Mus musculus chromosome 5, clone RP24-332C17, co... 40 8.2
38gb|AC137617.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.2
39gb|AC139580.4| Mus musculus BAC clone RP23-110M15 from chromosom... 40 8.2
40gb|AC131715.3| Mus musculus BAC clone RP23-180N22 from chromosom... 40 8.2
41gb|AC122241.4| Mus musculus BAC clone RP23-146M20 from chromosom... 40 8.2
42gb|AC126449.4| Mus musculus BAC clone RP23-359P11 from chromosom... 40 8.2
43ref|XM_734749.1| Plasmodium chabaudi chabaudi ubiquitin activati... 40 8.2
44ref|XM_966756.1| PREDICTED: Tribolium castaneum similar to CG191... 40 8.2
45gb|AC166356.1| Mus musculus BAC clone RP23-410F8 from chromosome... 40 8.2
46gb|AC144770.1| Homo sapiens chromosome 19 clone XXfos-87852H4, c... 40 8.2
47gb|AC125062.5| Mus musculus BAC clone RP23-419P12 from chromosom... 40 8.2
48gb|AC092312.3| Homo sapiens chromosome 19 clone LLNLR-288G3, com... 40 8.2
49gb|AC023932.11| Homo sapiens chromosome 18, clone RP11-510D21, c... 40 8.2
50gb|AC091577.9| Homo sapiens chromosome 18, clone RP11-704J2, com... 40 8.2
51gb|AC091608.2| Homo sapiens chromosome 1 clone RP11-97O14, compl... 40 8.2
52dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
53gb|AC158651.12| Mus musculus BAC RP24-68I7 (Roswell Park Cancer... 40 8.2
54gb|AC153613.9| Mus musculus 10 BAC RP23-23C9 (Roswell Park Cance... 40 8.2
55gb|DQ343599.1| Perna perna isolate Ven36 cytochrome oxidase subu... 40 8.2
56gb|DQ343597.1| Perna perna isolate Ven25 cytochrome oxidase subu... 40 8.2
57gb|DQ343609.1| Perna perna isolate SA4 NADH dehydrogenase subuni... 40 8.2
58gb|DQ343607.1| Perna perna isolate SA2 NADH dehydrogenase subuni... 40 8.2
59gb|DQ343606.1| Perna perna isolate SA1 NADH dehydrogenase subuni... 40 8.2
60emb|AL132709.5|CNS01DTB Human chromosome 14 DNA sequence BAC R-9... 40 8.2
61gb|AE016830.1| Enterococcus faecalis V583, complete genome 40 8.2
62emb|AL805899.20| Mouse DNA sequence from clone RP23-400P11 on ch... 40 8.2
63gb|AC171072.2| Rhesus Macaque CHR7 BAC CH250-508E7 (Children's H... 40 8.2
64emb|AL928539.4| Mouse DNA sequence from clone RP23-152D24 on chr... 40 8.2
65gb|AC167811.4| Mus musculus BAC clone RP24-286L8 from chromosome... 40 8.2 
>gb|AY104649.1| Zea mays PCO133877 mRNA sequence
          Length = 927

 Score =  537 bits (271), Expect = e-149
 Identities = 423/474 (89%)
 Strand = Plus / Plus

                                                                       
Query: 127 ggaaattaagtttgagcctaatgtgatgtgtgaacatattgacaagaaacttagtttccg 186
           |||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 16  ggaaattaagtttgagccaaatgtgatgtgcgaacatattgacaagaaacttactttccg 75

                                                                       
Query: 187 atctagtcagcttgaagatggggacataatcagtttccaaaagccatctataccaggtgg 246
            ||||||||||||||||| || ||||| ||| ||||||||||| |  || | |||| |||
Sbjct: 76  ctctagtcagcttgaagacggagacattatctgtttccaaaaggctcctgttccagatgg 135

                                                                       
Query: 247 cgatactcaagtgcgctataaagatgttccttctttcttggagtatgttcataataggca 306
            ||| | ||||||||||||  |||||||||||| ||||||||||||||||| ||||||||
Sbjct: 136 tgatgcacaagtgcgctatccagatgttccttcattcttggagtatgttcacaataggca 195

                                                                       
Query: 307 ggttgtgcacttccggtgtctggagaaaccaaaggaggaagaattttgtttggaattgtc 366
           |||||||||||| ||||||||||| ||||||||||| || || |||| ||||||||||||
Sbjct: 196 ggttgtgcactttcggtgtctggacaaaccaaaggatgatgatttttctttggaattgtc 255

                                                                       
Query: 367 gaagcttcatacttatgatgatgttgttgagagagttgcacgccaacttggattggatga 426
           |||||||||||| ||||||||||||||||||||||||||||  |||||||| ||||||||
Sbjct: 256 gaagcttcatacatatgatgatgttgttgagagagttgcacatcaacttgggttggatga 315

                                                                       
Query: 427 tccatcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaaccacagcc 486
           ||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 316 tccatcaaagatacggcttacgtctcacaattgttattctcagcaacctaaaccacagcc 375

                                                                       
Query: 487 catcagatatcgtggagtagagcatctattggatatgcttgtccattataatcagacttc 546
            || |||||| | || ||||  |||||| ||||||||||||| |||||||||||||||||
Sbjct: 376 tattagatataggggggtagcacatctactggatatgcttgtncattataatcagacttc 435

                                                                 
Query: 547 tgacatactgtattatgaagtcttggacattccactgccagaattgcagtgttt 600
           ||| ||  |||||||||| ||  ||||||||||||||||||| |||||| ||||
Sbjct: 436 tgatatcttgtattatgaggttctggacattccactgccagatttgcagcgttt 489
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>gb|DQ119301.1| Oryza sativa (indica cultivar-group) putative ubiquitin protease
           mRNA, partial cds
          Length = 1593

 Score =  478 bits (241), Expect = e-131
 Identities = 361/401 (90%)
 Strand = Plus / Plus

                                                                       
Query: 200 gaagatggggacataatcagtttccaaaagccatctataccaggtggcgatactcaagtg 259
           |||||||||||||||||  ||||||||||| || || |  ||| ||| || |||||||||
Sbjct: 1   gaagatggggacataatatgtttccaaaagtcacctgtgtcagatggggagactcaagtg 60

                                                                       
Query: 260 cgctataaagatgttccttctttcttggagtatgttcataataggcaggttgtgcacttc 319
           || |||  ||| |||||||| || ||||||||||| |||||||| ||||| |||||||||
Sbjct: 61  cggtatccagacgttccttcatttttggagtatgtgcataatagacaggtggtgcacttc 120

                                                                       
Query: 320 cggtgtctggagaaaccaaaggaggaagaattttgtttggaattgtcgaagcttcatact 379
           |||| | ||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 121 cggtctttggagaaaccaaaggaggatgatttttgtttggaattgtcgaagcttcatact 180

                                                                       
Query: 380 tatgatgatgttgttgagagagttgcacgccaacttggattggatgatccatcaaaaatt 439
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 181 tatgatgatgttgttgagagagttgcacgccaacttggcttggatgatccatcaaaaatt 240

                                                                       
Query: 440 cggcttacgtctcacaattgctattctcagcaacctaaaccacagcccatcagatatcgt 499
           || ||||| |||||||| || ||||| |||||||||||||||||||| ||||||||||||
Sbjct: 241 cgccttacatctcacaactgttattcccagcaacctaaaccacagcctatcagatatcgt 300

                                                                       
Query: 500 ggagtagagcatctattggatatgcttgtccattataatcagacttctgacatactgtat 559
           || |||||||| ||||||||||||||||| ||||| |||||||||||||||||  |||||
Sbjct: 301 ggtgtagagcacctattggatatgcttgttcattacaatcagacttctgacatcttgtat 360

                                                    
Query: 560 tatgaagtcttggacattccactgccagaattgcagtgttt 600
           || || ||  |||||||||||||||||||||||||||||||
Sbjct: 361 tacgaggttctggacattccactgccagaattgcagtgttt 401
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>dbj|AK067123.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096M22, full
            insert sequence
          Length = 3975

 Score =  367 bits (185), Expect = 3e-98
 Identities = 398/469 (84%)
 Strand = Plus / Plus

                                                                        
Query: 127  ggaaattaagtttgagcctaatgtgatgtgtgaacatattgacaagaaacttagtttccg 186
            ||||||||| |||||||| |||||||||||||||||||||||||| |||   | ||||||
Sbjct: 2223 ggaaattaaatttgagccaaatgtgatgtgtgaacatattgacaaaaaagccactttccg 2282

                                                                        
Query: 187  atctagtcagcttgaagatggggacataatcagtttccaaaagccatctataccaggtgg 246
              ||||||||||||||||||||||||| ||| ||||||||||  || ||||||| | | |
Sbjct: 2283 tgctagtcagcttgaagatggggacatcatctgtttccaaaaatcacctatacctgatag 2342

                                                                        
Query: 247  cgatactcaagtgcgctataaagatgttccttctttcttggagtatgttcataataggca 306
             || |||||| |||| |||  |||||| ||||| |   ||||||||||||||||||||||
Sbjct: 2343 tgacactcaaatgcgttatccagatgtcccttcgtatctggagtatgttcataataggca 2402

                                                                        
Query: 307  ggttgtgcacttccggtgtctggagaaaccaaaggaggaagaattttgtttggaattgtc 366
            |||||||||||| ||||   |||||||||||||||| || || |||| ||||||||||||
Sbjct: 2403 ggttgtgcactttcggttattggagaaaccaaaggatgatgacttttctttggaattgtc 2462

                                                                        
Query: 367  gaagcttcatacttatgatgatgttgttgagagagttgcacgccaacttggattggatga 426
             || |||||||| |||||||||||||||||||||||||| || || |||||  |||||||
Sbjct: 2463 aaaacttcatacctatgatgatgttgttgagagagttgcccgtcagcttggtgtggatga 2522

                                                                        
Query: 427  tccatcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaaccacagcc 486
            |||| | |||||||| || || || || || |||||||| ||||| |||||||| || ||
Sbjct: 2523 tccagcgaaaattcgtctaacatcccataactgctattcgcagcagcctaaaccgcaacc 2582

                                                                        
Query: 487  catcagatatcgtggagtagagcatctattggatatgcttgtccattataatcagacttc 546
             ||| ||||||| ||||| |||||||| ||||| |||||  | |||||||||||||| ||
Sbjct: 2583 tatctgatatcggggagtggagcatcttttggacatgctcattcattataatcagacatc 2642

                                                             
Query: 547  tgacatactgtattatgaagtcttggacattccactgccagaattgcag 595
             |||||| |||||||||| || ||||| |||||||||||||||||||||
Sbjct: 2643 agacatattgtattatgaggtgttggatattccactgccagaattgcag 2691
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  266 bits (134), Expect = 8e-68
 Identities = 167/178 (93%)
 Strand = Plus / Plus

                                                                            
Query: 364      gtcgaagcttcatacttatgatgatgttgttgagagagttgcacgccaacttggattgga 423
                |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 18385808 gtcgaagcttcatacttatgatgatgttgttgagagagttgcacgccaacttggcttgga 18385867

                                                                            
Query: 424      tgatccatcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaaccaca 483
                |||||||||||||||||| ||||| |||||||| || ||||| |||||||||||||||||
Sbjct: 18385868 tgatccatcaaaaattcgccttacatctcacaactgttattcccagcaacctaaaccaca 18385927

                                                                          
Query: 484      gcccatcagatatcgtggagtagagcatctattggatatgcttgtccattataatcag 541
                ||| |||||||||||||| |||||||| ||||||||||||||||| ||||| ||||||
Sbjct: 18385928 gcctatcagatatcgtggtgtagagcacctattggatatgcttgttcattacaatcag 18385985



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 71/77 (92%), Gaps = 1/77 (1%)
 Strand = Plus / Plus

                                                                            
Query: 1        aggacccgcagnacgtcccggttcacctggacgatcgagaacttcaccaggctcagtggg 60
                ||||||||||| ||||| |||||||| |||||||||||||||||||||||| |||  |||
Sbjct: 18376318 aggacccgcag-acgtcgcggttcacgtggacgatcgagaacttcaccaggatcaacggg 18376376

                                 
Query: 61       aagaagcactactcgga 77
                |||||||||||||||||
Sbjct: 18376377 aagaagcactactcgga 18376393



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 98/116 (84%)
 Strand = Plus / Plus

                                                                            
Query: 194      cagcttgaagatggggacataatcagtttccaaaagccatctataccaggtggcgatact 253
                |||||||||||||||||||||||  ||||||||||| || || |  ||| ||| || |||
Sbjct: 18385197 cagcttgaagatggggacataatatgtttccaaaagtcacctgtgtcagatggggagact 18385256

                                                                        
Query: 254      caagtgcgctataaagatgttccttctttcttggagtatgttcataataggcaggt 309
                |||||||| |||  ||| |||||||| || ||||||||||| |||||||| |||||
Sbjct: 18385257 caagtgcggtatccagacgttccttcatttttggagtatgtgcataatagacaggt 18385312



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 63/70 (90%)
 Strand = Plus / Plus

                                                                            
Query: 127      ggaaattaagtttgagcctaatgtgatgtgtgaacatattgacaagaaacttagtttccg 186
                |||||||||||||||||| ||||||||||| ||||| |||||||||||||| | ||||||
Sbjct: 18385017 ggaaattaagtttgagccaaatgtgatgtgcgaacacattgacaagaaactaactttccg 18385076

                          
Query: 187      atctagtcag 196
                 || ||||||
Sbjct: 18385077 ttccagtcag 18385086



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 55/60 (91%)
 Strand = Plus / Plus

                                                                            
Query: 306      aggttgtgcacttccggtgtctggagaaaccaaaggaggaagaattttgtttggaattgt 365
                |||| ||||||||||||| | ||||||||||||||||||| || ||||||||||||||||
Sbjct: 18385655 aggtggtgcacttccggtctttggagaaaccaaaggaggatgatttttgtttggaattgt 18385714



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                            
Query: 539      cagacttctgacatactgtattatgaagtcttggacattccactgccagaattgcagtgt 598
                ||||||||||||||  ||||||| || ||  |||||||||||||||||||||||||||||
Sbjct: 18386062 cagacttctgacatcttgtattacgaggttctggacattccactgccagaattgcagtgt 18386121

                  
Query: 599      tt 600
                ||
Sbjct: 18386122 tt 18386123
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  266 bits (134), Expect = 8e-68
 Identities = 167/178 (93%)
 Strand = Plus / Plus

                                                                            
Query: 364      gtcgaagcttcatacttatgatgatgttgttgagagagttgcacgccaacttggattgga 423
                |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 18312034 gtcgaagcttcatacttatgatgatgttgttgagagagttgcacgccaacttggcttgga 18312093

                                                                            
Query: 424      tgatccatcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaaccaca 483
                |||||||||||||||||| ||||| |||||||| || ||||| |||||||||||||||||
Sbjct: 18312094 tgatccatcaaaaattcgccttacatctcacaactgttattcccagcaacctaaaccaca 18312153

                                                                          
Query: 484      gcccatcagatatcgtggagtagagcatctattggatatgcttgtccattataatcag 541
                ||| |||||||||||||| |||||||| ||||||||||||||||| ||||| ||||||
Sbjct: 18312154 gcctatcagatatcgtggtgtagagcacctattggatatgcttgttcattacaatcag 18312211



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 71/77 (92%), Gaps = 1/77 (1%)
 Strand = Plus / Plus

                                                                            
Query: 1        aggacccgcagnacgtcccggttcacctggacgatcgagaacttcaccaggctcagtggg 60
                ||||||||||| ||||| |||||||| |||||||||||||||||||||||| |||  |||
Sbjct: 18302544 aggacccgcag-acgtcgcggttcacgtggacgatcgagaacttcaccaggatcaacggg 18302602

                                 
Query: 61       aagaagcactactcgga 77
                |||||||||||||||||
Sbjct: 18302603 aagaagcactactcgga 18302619



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 98/116 (84%)
 Strand = Plus / Plus

                                                                            
Query: 194      cagcttgaagatggggacataatcagtttccaaaagccatctataccaggtggcgatact 253
                |||||||||||||||||||||||  ||||||||||| || || |  ||| ||| || |||
Sbjct: 18311423 cagcttgaagatggggacataatatgtttccaaaagtcacctgtgtcagatggggagact 18311482

                                                                        
Query: 254      caagtgcgctataaagatgttccttctttcttggagtatgttcataataggcaggt 309
                |||||||| |||  ||| |||||||| || ||||||||||| |||||||| |||||
Sbjct: 18311483 caagtgcggtatccagacgttccttcatttttggagtatgtgcataatagacaggt 18311538



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 63/70 (90%)
 Strand = Plus / Plus

                                                                            
Query: 127      ggaaattaagtttgagcctaatgtgatgtgtgaacatattgacaagaaacttagtttccg 186
                |||||||||||||||||| ||||||||||| ||||| |||||||||||||| | ||||||
Sbjct: 18311243 ggaaattaagtttgagccaaatgtgatgtgcgaacacattgacaagaaactaactttccg 18311302

                          
Query: 187      atctagtcag 196
                 || ||||||
Sbjct: 18311303 ttccagtcag 18311312



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 55/60 (91%)
 Strand = Plus / Plus

                                                                            
Query: 306      aggttgtgcacttccggtgtctggagaaaccaaaggaggaagaattttgtttggaattgt 365
                |||| ||||||||||||| | ||||||||||||||||||| || ||||||||||||||||
Sbjct: 18311881 aggtggtgcacttccggtctttggagaaaccaaaggaggatgatttttgtttggaattgt 18311940



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                            
Query: 539      cagacttctgacatactgtattatgaagtcttggacattccactgccagaattgcagtgt 598
                ||||||||||||||  ||||||| || ||  |||||||||||||||||||||||||||||
Sbjct: 18312288 cagacttctgacatcttgtattacgaggttctggacattccactgccagaattgcagtgt 18312347

                  
Query: 599      tt 600
                ||
Sbjct: 18312348 tt 18312349
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>emb|AL845344.4|CNS08CB6 Oryza sativa chromosome 12, . BAC OSJNBb0108O14 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 138585

 Score =  266 bits (134), Expect = 8e-68
 Identities = 167/178 (93%)
 Strand = Plus / Plus

                                                                         
Query: 364   gtcgaagcttcatacttatgatgatgttgttgagagagttgcacgccaacttggattgga 423
             |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 37707 gtcgaagcttcatacttatgatgatgttgttgagagagttgcacgccaacttggcttgga 37766

                                                                         
Query: 424   tgatccatcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaaccaca 483
             |||||||||||||||||| ||||| |||||||| || ||||| |||||||||||||||||
Sbjct: 37767 tgatccatcaaaaattcgccttacatctcacaactgttattcccagcaacctaaaccaca 37826

                                                                       
Query: 484   gcccatcagatatcgtggagtagagcatctattggatatgcttgtccattataatcag 541
             ||| |||||||||||||| |||||||| ||||||||||||||||| ||||| ||||||
Sbjct: 37827 gcctatcagatatcgtggtgtagagcacctattggatatgcttgttcattacaatcag 37884



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 71/77 (92%), Gaps = 1/77 (1%)
 Strand = Plus / Plus

                                                                         
Query: 1     aggacccgcagnacgtcccggttcacctggacgatcgagaacttcaccaggctcagtggg 60
             ||||||||||| ||||| |||||||| |||||||||||||||||||||||| |||  |||
Sbjct: 28217 aggacccgcag-acgtcgcggttcacgtggacgatcgagaacttcaccaggatcaacggg 28275

                              
Query: 61    aagaagcactactcgga 77
             |||||||||||||||||
Sbjct: 28276 aagaagcactactcgga 28292



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 98/116 (84%)
 Strand = Plus / Plus

                                                                         
Query: 194   cagcttgaagatggggacataatcagtttccaaaagccatctataccaggtggcgatact 253
             |||||||||||||||||||||||  ||||||||||| || || |  ||| ||| || |||
Sbjct: 37096 cagcttgaagatggggacataatatgtttccaaaagtcacctgtgtcagatggggagact 37155

                                                                     
Query: 254   caagtgcgctataaagatgttccttctttcttggagtatgttcataataggcaggt 309
             |||||||| |||  ||| |||||||| || ||||||||||| |||||||| |||||
Sbjct: 37156 caagtgcggtatccagacgttccttcatttttggagtatgtgcataatagacaggt 37211



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 63/70 (90%)
 Strand = Plus / Plus

                                                                         
Query: 127   ggaaattaagtttgagcctaatgtgatgtgtgaacatattgacaagaaacttagtttccg 186
             |||||||||||||||||| ||||||||||| ||||| |||||||||||||| | ||||||
Sbjct: 36916 ggaaattaagtttgagccaaatgtgatgtgcgaacacattgacaagaaactaactttccg 36975

                       
Query: 187   atctagtcag 196
              || ||||||
Sbjct: 36976 ttccagtcag 36985



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 55/60 (91%)
 Strand = Plus / Plus

                                                                         
Query: 306   aggttgtgcacttccggtgtctggagaaaccaaaggaggaagaattttgtttggaattgt 365
             |||| ||||||||||||| | ||||||||||||||||||| || ||||||||||||||||
Sbjct: 37554 aggtggtgcacttccggtctttggagaaaccaaaggaggatgatttttgtttggaattgt 37613



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                         
Query: 539   cagacttctgacatactgtattatgaagtcttggacattccactgccagaattgcagtgt 598
             ||||||||||||||  ||||||| || ||  |||||||||||||||||||||||||||||
Sbjct: 37961 cagacttctgacatcttgtattacgaggttctggacattccactgccagaattgcagtgt 38020

               
Query: 599   tt 600
             ||
Sbjct: 38021 tt 38022
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>ref|NM_112024.3| Arabidopsis thaliana cysteine-type endopeptidase/ double-stranded DNA
            binding / ubiquitin thiolesterase/ ubiquitin-specific
            protease AT3G11910 mRNA, complete cds
          Length = 3813

 Score =  147 bits (74), Expect = 5e-32
 Identities = 146/170 (85%)
 Strand = Plus / Plus

                                                                        
Query: 425  gatccatcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaaccacag 484
            |||||||||||| || ||||||| |||||||||||||| ||||||||||| || || |||
Sbjct: 2616 gatccatcaaaacttaggcttacatctcacaattgctactctcagcaacccaagcctcag 2675

                                                                        
Query: 485  cccatcagatatcgtggagtagagcatctattggatatgcttgtccattataatcagact 544
            || |||| ||| ||||||||||| ||||| |  |||||| | || || ||||||||||| 
Sbjct: 2676 ccaatcaaataccgtggagtagatcatctttcagatatgttagttcactataatcagacg 2735

                                                              
Query: 545  tctgacatactgtattatgaagtcttggacattccactgccagaattgca 594
            ||||||||| ||||||||||||| ||||| ||||| || |||||||||||
Sbjct: 2736 tctgacatattgtattatgaagttttggatattcctcttccagaattgca 2785
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>gb|AY064010.1| Arabidopsis thaliana At3g11910 mRNA sequence
          Length = 4231

 Score =  147 bits (74), Expect = 5e-32
 Identities = 146/170 (85%)
 Strand = Plus / Plus

                                                                        
Query: 425  gatccatcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaaccacag 484
            |||||||||||| || ||||||| |||||||||||||| ||||||||||| || || |||
Sbjct: 3108 gatccatcaaaacttaggcttacatctcacaattgctactctcagcaacccaagcctcag 3167

                                                                        
Query: 485  cccatcagatatcgtggagtagagcatctattggatatgcttgtccattataatcagact 544
            || |||| ||| ||||||||||| ||||| |  |||||| | || || ||||||||||| 
Sbjct: 3168 ccaatcaaataccgtggagtagatcatctttcagatatgttagttcactataatcagacg 3227

                                                              
Query: 545  tctgacatactgtattatgaagtcttggacattccactgccagaattgca 594
            ||||||||| ||||||||||||| ||||| ||||| || |||||||||||
Sbjct: 3228 tctgacatattgtattatgaagttttggatattcctcttccagaattgca 3277
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>gb|BT002760.1| Arabidopsis thaliana clone C105177 putative ubiquitin
            carboxyl-terminal hydrolase (At3g11910) mRNA, complete
            cds
          Length = 3379

 Score =  147 bits (74), Expect = 5e-32
 Identities = 146/170 (85%)
 Strand = Plus / Plus

                                                                        
Query: 425  gatccatcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaaccacag 484
            |||||||||||| || ||||||| |||||||||||||| ||||||||||| || || |||
Sbjct: 2521 gatccatcaaaacttaggcttacatctcacaattgctactctcagcaacccaagcctcag 2580

                                                                        
Query: 485  cccatcagatatcgtggagtagagcatctattggatatgcttgtccattataatcagact 544
            || |||| ||| ||||||||||| ||||| |  |||||| | || || ||||||||||| 
Sbjct: 2581 ccaatcaaataccgtggagtagatcatctttcagatatgttagttcactataatcagacg 2640

                                                              
Query: 545  tctgacatactgtattatgaagtcttggacattccactgccagaattgca 594
            ||||||||| ||||||||||||| ||||| ||||| || |||||||||||
Sbjct: 2641 tctgacatattgtattatgaagttttggatattcctcttccagaattgca 2690
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>gb|AC108871.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0077M24, complete sequence
          Length = 128920

 Score =  133 bits (67), Expect = 7e-28
 Identities = 145/171 (84%)
 Strand = Plus / Minus

                                                                         
Query: 371   cttcatacttatgatgatgttgttgagagagttgcacgccaacttggattggatgatcca 430
             |||||||| |||||||||||||||||||||||||| || || |||||  |||||||||||
Sbjct: 85606 cttcatacctatgatgatgttgttgagagagttgcccgtcagcttggtgtggatgatcca 85547

                                                                         
Query: 431   tcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaaccacagcccatc 490
              | |||||||| || || || || || |||||||| ||||| |||||||| || || |||
Sbjct: 85546 gcgaaaattcgtctaacatcccataactgctattcgcagcagcctaaaccgcaacctatc 85487

                                                                
Query: 491   agatatcgtggagtagagcatctattggatatgcttgtccattataatcag 541
             |||||||| ||||| |||||||| ||||| |||||  | ||||||||||||
Sbjct: 85486 agatatcggggagtggagcatcttttggacatgctcattcattataatcag 85436



 Score =  101 bits (51), Expect = 3e-18
 Identities = 85/95 (89%), Gaps = 1/95 (1%)
 Strand = Plus / Minus

                                                                         
Query: 1     aggacccgcagnacgtcccggttcacctggacgatcgagaacttcaccaggctcagtggg 60
             ||||||||||| ||||| |||||||| ||||||||||||||||||||| || ||| || |
Sbjct: 96711 aggacccgcag-acgtcgcggttcacgtggacgatcgagaacttcacccggatcaatgcg 96653

                                                
Query: 61    aagaagcactactcggatatgttcgtcgttggcgg 95
             ||||||||||||||||||  ||| |||||||||||
Sbjct: 96652 aagaagcactactcggatgcgtttgtcgttggcgg 96618



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 96/115 (83%)
 Strand = Plus / Minus

                                                                         
Query: 195   agcttgaagatggggacataatcagtttccaaaagccatctataccaggtggcgatactc 254
             ||||||||||||||||||| ||| ||||||||||  || ||||||| | | | || ||||
Sbjct: 88279 agcttgaagatggggacatcatctgtttccaaaaatcacctatacctgatagtgacactc 88220

                                                                    
Query: 255   aagtgcgctataaagatgttccttctttcttggagtatgttcataataggcaggt 309
             || |||| |||  |||||| ||||| |   |||||||||||||||||||||||||
Sbjct: 88219 aaatgcgttatccagatgtcccttcgtatctggagtatgttcataataggcaggt 88165



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 43/45 (95%)
 Strand = Plus / Minus

                                                          
Query: 127   ggaaattaagtttgagcctaatgtgatgtgtgaacatattgacaa 171
             ||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 88431 ggaaattaaatttgagccaaatgtgatgtgtgaacatattgacaa 88387



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                      
Query: 539   cagacttctgacatactgtattatgaagtcttggacattccactgccagaattgcag 595
             ||||| || |||||| |||||||||| || ||||| |||||||||||||||||||||
Sbjct: 85343 cagacatcagacatattgtattatgaggtgttggatattccactgccagaattgcag 85287



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                         
Query: 304   gcaggttgtgcacttccggtgtctggagaaaccaaaggaggaagaattttgtttggaatt 363
             ||||||||||||||| ||||   |||||||||||||||| || || |||| |||||||||
Sbjct: 85767 gcaggttgtgcactttcggttattggagaaaccaaaggatgatgacttttctttggaatt 85708

               
Query: 364   gt 365
             ||
Sbjct: 85707 gt 85706
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  133 bits (67), Expect = 7e-28
 Identities = 145/171 (84%)
 Strand = Plus / Minus

                                                                            
Query: 371      cttcatacttatgatgatgttgttgagagagttgcacgccaacttggattggatgatcca 430
                |||||||| |||||||||||||||||||||||||| || || |||||  |||||||||||
Sbjct: 20650598 cttcatacctatgatgatgttgttgagagagttgcccgtcagcttggtgtggatgatcca 20650539

                                                                            
Query: 431      tcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaaccacagcccatc 490
                 | |||||||| || || || || || |||||||| ||||| |||||||| || || |||
Sbjct: 20650538 gcgaaaattcgtctaacatcccataactgctattcgcagcagcctaaaccgcaacctatc 20650479

                                                                   
Query: 491      agatatcgtggagtagagcatctattggatatgcttgtccattataatcag 541
                |||||||| ||||| |||||||| ||||| |||||  | ||||||||||||
Sbjct: 20650478 agatatcggggagtggagcatcttttggacatgctcattcattataatcag 20650428



 Score =  101 bits (51), Expect = 3e-18
 Identities = 85/95 (89%), Gaps = 1/95 (1%)
 Strand = Plus / Minus

                                                                            
Query: 1        aggacccgcagnacgtcccggttcacctggacgatcgagaacttcaccaggctcagtggg 60
                ||||||||||| ||||| |||||||| ||||||||||||||||||||| || ||| || |
Sbjct: 20661703 aggacccgcag-acgtcgcggttcacgtggacgatcgagaacttcacccggatcaatgcg 20661645

                                                   
Query: 61       aagaagcactactcggatatgttcgtcgttggcgg 95
                ||||||||||||||||||  ||| |||||||||||
Sbjct: 20661644 aagaagcactactcggatgcgtttgtcgttggcgg 20661610



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 96/115 (83%)
 Strand = Plus / Minus

                                                                            
Query: 195      agcttgaagatggggacataatcagtttccaaaagccatctataccaggtggcgatactc 254
                ||||||||||||||||||| ||| ||||||||||  || ||||||| | | | || ||||
Sbjct: 20653271 agcttgaagatggggacatcatctgtttccaaaaatcacctatacctgatagtgacactc 20653212

                                                                       
Query: 255      aagtgcgctataaagatgttccttctttcttggagtatgttcataataggcaggt 309
                || |||| |||  |||||| ||||| |   |||||||||||||||||||||||||
Sbjct: 20653211 aaatgcgttatccagatgtcccttcgtatctggagtatgttcataataggcaggt 20653157



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 43/45 (95%)
 Strand = Plus / Minus

                                                             
Query: 127      ggaaattaagtttgagcctaatgtgatgtgtgaacatattgacaa 171
                ||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 20653423 ggaaattaaatttgagccaaatgtgatgtgtgaacatattgacaa 20653379



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                         
Query: 539      cagacttctgacatactgtattatgaagtcttggacattccactgccagaattgcag 595
                ||||| || |||||| |||||||||| || ||||| |||||||||||||||||||||
Sbjct: 20650335 cagacatcagacatattgtattatgaggtgttggatattccactgccagaattgcag 20650279



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                            
Query: 304      gcaggttgtgcacttccggtgtctggagaaaccaaaggaggaagaattttgtttggaatt 363
                ||||||||||||||| ||||   |||||||||||||||| || || |||| |||||||||
Sbjct: 20650759 gcaggttgtgcactttcggttattggagaaaccaaaggatgatgacttttctttggaatt 20650700

                  
Query: 364      gt 365
                ||
Sbjct: 20650699 gt 20650698
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  133 bits (67), Expect = 7e-28
 Identities = 145/171 (84%)
 Strand = Plus / Minus

                                                                            
Query: 371      cttcatacttatgatgatgttgttgagagagttgcacgccaacttggattggatgatcca 430
                |||||||| |||||||||||||||||||||||||| || || |||||  |||||||||||
Sbjct: 20960833 cttcatacctatgatgatgttgttgagagagttgcccgtcagcttggtgtggatgatcca 20960774

                                                                            
Query: 431      tcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaaccacagcccatc 490
                 | |||||||| || || || || || |||||||| ||||| |||||||| || || |||
Sbjct: 20960773 gcgaaaattcgtctaacatcccataactgctattcgcagcagcctaaaccgcaacctatc 20960714

                                                                   
Query: 491      agatatcgtggagtagagcatctattggatatgcttgtccattataatcag 541
                |||||||| ||||| |||||||| ||||| |||||  | ||||||||||||
Sbjct: 20960713 agatatcggggagtggagcatcttttggacatgctcattcattataatcag 20960663



 Score =  101 bits (51), Expect = 3e-18
 Identities = 85/95 (89%), Gaps = 1/95 (1%)
 Strand = Plus / Minus

                                                                            
Query: 1        aggacccgcagnacgtcccggttcacctggacgatcgagaacttcaccaggctcagtggg 60
                ||||||||||| ||||| |||||||| ||||||||||||||||||||| || ||| || |
Sbjct: 20971938 aggacccgcag-acgtcgcggttcacgtggacgatcgagaacttcacccggatcaatgcg 20971880

                                                   
Query: 61       aagaagcactactcggatatgttcgtcgttggcgg 95
                ||||||||||||||||||  ||| |||||||||||
Sbjct: 20971879 aagaagcactactcggatgcgtttgtcgttggcgg 20971845



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 96/115 (83%)
 Strand = Plus / Minus

                                                                            
Query: 195      agcttgaagatggggacataatcagtttccaaaagccatctataccaggtggcgatactc 254
                ||||||||||||||||||| ||| ||||||||||  || ||||||| | | | || ||||
Sbjct: 20963506 agcttgaagatggggacatcatctgtttccaaaaatcacctatacctgatagtgacactc 20963447

                                                                       
Query: 255      aagtgcgctataaagatgttccttctttcttggagtatgttcataataggcaggt 309
                || |||| |||  |||||| ||||| |   |||||||||||||||||||||||||
Sbjct: 20963446 aaatgcgttatccagatgtcccttcgtatctggagtatgttcataataggcaggt 20963392



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 43/45 (95%)
 Strand = Plus / Minus

                                                             
Query: 127      ggaaattaagtttgagcctaatgtgatgtgtgaacatattgacaa 171
                ||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 20963658 ggaaattaaatttgagccaaatgtgatgtgtgaacatattgacaa 20963614



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                         
Query: 539      cagacttctgacatactgtattatgaagtcttggacattccactgccagaattgcag 595
                ||||| || |||||| |||||||||| || ||||| |||||||||||||||||||||
Sbjct: 20960570 cagacatcagacatattgtattatgaggtgttggatattccactgccagaattgcag 20960514



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                            
Query: 304      gcaggttgtgcacttccggtgtctggagaaaccaaaggaggaagaattttgtttggaatt 363
                ||||||||||||||| ||||   |||||||||||||||| || || |||| |||||||||
Sbjct: 20960994 gcaggttgtgcactttcggttattggagaaaccaaaggatgatgacttttctttggaatt 20960935

                  
Query: 364      gt 365
                ||
Sbjct: 20960934 gt 20960933
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>dbj|AK059573.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-A04, full
           insert sequence
          Length = 1843

 Score =  119 bits (60), Expect = 1e-23
 Identities = 112/128 (87%), Gaps = 1/128 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggacccgcagnacgtcccggttcacctggacgatcgagaacttcaccaggctcagtggg 60
           ||||||||||| ||||| |||||||| |||||||||||||||||||||||| |||  |||
Sbjct: 354 aggacccgcag-acgtcgcggttcacgtggacgatcgagaacttcaccaggatcaacggg 412

                                                                       
Query: 61  aagaagcactactcggatatgttcgtcgttggcggatttaaatggcgtgtgctaattttt 120
           |||||||||||||||||   ||| || ||||| ||||| |||||||||||||| ||||| 
Sbjct: 413 aagaagcactactcggagccgtttgttgttggaggattcaaatggcgtgtgctgattttc 472

                   
Query: 121 cccaaggg 128
           || |||||
Sbjct: 473 cctaaggg 480
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>ref|NM_120743.2| Arabidopsis thaliana UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12);
            cysteine-type endopeptidase/ double-stranded DNA binding
            / ubiquitin thiolesterase/ ubi> AT5G06600 (UBP12)
            transcript variant AT5G06600.1 mRNA, complete cds
          Length = 3898

 Score =  101 bits (51), Expect = 3e-18
 Identities = 138/167 (82%)
 Strand = Plus / Plus

                                                                        
Query: 425  gatccatcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaaccacag 484
            |||||||| ||| || ||||||| ||||||||||||||||| |||||||| || || |||
Sbjct: 2633 gatccatccaaacttaggcttacatctcacaattgctattcccagcaacccaagcctcag 2692

                                                                        
Query: 485  cccatcagatatcgtggagtagagcatctattggatatgcttgtccattataatcagact 544
            || ||||  || ||||||||||| ||| | |  |||||| | || ||||| |||||||| 
Sbjct: 2693 cctatcaagtaccgtggagtagaccatttgtcagatatgttagttcattacaatcagacg 2752

                                                           
Query: 545  tctgacatactgtattatgaagtcttggacattccactgccagaatt 591
            ||||||||  |||||||||||||  ||||||| || || ||||||||
Sbjct: 2753 tctgacattttgtattatgaagttctggacatccctcttccagaatt 2799
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>ref|NM_180452.1| Arabidopsis thaliana UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12);
            cysteine-type endopeptidase/ double-stranded DNA binding
            / ubiquitin thiolesterase/ ubi> AT5G06600 (UBP12)
            transcript variant AT5G06600.2 mRNA, complete cds
          Length = 3897

 Score =  101 bits (51), Expect = 3e-18
 Identities = 138/167 (82%)
 Strand = Plus / Plus

                                                                        
Query: 425  gatccatcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaaccacag 484
            |||||||| ||| || ||||||| ||||||||||||||||| |||||||| || || |||
Sbjct: 2632 gatccatccaaacttaggcttacatctcacaattgctattcccagcaacccaagcctcag 2691

                                                                        
Query: 485  cccatcagatatcgtggagtagagcatctattggatatgcttgtccattataatcagact 544
            || ||||  || ||||||||||| ||| | |  |||||| | || ||||| |||||||| 
Sbjct: 2692 cctatcaagtaccgtggagtagaccatttgtcagatatgttagttcattacaatcagacg 2751

                                                           
Query: 545  tctgacatactgtattatgaagtcttggacattccactgccagaatt 591
            ||||||||  |||||||||||||  ||||||| || || ||||||||
Sbjct: 2752 tctgacattttgtattatgaagttctggacatccctcttccagaatt 2798
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>gb|BT018385.1| Zea mays clone EL01N0312A04.d mRNA sequence
          Length = 1626

 Score =  101 bits (51), Expect = 3e-18
 Identities = 91/103 (88%), Gaps = 1/103 (0%)
 Strand = Plus / Plus

                                                                        
Query: 384  atgatgttgttgagagagttgcacgccaacttggattggatgatccatcaaaaattcggc 443
            |||||||||||||| ||||||| || ||||||| ||||||  || ||| |||| ||||||
Sbjct: 1343 atgatgttgttgagggagttgctcgtcaacttgaattggaccatgcatgaaaa-ttcggc 1401

                                                       
Query: 444  ttacgtctcacaattgctattctcagcaacctaaaccacagcc 486
            |||| || ||||||||||| |||||||||||||||||||||||
Sbjct: 1402 ttacatcccacaattgctaatctcagcaacctaaaccacagcc 1444
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>gb|AY142616.1| Arabidopsis thaliana putative ubiquitin-specific protease UBP12
            (At5g06600) mRNA, complete cds
          Length = 3379

 Score =  101 bits (51), Expect = 3e-18
 Identities = 138/167 (82%)
 Strand = Plus / Plus

                                                                        
Query: 425  gatccatcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaaccacag 484
            |||||||| ||| || ||||||| ||||||||||||||||| |||||||| || || |||
Sbjct: 2521 gatccatccaaacttaggcttacatctcacaattgctattcccagcaacccaagcctcag 2580

                                                                        
Query: 485  cccatcagatatcgtggagtagagcatctattggatatgcttgtccattataatcagact 544
            || ||||  || ||||||||||| ||| | |  |||||| | || ||||| |||||||| 
Sbjct: 2581 cctatcaagtaccgtggagtagaccatttgtcagatatgttagttcattacaatcagacg 2640

                                                           
Query: 545  tctgacatactgtattatgaagtcttggacattccactgccagaatt 591
            ||||||||  |||||||||||||  ||||||| || || ||||||||
Sbjct: 2641 tctgacattttgtattatgaagttctggacatccctcttccagaatt 2687
to top
>gb|AF360198.1| Arabidopsis thaliana putative ubiquitin-specific protease UBP12
            (At5g06600) mRNA, complete cds
          Length = 3890

 Score =  101 bits (51), Expect = 3e-18
 Identities = 138/167 (82%)
 Strand = Plus / Plus

                                                                        
Query: 425  gatccatcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaaccacag 484
            |||||||| ||| || ||||||| ||||||||||||||||| |||||||| || || |||
Sbjct: 2632 gatccatccaaacttaggcttacatctcacaattgctattcccagcaacccaagcctcag 2691

                                                                        
Query: 485  cccatcagatatcgtggagtagagcatctattggatatgcttgtccattataatcagact 544
            || ||||  || ||||||||||| ||| | |  |||||| | || ||||| |||||||| 
Sbjct: 2692 cctatcaagtaccgtggagtagaccatttgtcagatatgttagttcattacaatcagacg 2751

                                                           
Query: 545  tctgacatactgtattatgaagtcttggacattccactgccagaatt 591
            ||||||||  |||||||||||||  ||||||| || || ||||||||
Sbjct: 2752 tctgacattttgtattatgaagttctggacatccctcttccagaatt 2798
to top
>gb|AF302663.1|AF302663 Arabidopsis thaliana ubiquitin-specific protease 12 (UBP12) mRNA,
            complete cds
          Length = 3427

 Score =  101 bits (51), Expect = 3e-18
 Identities = 138/167 (82%)
 Strand = Plus / Plus

                                                                        
Query: 425  gatccatcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaaccacag 484
            |||||||| ||| || ||||||| ||||||||||||||||| |||||||| || || |||
Sbjct: 2560 gatccatccaaacttaggcttacatctcacaattgctattcccagcaacccaagcctcag 2619

                                                                        
Query: 485  cccatcagatatcgtggagtagagcatctattggatatgcttgtccattataatcagact 544
            || ||||  || ||||||||||| ||| | |  |||||| | || ||||| |||||||| 
Sbjct: 2620 cctatcaagtaccgtggagtagaccatttgtcagatatgttagttcattacaatcagacg 2679

                                                           
Query: 545  tctgacatactgtattatgaagtcttggacattccactgccagaatt 591
            ||||||||  |||||||||||||  ||||||| || || ||||||||
Sbjct: 2680 tctgacattttgtattatgaagttctggacatccctcttccagaatt 2726
to top
>gb|AC016795.6|ATAC016795 Arabidopsis thaliana chromosome III BAC F26K24 genomic sequence,
             complete sequence
          Length = 100835

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 78/89 (87%)
 Strand = Plus / Minus

                                                                         
Query: 425   gatccatcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaaccacag 484
             |||||||||||| || ||||||| |||||||||||||| ||||||||||| || || |||
Sbjct: 64380 gatccatcaaaacttaggcttacatctcacaattgctactctcagcaacccaagcctcag 64321

                                          
Query: 485   cccatcagatatcgtggagtagagcatct 513
             || |||| ||| ||||||||||| |||||
Sbjct: 64320 ccaatcaaataccgtggagtagatcatct 64292



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                     
Query: 539   cagacttctgacatactgtattatgaagtcttggacattccactgccagaattgca 594
             ||||| ||||||||| ||||||||||||| ||||| ||||| || |||||||||||
Sbjct: 64170 cagacgtctgacatattgtattatgaagttttggatattcctcttccagaattgca 64115
to top
>dbj|AP002543.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F15M7
          Length = 74350

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                         
Query: 425   gatccatcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaaccacag 484
             |||||||| ||| || ||||||| ||||||||||||||||| |||||||| || || |||
Sbjct: 46129 gatccatccaaacttaggcttacatctcacaattgctattcccagcaacccaagcctcag 46070

                                    
Query: 485   cccatcagatatcgtggagtaga 507
             || ||||  || |||||||||||
Sbjct: 46069 cctatcaagtaccgtggagtaga 46047



 Score = 44.1 bits (22), Expect = 0.52
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                   
Query: 538   tcagacttctgacatactgtattatgaagtcttggacattccactgccagaatt 591
             |||||| ||||||||  |||||||||||||  ||||||| || || ||||||||
Sbjct: 45925 tcagacgtctgacattttgtattatgaagttctggacatccctcttccagaatt 45872
to top
>ref|XM_476711.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3351

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                         
Query: 127  ggaaattaagtttgagcctaatgtgatgtgtgaacatattgacaa 171
            |||||| ||||||||||| ||||| ||||||||| ||||||||||
Sbjct: 2229 ggaaatcaagtttgagcccaatgtaatgtgtgaatatattgacaa 2273



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                       
Query: 533  tataatcagacttctgacatactgtattatgaagtcttggacattccactgccagaatt 591
            ||||| ||||||||||| || || || |||||||| ||||| || ||||| ||||||||
Sbjct: 2635 tataaccagacttctgatattctttactatgaagtattggatataccactcccagaatt 2693



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                           
Query: 434  aaaattcggcttacgtctcacaattgctattctcagcaacctaaacc 480
            |||||||||||||| || || || || |||||||| |||||||||||
Sbjct: 2536 aaaattcggcttacatcgcataactgttattctcaacaacctaaacc 2582
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                            
Query: 127     ggaaattaagtttgagcctaatgtgatgtgtgaacatattgacaa 171
               |||||| ||||||||||| ||||| ||||||||| ||||||||||
Sbjct: 3451965 ggaaatcaagtttgagcccaatgtaatgtgtgaatatattgacaa 3452009



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                              
Query: 434     aaaattcggcttacgtctcacaattgctattctcagcaacctaaacc 480
               |||||||||||||| || || || || |||||||| |||||||||||
Sbjct: 3452767 aaaattcggcttacatcgcataactgttattctcaacaacctaaacc 3452813



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                    
Query: 539     cagacttctgacatactgtattatgaagtcttggacattccactgccagaatt 591
               ||||||||||| || || || |||||||| ||||| || ||||| ||||||||
Sbjct: 3452968 cagacttctgatattctttactatgaagtattggatataccactcccagaatt 3453020
to top
>dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0428D12
          Length = 141678

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                          
Query: 127   ggaaattaagtttgagcctaatgtgatgtgtgaacatattgacaa 171
             |||||| ||||||||||| ||||| ||||||||| ||||||||||
Sbjct: 91785 ggaaatcaagtttgagcccaatgtaatgtgtgaatatattgacaa 91829



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 434   aaaattcggcttacgtctcacaattgctattctcagcaacctaaacc 480
             |||||||||||||| || || || || |||||||| |||||||||||
Sbjct: 92587 aaaattcggcttacatcgcataactgttattctcaacaacctaaacc 92633



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                  
Query: 539   cagacttctgacatactgtattatgaagtcttggacattccactgccagaatt 591
             ||||||||||| || || || |||||||| ||||| || ||||| ||||||||
Sbjct: 92788 cagacttctgatattctttactatgaagtattggatataccactcccagaatt 92840
to top
>gb|AC171736.1| Lycopersicon esculentum chromosome 11 clone C11HBa0323E19, complete
             sequence
          Length = 141216

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 95/117 (81%)
 Strand = Plus / Plus

                                                                         
Query: 375   atacttatgatgatgttgttgagagagttgcacgccaacttggattggatgatccatcaa 434
             |||| |||||||| ||||| || ||||| || |  | |||||| |||||||||||||| |
Sbjct: 42029 atacatatgatgaagttgtggaaagagtagctcagcgacttggcttggatgatccatcca 42088

                                                                      
Query: 435   aaattcggcttacgtctcacaattgctattctcagcaacctaaaccacagcccatca 491
             ||||  |||| ||  | || ||||| || ||||||||||||||||| ||||| ||||
Sbjct: 42089 aaataaggctcacaccccataattgttactctcagcaacctaaaccccagccgatca 42145



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                           
Query: 268   agatgttccttctttcttggagtatgttca 297
             |||||||||||||||| |||||||||||||
Sbjct: 40747 agatgttccttctttcctggagtatgttca 40776



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                     
Query: 555   tgtattatgaagtcttggacattccactgccagaattgca 594
             |||| ||||||||  ||||||||||  |||||||||||||
Sbjct: 42285 tgtactatgaagtactggacattcctttgccagaattgca 42324
to top
>dbj|AP006535.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT02D13, TM0546,
             complete sequence
          Length = 107979

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                         
Query: 420   tggatgatccatcaaaaattcggcttacgtctcacaattgctattctcagcaacctaaac 479
             |||| |||||||| |||||| |||||||  | ||||| ||||| ||||| ||||||||||
Sbjct: 78918 tggacgatccatccaaaattaggcttaccccacacaactgctactctcaacaacctaaac 78859

                    
Query: 480   cacagcc 486
             | |||||
Sbjct: 78858 cccagcc 78852



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                              
Query: 127   ggaaattaagtttgagcctaatgtgatgtgtgaacatattgacaagaaa 175
             |||||||||||| || || ||||| |||||||| | |||||||||||||
Sbjct: 79628 ggaaattaagttcgaaccaaatgtcatgtgtgagcctattgacaagaaa 79580
to top
>ref|NM_122366.2| Arabidopsis thaliana copper ion binding / metal ion binding
           AT5G24580 transcript variant AT5G24580.1 mRNA, complete
           cds
          Length = 1156

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 328 ggagaaaccaaaggaggaaga 348
           |||||||||||||||||||||
Sbjct: 180 ggagaaaccaaaggaggaaga 200
to top
>ref|NM_203101.1| Arabidopsis thaliana copper ion binding / metal ion binding
           AT5G24580 transcript variant AT5G24580.2 mRNA, complete
           cds
          Length = 1271

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 328 ggagaaaccaaaggaggaaga 348
           |||||||||||||||||||||
Sbjct: 295 ggagaaaccaaaggaggaaga 315
to top
>emb|AL354835.8| Human DNA sequence from clone RP11-164B1 on chromosome 13q31.1-32.3,
             complete sequence
          Length = 159620

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 124   aagggaaattaagtttgagcc 144
             |||||||||||||||||||||
Sbjct: 10624 aagggaaattaagtttgagcc 10604
to top
>gb|AY133835.1| Arabidopsis thaliana clone U19753 unknown protein (At5g24580) mRNA,
           complete cds
          Length = 991

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 328 ggagaaaccaaaggaggaaga 348
           |||||||||||||||||||||
Sbjct: 120 ggagaaaccaaaggaggaaga 140
to top
>gb|AY072071.1| Arabidopsis thaliana unknown protein (At5g24580) mRNA, complete cds
          Length = 1172

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 328 ggagaaaccaaaggaggaaga 348
           |||||||||||||||||||||
Sbjct: 180 ggagaaaccaaaggaggaaga 200
to top
>dbj|AB010068.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K18P6
          Length = 74589

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 328   ggagaaaccaaaggaggaaga 348
             |||||||||||||||||||||
Sbjct: 46234 ggagaaaccaaaggaggaaga 46214
to top
>gb|AC099743.3| Papio anubis clone RP41-450I16, complete sequence
          Length = 115022

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 47     ccaggctcagtgggaagaagcact 70
              ||||||||||||||||| ||||||
Sbjct: 114013 ccaggctcagtgggaaggagcact 114036
to top
>gb|AC108875.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1123_C08,
              complete sequence
          Length = 132017

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 372    ttcatacttatgatgatgtt 391
              ||||||||||||||||||||
Sbjct: 122852 ttcatacttatgatgatgtt 122833
to top
>gb|AC103896.3| Papio anubis clone RP41-441D23, complete sequence
          Length = 156540

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 47    ccaggctcagtgggaagaagcact 70
             ||||||||||||||||| ||||||
Sbjct: 15304 ccaggctcagtgggaaggagcact 15327
to top
>gb|AC150574.2| Bos taurus  BAC CH240-237H4 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 142758

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 301   taggcaggttgtgcacttcc 320
             ||||||||||||||||||||
Sbjct: 74465 taggcaggttgtgcacttcc 74446
to top
>gb|AC125255.15| Mus musculus chromosome 5, clone RP24-332C17, complete sequence
          Length = 173258

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   cataatcagtttccaaaagc 230
             ||||||||||||||||||||
Sbjct: 17607 cataatcagtttccaaaagc 17588
to top
>gb|AC137617.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0084P24, complete sequence
          Length = 148784

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 372   ttcatacttatgatgatgtt 391
             ||||||||||||||||||||
Sbjct: 72464 ttcatacttatgatgatgtt 72445
to top
>gb|AC139580.4| Mus musculus BAC clone RP23-110M15 from chromosome 13, complete sequence
          Length = 205480

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 416    ggattggatgatccatcaaa 435
              ||||||||||||||||||||
Sbjct: 124502 ggattggatgatccatcaaa 124521
to top
>gb|AC131715.3| Mus musculus BAC clone RP23-180N22 from chromosome 6, complete sequence
          Length = 180102

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 47     ccaggctcagtgggaagaag 66
              ||||||||||||||||||||
Sbjct: 140204 ccaggctcagtgggaagaag 140223
to top
>gb|AC122241.4| Mus musculus BAC clone RP23-146M20 from chromosome 15, complete
             sequence
          Length = 195429

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   cataatcagtttccaaaagc 230
             ||||||||||||||||||||
Sbjct: 79609 cataatcagtttccaaaagc 79590
to top
>gb|AC126449.4| Mus musculus BAC clone RP23-359P11 from chromosome 17, complete sequence
          Length = 181002

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 211    cataatcagtttccaaaagc 230
              ||||||||||||||||||||
Sbjct: 129818 cataatcagtttccaaaagc 129837
to top
>ref|XM_734749.1| Plasmodium chabaudi chabaudi ubiquitin activating enzyme,
           (PC000817.00.0) partial mRNA
          Length = 1398

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 513 tattggatatgcttgtccattata 536
           |||||||||| |||||||||||||
Sbjct: 453 tattggatatacttgtccattata 430
to top
>ref|XM_966756.1| PREDICTED: Tribolium castaneum similar to CG1915-PC, isoform C
             (LOC660533), mRNA
          Length = 62558

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 330   agaaaccaaaggaggaagaa 349
             ||||||||||||||||||||
Sbjct: 40196 agaaaccaaaggaggaagaa 40215
to top
>gb|AC166356.1| Mus musculus BAC clone RP23-410F8 from chromosome 15, complete sequence
          Length = 165082

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 211    cataatcagtttccaaaagc 230
              ||||||||||||||||||||
Sbjct: 118759 cataatcagtttccaaaagc 118740
to top
>gb|AC144770.1| Homo sapiens chromosome 19 clone XXfos-87852H4, complete sequence
          Length = 45852

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 462   attctcagcaacctaaacca 481
             ||||||||||||||||||||
Sbjct: 37247 attctcagcaacctaaacca 37228
to top
>gb|AC125062.5| Mus musculus BAC clone RP23-419P12 from chromosome 5, complete sequence
          Length = 187329

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 211   cataatcagtttccaaaagc 230
             ||||||||||||||||||||
Sbjct: 45422 cataatcagtttccaaaagc 45441
to top
>gb|AC092312.3| Homo sapiens chromosome 19 clone LLNLR-288G3, complete sequence
          Length = 40328

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 462   attctcagcaacctaaacca 481
             ||||||||||||||||||||
Sbjct: 17906 attctcagcaacctaaacca 17925
to top
>gb|AC023932.11| Homo sapiens chromosome 18, clone RP11-510D21, complete sequence
          Length = 166125

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 489    tcagatatcgtggagtagag 508
              ||||||||||||||||||||
Sbjct: 160999 tcagatatcgtggagtagag 161018
to top
>gb|AC091577.9| Homo sapiens chromosome 18, clone RP11-704J2, complete sequence
          Length = 158840

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 489   tcagatatcgtggagtagag 508
             ||||||||||||||||||||
Sbjct: 14220 tcagatatcgtggagtagag 14239
to top
>gb|AC091608.2| Homo sapiens chromosome 1 clone RP11-97O14, complete sequence
          Length = 154677

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 342   aggaagaattttgtttggaa 361
             ||||||||||||||||||||
Sbjct: 50917 aggaagaattttgtttggaa 50898
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 372      ttcatacttatgatgatgtt 391
                ||||||||||||||||||||
Sbjct: 20234192 ttcatacttatgatgatgtt 20234173
to top
>gb|AC158651.12| Mus musculus  BAC RP24-68I7 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 190089

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 47     ccaggctcagtgggaagaag 66
              ||||||||||||||||||||
Sbjct: 122218 ccaggctcagtgggaagaag 122199
to top
>gb|AC153613.9| Mus musculus 10 BAC RP23-23C9 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 214432

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 141    agcctaatgtgatgtgtgaa 160
              ||||||||||||||||||||
Sbjct: 184572 agcctaatgtgatgtgtgaa 184553
to top
>gb|DQ343599.1| Perna perna isolate Ven36 cytochrome oxidase subunit I (cox1) gene,
           partial cds; mitochondrial
          Length = 633

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 212 ataatcagtttccaaaagcc 231
           ||||||||||||||||||||
Sbjct: 168 ataatcagtttccaaaagcc 149
to top
>gb|DQ343597.1| Perna perna isolate Ven25 cytochrome oxidase subunit I (cox1) gene,
           partial cds; mitochondrial
          Length = 602

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 212 ataatcagtttccaaaagcc 231
           ||||||||||||||||||||
Sbjct: 202 ataatcagtttccaaaagcc 183
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>gb|DQ343609.1| Perna perna isolate SA4 NADH dehydrogenase subunit 4 (nad4) gene,
           partial cds; nad4-cox1 intergenic spacer, complete
           sequence; and cytochrome oxidase subunit I (cox1) gene,
           partial cds; mitochondrial
          Length = 1336

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 212 ataatcagtttccaaaagcc 231
           ||||||||||||||||||||
Sbjct: 936 ataatcagtttccaaaagcc 917
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>gb|DQ343607.1| Perna perna isolate SA2 NADH dehydrogenase subunit 4 (nad4) gene,
           partial cds; nad4-cox1 intergenic spacer, complete
           sequence; and cytochrome oxidase subunit I (cox1) gene,
           partial cds; mitochondrial
          Length = 1360

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 212 ataatcagtttccaaaagcc 231
           ||||||||||||||||||||
Sbjct: 938 ataatcagtttccaaaagcc 919
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>gb|DQ343606.1| Perna perna isolate SA1 NADH dehydrogenase subunit 4 (nad4) gene,
           partial cds; nad4-cox1 intergenic spacer, complete
           sequence; and cytochrome oxidase subunit I (cox1) gene,
           partial cds; mitochondrial
          Length = 1301

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 212 ataatcagtttccaaaagcc 231
           ||||||||||||||||||||
Sbjct: 924 ataatcagtttccaaaagcc 905
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>emb|AL132709.5|CNS01DTB Human chromosome 14 DNA sequence BAC R-909M7 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 200540

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 266    aaagatgttccttctttctt 285
              ||||||||||||||||||||
Sbjct: 141264 aaagatgttccttctttctt 141245
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>gb|AE016830.1| Enterococcus faecalis V583, complete genome
          Length = 3218031

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 159    aacatattgacaagaaactt 178
              ||||||||||||||||||||
Sbjct: 983687 aacatattgacaagaaactt 983668
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>emb|AL805899.20| Mouse DNA sequence from clone RP23-400P11 on chromosome 4, complete
             sequence
          Length = 204367

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   cataatcagtttccaaaagc 230
             ||||||||||||||||||||
Sbjct: 31962 cataatcagtttccaaaagc 31943
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>gb|AC171072.2| Rhesus Macaque CHR7 BAC CH250-508E7 (Children's Hospital Oakland
             Research Institute Rhesus macaque Adult Male BAC Library)
             complete sequence
          Length = 165491

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 47    ccaggctcagtgggaagaagcact 70
             ||||||||||||||||| ||||||
Sbjct: 86570 ccaggctcagtgggaaggagcact 86593
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>emb|AL928539.4| Mouse DNA sequence from clone RP23-152D24 on chromosome X, complete
             sequence
          Length = 165789

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   cataatcagtttccaaaagc 230
             ||||||||||||||||||||
Sbjct: 77374 cataatcagtttccaaaagc 77355
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>gb|AC167811.4| Mus musculus BAC clone RP24-286L8 from chromosome 5, complete sequence
          Length = 197711

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   cataatcagtttccaaaagc 230
             ||||||||||||||||||||
Sbjct: 91058 cataatcagtttccaaaagc 91039


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,498,386
Number of Sequences: 3902068
Number of extensions: 5498386
Number of successful extensions: 128437
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 128084
Number of HSP's gapped (non-prelim): 346
length of query: 601
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 578
effective length of database: 17,143,297,704
effective search space: 9908826072912
effective search space used: 9908826072912
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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