| Clone Name | basd12n13 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT016379.1| Zea mays clone Contig212 mRNA sequence Length = 1020 Score = 206 bits (104), Expect = 6e-50 Identities = 167/188 (88%) Strand = Plus / Plus Query: 205 ccggtgcagcacctgcagaaagagggtcgggctcaccggattcaactgccggtgcgggaa 264 |||||||||| ||||||| |||||||| |||||||| ||||||||||||||||| ||||| Sbjct: 445 ccggtgcagcgcctgcaggaagagggttgggctcacgggattcaactgccggtgtgggaa 504 Query: 265 cctctactgcgcgacgcaccgctactcggacaagcacgagtgcaagttcgactaccgcgc 324 | | ||||||||| ||||||||||| ||||||||||| ||||||||||||||||| | Sbjct: 505 cttgtactgcgcgctccaccgctactccgacaagcacgactgcaagttcgactaccggac 564 Query: 325 tgcggccatggacgccatcgccaaggccaacccggtggtgaaggcggagaagctcgacaa 384 ||| |||| ||||||||| |||||||| || |||||||||||||| || ||||||||||| Sbjct: 565 tgctgccagggacgccattgccaaggctaatccggtggtgaaggcagacaagctcgacaa 624 Query: 385 gatctagg 392 |||||||| Sbjct: 625 gatctagg 632 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 7 gaagcaggagcaggccaagctggccgcctcctcttttgacagcatcgtcaacgg 60 ||||||||| |||||||||||||| ||||||||| | ||||||||||| ||||| Sbjct: 232 gaagcaggatcaggccaagctggctgcctcctctatcgacagcatcgtgaacgg 285 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 563 tgttggctatgttgtgtaagc 583 ||||||||||||||||||||| Sbjct: 840 tgttggctatgttgtgtaagc 860
>gb|AY109331.1| Zea mays CL253_2 mRNA sequence Length = 2256 Score = 202 bits (102), Expect = 9e-49 Identities = 165/186 (88%) Strand = Plus / Plus Query: 205 ccggtgcagcacctgcagaaagagggtcgggctcaccggattcaactgccggtgcgggaa 264 |||||||||| ||||||| |||||||| |||||||| ||||||||||||||||| ||||| Sbjct: 1425 ccggtgcagcgcctgcaggaagagggttgggctcacgggattcaactgccggtgtgggaa 1484 Query: 265 cctctactgcgcgacgcaccgctactcggacaagcacgagtgcaagttcgactaccgcgc 324 | | ||||||||| ||||||||||| ||||||||||| ||||||||||||||||| | Sbjct: 1485 cttgtactgcgcgctccaccgctactccgacaagcacgactgcaagttcgactaccggac 1544 Query: 325 tgcggccatggacgccatcgccaaggccaacccggtggtgaaggcggagaagctcgacaa 384 ||| |||| ||||||||| |||||||| || |||||||||||||| || ||||||||||| Sbjct: 1545 tgctgccagggacgccattgccaaggctaatccggtggtgaaggcagacaagctcgacaa 1604 Query: 385 gatcta 390 |||||| Sbjct: 1605 gatcta 1610 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 7 gaagcaggagcaggccaagctggccgcctcctcttttgacagcatcgtcaacgg 60 ||||||||| |||||||||||||| ||||||||| | ||||||||||| ||||| Sbjct: 1212 gaagcaggatcaggccaagctggctgcctcctctatcgacagcatcgtgaacgg 1265
>gb|AY787873.1| Zea mays zinc finger protein (znf1) mRNA, complete cds Length = 1000 Score = 182 bits (92), Expect = 9e-43 Identities = 164/188 (87%) Strand = Plus / Plus Query: 205 ccggtgcagcacctgcagaaagagggtcgggctcaccggattcaactgccggtgcgggaa 264 |||||||||| ||||||| |||||||| || || || ||||||||||||||||| ||||| Sbjct: 429 ccggtgcagcgcctgcaggaagagggttggacttacgggattcaactgccggtgtgggaa 488 Query: 265 cctctactgcgcgacgcaccgctactcggacaagcacgagtgcaagttcgactaccgcgc 324 | | |||||||| ||||||||||| ||||||||||| ||||||||||||||||| | Sbjct: 489 cttgtactgcgcactccaccgctactccgacaagcacgactgcaagttcgactaccggac 548 Query: 325 tgcggccatggacgccatcgccaaggccaacccggtggtgaaggcggagaagctcgacaa 384 ||| |||| ||||||||| |||||||| || |||||||||||||| || ||||||||||| Sbjct: 549 tgctgccagggacgccattgccaaggctaatccggtggtgaaggcagacaagctcgacaa 608 Query: 385 gatctagg 392 |||||||| Sbjct: 609 gatctagg 616 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 7 gaagcaggagcaggccaagctggccgcctcctcttttgacagcatcgtcaacgg 60 ||||||||| |||||||||||||| ||||||||| | ||||||||||| ||||| Sbjct: 216 gaagcaggatcaggccaagctggctgcctcctctatcgacagcatcgtgaacgg 269 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 563 tgttggctatgttgtgtaagc 583 ||||||||||||||||||||| Sbjct: 822 tgttggctatgttgtgtaagc 842
>gb|BT017601.1| Zea mays clone EL01N0431H03.c mRNA sequence Length = 941 Score = 182 bits (92), Expect = 9e-43 Identities = 164/188 (87%) Strand = Plus / Plus Query: 205 ccggtgcagcacctgcagaaagagggtcgggctcaccggattcaactgccggtgcgggaa 264 |||||||||| ||||||| |||||||| |||||||| ||||||||||||||||| ||||| Sbjct: 451 ccggtgcagcgcctgcaggaagagggttgggctcacgggattcaactgccggtgtgggaa 510 Query: 265 cctctactgcgcgacgcaccgctactcggacaagcacgagtgcaagttcgactaccgcgc 324 | | ||||| ||| ||||| ||||| ||||||||||| ||||||||||||||||| | Sbjct: 511 cttgtactgggcgctccaccggtactccgacaagcacgactgcaagttcgactaccggac 570 Query: 325 tgcggccatggacgccatcgccaaggccaacccggtggtgaaggcggagaagctcgacaa 384 ||| |||| ||||||||| |||||||| || |||||||||||||| || ||||||| ||| Sbjct: 571 tgctgccagggacgccattgccaaggctaatccggtggtgaaggcagacaagctcgccaa 630 Query: 385 gatctagg 392 |||||||| Sbjct: 631 gatctagg 638 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 7 gaagcaggagcaggccaagctggccgcctcctcttttgacagcatcgtcaacgg 60 ||||||||| |||||||||||||| ||||||||| | ||||||||||| ||||| Sbjct: 238 gaagcaggatcaggccaagctggctgcctcctctatcgacagcatcgtgaacgg 291 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 563 tgttggctatgttgtgtaagc 583 ||||||||||||||||||||| Sbjct: 846 tgttggctatgttgtgtaagc 866
>ref|XM_506746.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1225_F07.15 mRNA Length = 1000 Score = 174 bits (88), Expect = 2e-40 Identities = 154/176 (87%) Strand = Plus / Plus Query: 215 acctgcagaaagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgc 274 ||||| || |||||||| ||||| || |||||||||||||||||||| ||| | ||||| Sbjct: 506 acctgtaggaagagggttgggctgacgggattcaactgccggtgcggtaacatgtactgt 565 Query: 275 gcgacgcaccgctactcggacaagcacgagtgcaagttcgactaccgcgctgcggccatg 334 ||| |||||||||||| |||||||| || ||| ||||||||||||| ||||||| | | Sbjct: 566 gcgttgcaccgctactccgacaagcatgaatgccagttcgactaccggactgcggctagg 625 Query: 335 gacgccatcgccaaggccaacccggtggtgaaggcggagaagctcgacaagatcta 390 || |||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 626 gatgccatcgccaaggccaacccagtggtgaaggctgagaagctcgacaagatcta 681 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 5 atgaagcaggagcaggccaagctggccgcctcctc 39 |||||| |||||||||||||||| || |||||||| Sbjct: 284 atgaaggaggagcaggccaagcttgctgcctcctc 318
>ref|XM_464458.1| Oryza sativa (japonica cultivar-group), mRNA Length = 991 Score = 174 bits (88), Expect = 2e-40 Identities = 154/176 (87%) Strand = Plus / Plus Query: 215 acctgcagaaagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgc 274 ||||| || |||||||| ||||| || |||||||||||||||||||| ||| | ||||| Sbjct: 489 acctgtaggaagagggttgggctgacgggattcaactgccggtgcggtaacatgtactgt 548 Query: 275 gcgacgcaccgctactcggacaagcacgagtgcaagttcgactaccgcgctgcggccatg 334 ||| |||||||||||| |||||||| || ||| ||||||||||||| ||||||| | | Sbjct: 549 gcgttgcaccgctactccgacaagcatgaatgccagttcgactaccggactgcggctagg 608 Query: 335 gacgccatcgccaaggccaacccggtggtgaaggcggagaagctcgacaagatcta 390 || |||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 609 gatgccatcgccaaggccaacccagtggtgaaggctgagaagctcgacaagatcta 664 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 5 atgaagcaggagcaggccaagctggccgcctcctc 39 |||||| |||||||||||||||| || |||||||| Sbjct: 267 atgaaggaggagcaggccaagcttgctgcctcctc 301
>gb|AY515607.1| Zea mays putative zinc finger protein ZmZf mRNA, complete cds Length = 1162 Score = 174 bits (88), Expect = 2e-40 Identities = 163/188 (86%) Strand = Plus / Plus Query: 205 ccggtgcagcacctgcagaaagagggtcgggctcaccggattcaactgccggtgcgggaa 264 |||||||||| ||||||| || ||||| || || || ||||||||||||||||| ||||| Sbjct: 621 ccggtgcagcgcctgcaggaaaagggttggacttacgggattcaactgccggtgtgggaa 680 Query: 265 cctctactgcgcgacgcaccgctactcggacaagcacgagtgcaagttcgactaccgcgc 324 | | |||||||| ||||||||||| ||||||||||| ||||||||||||||||| | Sbjct: 681 cttgtactgcgcactccaccgctactccgacaagcacgactgcaagttcgactaccggac 740 Query: 325 tgcggccatggacgccatcgccaaggccaacccggtggtgaaggcggagaagctcgacaa 384 ||| |||| ||||||||| |||||||| || |||||||||||||| || ||||||||||| Sbjct: 741 tgctgccagggacgccattgccaaggctaatccggtggtgaaggcagacaagctcgacaa 800 Query: 385 gatctagg 392 |||||||| Sbjct: 801 gatctagg 808 Score = 63.9 bits (32), Expect = 5e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 7 gaagcaggagcaggccaagctggccgcctcctcttttgacagcatcgt 54 ||||||||| |||||||||||||| ||||||||| | ||||||||||| Sbjct: 408 gaagcaggatcaggccaagctggctgcctcctctatcgacagcatcgt 455 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 563 tgttggctatgttgtgtaagc 583 ||||||||||||||||||||| Sbjct: 1017 tgttggctatgttgtgtaagc 1037
>dbj|AK061911.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-A06, full insert sequence Length = 991 Score = 174 bits (88), Expect = 2e-40 Identities = 154/176 (87%) Strand = Plus / Plus Query: 215 acctgcagaaagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgc 274 ||||| || |||||||| ||||| || |||||||||||||||||||| ||| | ||||| Sbjct: 489 acctgtaggaagagggttgggctgacgggattcaactgccggtgcggtaacatgtactgt 548 Query: 275 gcgacgcaccgctactcggacaagcacgagtgcaagttcgactaccgcgctgcggccatg 334 ||| |||||||||||| |||||||| || ||| ||||||||||||| ||||||| | | Sbjct: 549 gcgttgcaccgctactccgacaagcatgaatgccagttcgactaccggactgcggctagg 608 Query: 335 gacgccatcgccaaggccaacccggtggtgaaggcggagaagctcgacaagatcta 390 || |||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 609 gatgccatcgccaaggccaacccagtggtgaaggctgagaagctcgacaagatcta 664 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 5 atgaagcaggagcaggccaagctggccgcctcctc 39 |||||| |||||||||||||||| || |||||||| Sbjct: 267 atgaaggaggagcaggccaagcttgctgcctcctc 301
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 174 bits (88), Expect = 2e-40 Identities = 154/176 (87%) Strand = Plus / Minus Query: 215 acctgcagaaagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgc 274 ||||| || |||||||| ||||| || |||||||||||||||||||| ||| | ||||| Sbjct: 5346212 acctgtaggaagagggttgggctgacgggattcaactgccggtgcggtaacatgtactgt 5346153 Query: 275 gcgacgcaccgctactcggacaagcacgagtgcaagttcgactaccgcgctgcggccatg 334 ||| |||||||||||| |||||||| || ||| ||||||||||||| ||||||| | | Sbjct: 5346152 gcgttgcaccgctactccgacaagcatgaatgccagttcgactaccggactgcggctagg 5346093 Query: 335 gacgccatcgccaaggccaacccggtggtgaaggcggagaagctcgacaagatcta 390 || |||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 5346092 gatgccatcgccaaggccaacccagtggtgaaggctgagaagctcgacaagatcta 5346037 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 5 atgaagcaggagcaggccaagctggccgcctcctc 39 |||||| |||||||||||||||| || |||||||| Sbjct: 5346434 atgaaggaggagcaggccaagcttgctgcctcctc 5346400
>dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1225_F07 Length = 142772 Score = 174 bits (88), Expect = 2e-40 Identities = 154/176 (87%) Strand = Plus / Minus Query: 215 acctgcagaaagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgc 274 ||||| || |||||||| ||||| || |||||||||||||||||||| ||| | ||||| Sbjct: 72515 acctgtaggaagagggttgggctgacgggattcaactgccggtgcggtaacatgtactgt 72456 Query: 275 gcgacgcaccgctactcggacaagcacgagtgcaagttcgactaccgcgctgcggccatg 334 ||| |||||||||||| |||||||| || ||| ||||||||||||| ||||||| | | Sbjct: 72455 gcgttgcaccgctactccgacaagcatgaatgccagttcgactaccggactgcggctagg 72396 Query: 335 gacgccatcgccaaggccaacccggtggtgaaggcggagaagctcgacaagatcta 390 || |||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 72395 gatgccatcgccaaggccaacccagtggtgaaggctgagaagctcgacaagatcta 72340 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 5 atgaagcaggagcaggccaagctggccgcctcctc 39 |||||| |||||||||||||||| || |||||||| Sbjct: 72737 atgaaggaggagcaggccaagcttgctgcctcctc 72703
>dbj|AK067403.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106E09, full insert sequence Length = 1000 Score = 174 bits (88), Expect = 2e-40 Identities = 154/176 (87%) Strand = Plus / Plus Query: 215 acctgcagaaagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgc 274 ||||| || |||||||| ||||| || |||||||||||||||||||| ||| | ||||| Sbjct: 506 acctgtaggaagagggttgggctgacgggattcaactgccggtgcggtaacatgtactgt 565 Query: 275 gcgacgcaccgctactcggacaagcacgagtgcaagttcgactaccgcgctgcggccatg 334 ||| |||||||||||| |||||||| || ||| ||||||||||||| ||||||| | | Sbjct: 566 gcgttgcaccgctactccgacaagcatgaatgccagttcgactaccggactgcggctagg 625 Query: 335 gacgccatcgccaaggccaacccggtggtgaaggcggagaagctcgacaagatcta 390 || |||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 626 gatgccatcgccaaggccaacccagtggtgaaggctgagaagctcgacaagatcta 681 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 5 atgaagcaggagcaggccaagctggccgcctcctc 39 |||||| |||||||||||||||| || |||||||| Sbjct: 284 atgaaggaggagcaggccaagcttgctgcctcctc 318
>gb|AY105867.1| Zea mays PCO143262 mRNA sequence Length = 984 Score = 115 bits (58), Expect = 2e-22 Identities = 121/142 (85%) Strand = Plus / Plus Query: 248 aactgccggtgcgggaacctctactgcgcgacgcaccgctactcggacaagcacgagtgc 307 |||||||| ||||||||| ||||| ||| |||||||||||| ||||| ||||| ||| Sbjct: 461 aactgccgatgcgggaacacgtactgttcgatgcaccgctactccgacaaacacgactgc 520 Query: 308 aagttcgactaccgcgctgcggccatggacgccatcgccaaggccaacccggtggtgaag 367 |||||||||| || |||| || | |||||| |||||||||||||| || ||||||||| Sbjct: 521 cagttcgactatcgaactgcagctagggacgctatcgccaaggccaatccagtggtgaag 580 Query: 368 gcggagaagctcgacaagatct 389 ||||||||||| |||||||||| Sbjct: 581 gcggagaagcttgacaagatct 602 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 5 atgaagcaggagcaggccaagctggccgcctcctc 39 |||||||||||||||||| || |||| |||||||| Sbjct: 212 atgaagcaggagcaggcccagttggctgcctcctc 246
>gb|BT019326.1| Zea mays clone Contig1045.F mRNA sequence Length = 779 Score = 91.7 bits (46), Expect = 2e-15 Identities = 142/174 (81%) Strand = Plus / Plus Query: 216 cctgcagaaagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgcg 275 ||||||| ||| | || ||||| || ||||| | |||||| ||||||||| | ||||| Sbjct: 118 cctgcaggaagcgtgttgggctgacgggatttagctgccgatgcgggaacatgtactgtt 177 Query: 276 cgacgcaccgctactcggacaagcacgagtgcaagttcgactaccgcgctgcggccatgg 335 || |||||||||||| ||||| || || || |||||||||| || |||| || | || Sbjct: 178 cggtgcaccgctactccgacaaacatgactgtcagttcgactatcggactgcagcaaggg 237 Query: 336 acgccatcgccaaggccaacccggtggtgaaggcggagaagctcgacaagatct 389 |||| || ||||||||||| || ||||||| ||||||||||||||||||||||| Sbjct: 238 acgcgattgccaaggccaatcctgtggtgagggcggagaagctcgacaagatct 291
>gb|AY105966.1| Zea mays PCO143261 mRNA sequence Length = 1035 Score = 91.7 bits (46), Expect = 2e-15 Identities = 142/174 (81%) Strand = Plus / Plus Query: 216 cctgcagaaagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgcg 275 ||||||| ||| | || ||||| || ||||| | |||||| ||||||||| | ||||| Sbjct: 430 cctgcaggaagcgtgttgggctgacgggatttagctgccgatgcgggaacatgtactgtt 489 Query: 276 cgacgcaccgctactcggacaagcacgagtgcaagttcgactaccgcgctgcggccatgg 335 || |||||||||||| ||||| || || || |||||||||| || |||| || | || Sbjct: 490 cggtgcaccgctactccgacaaacatgactgtcagttcgactatcggactgcagcaaggg 549 Query: 336 acgccatcgccaaggccaacccggtggtgaaggcggagaagctcgacaagatct 389 |||| || ||||||||||| || ||||||| ||||||||||||||||||||||| Sbjct: 550 acgcgattgccaaggccaatcctgtggtgagggcggagaagctcgacaagatct 603 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Plus Query: 7 gaagcaggagcaggccaagctggccgcctcctc 39 |||||||||||||||| ||||||| |||||||| Sbjct: 215 gaagcaggagcaggcccagctggctgcctcctc 247
>gb|AY345599.2| Oryza sativa (indica cultivar-group) stress-associated protein-3 (SAP-3) mRNA, complete cds Length = 1132 Score = 77.8 bits (39), Expect = 4e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 5 atgaagcaggagcaggccaagctggccgcctcctcttttgacagcatcgtcaacggtgg 63 |||||||||||||||||||||||||| ||||||||| | |||||||| ||||| ||||| Sbjct: 184 atgaagcaggagcaggccaagctggcagcctcctctatcgacagcattgtcaatggtgg 242 Score = 73.8 bits (37), Expect = 6e-10 Identities = 130/161 (80%) Strand = Plus / Plus Query: 224 aagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgcgcgacgcac 283 |||||||| || || ||||||||||||||||| || || ||| | |||||||| | |||| Sbjct: 409 aagagggttggtcttaccggattcaactgccgatgtggcaacttgtactgcgcaatgcac 468 Query: 284 cgctactcggacaagcacgagtgcaagttcgactaccgcgctgcggccatggacgccatc 343 ||||| || || ||||| || ||| |||| ||||| || | || || | ||| || || Sbjct: 469 cgctattccgataagcatgactgccagtttgactatcggaccgctgctagggatgctatt 528 Query: 344 gccaaggccaacccggtggtgaaggcggagaagctcgacaa 384 |||||||| || |||||||||||||||||||| || ||||| Sbjct: 529 gccaaggctaatccggtggtgaaggcggagaaacttgacaa 569 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 563 tgttggctatgttgtgtaagc 583 ||||||||||||||||||||| Sbjct: 762 tgttggctatgttgtgtaagc 782
>gb|DQ083230.1| Oryza sativa (indica cultivar-group) clone 3B12G81 mRNA sequence Length = 449 Score = 77.8 bits (39), Expect = 4e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 5 atgaagcaggagcaggccaagctggccgcctcctcttttgacagcatcgtcaacggtgg 63 |||||||||||||||||||||||||| ||||||||| | |||||||| ||||| ||||| Sbjct: 179 atgaagcaggagcaggccaagctggcagcctcctctatcgacagcattgtcaatggtgg 237 Score = 40.1 bits (20), Expect = 7.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 224 aagagggtcgggctcaccggattcaactgccg 255 |||||||| || || ||||||||||||||||| Sbjct: 404 aagagggttggtcttaccggattcaactgccg 435
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 77.8 bits (39), Expect = 4e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 5 atgaagcaggagcaggccaagctggccgcctcctcttttgacagcatcgtcaacggtgg 63 |||||||||||||||||||||||||| ||||||||| | |||||||| ||||| ||||| Sbjct: 24109529 atgaagcaggagcaggccaagctggcagcctcctctatcgacagcattgtcaatggtgg 24109587 Score = 73.8 bits (37), Expect = 6e-10 Identities = 130/161 (80%) Strand = Plus / Plus Query: 224 aagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgcgcgacgcac 283 |||||||| || || ||||||||||||||||| || || ||| | |||||||| | |||| Sbjct: 24109754 aagagggttggtcttaccggattcaactgccgatgtggcaacttgtactgcgcaatgcac 24109813 Query: 284 cgctactcggacaagcacgagtgcaagttcgactaccgcgctgcggccatggacgccatc 343 ||||| || || ||||| || ||| |||| ||||| || | || || | ||| || || Sbjct: 24109814 cgctattccgataagcatgactgccagtttgactatcggaccgctgctagggatgctatt 24109873 Query: 344 gccaaggccaacccggtggtgaaggcggagaagctcgacaa 384 |||||||| || |||||||||||||||||||| || ||||| Sbjct: 24109874 gccaaggctaatccggtggtgaaggcggagaaacttgacaa 24109914 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 563 tgttggctatgttgtgtaagc 583 ||||||||||||||||||||| Sbjct: 24110107 tgttggctatgttgtgtaagc 24110127
>dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417G12 Length = 163568 Score = 77.8 bits (39), Expect = 4e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 5 atgaagcaggagcaggccaagctggccgcctcctcttttgacagcatcgtcaacggtgg 63 |||||||||||||||||||||||||| ||||||||| | |||||||| ||||| ||||| Sbjct: 42987 atgaagcaggagcaggccaagctggcagcctcctctatcgacagcattgtcaatggtgg 43045 Score = 73.8 bits (37), Expect = 6e-10 Identities = 130/161 (80%) Strand = Plus / Plus Query: 224 aagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgcgcgacgcac 283 |||||||| || || ||||||||||||||||| || || ||| | |||||||| | |||| Sbjct: 43212 aagagggttggtcttaccggattcaactgccgatgtggcaacttgtactgcgcaatgcac 43271 Query: 284 cgctactcggacaagcacgagtgcaagttcgactaccgcgctgcggccatggacgccatc 343 ||||| || || ||||| || ||| |||| ||||| || | || || | ||| || || Sbjct: 43272 cgctattccgataagcatgactgccagtttgactatcggaccgctgctagggatgctatt 43331 Query: 344 gccaaggccaacccggtggtgaaggcggagaagctcgacaa 384 |||||||| || |||||||||||||||||||| || ||||| Sbjct: 43332 gccaaggctaatccggtggtgaaggcggagaaacttgacaa 43372 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 563 tgttggctatgttgtgtaagc 583 ||||||||||||||||||||| Sbjct: 43565 tgttggctatgttgtgtaagc 43585
>dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0429G06 Length = 158321 Score = 77.8 bits (39), Expect = 4e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 5 atgaagcaggagcaggccaagctggccgcctcctcttttgacagcatcgtcaacggtgg 63 |||||||||||||||||||||||||| ||||||||| | |||||||| ||||| ||||| Sbjct: 119222 atgaagcaggagcaggccaagctggcagcctcctctatcgacagcattgtcaatggtgg 119280 Score = 73.8 bits (37), Expect = 6e-10 Identities = 130/161 (80%) Strand = Plus / Plus Query: 224 aagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgcgcgacgcac 283 |||||||| || || ||||||||||||||||| || || ||| | |||||||| | |||| Sbjct: 119447 aagagggttggtcttaccggattcaactgccgatgtggcaacttgtactgcgcaatgcac 119506 Query: 284 cgctactcggacaagcacgagtgcaagttcgactaccgcgctgcggccatggacgccatc 343 ||||| || || ||||| || ||| |||| ||||| || | || || | ||| || || Sbjct: 119507 cgctattccgataagcatgactgccagtttgactatcggaccgctgctagggatgctatt 119566 Query: 344 gccaaggccaacccggtggtgaaggcggagaagctcgacaa 384 |||||||| || |||||||||||||||||||| || ||||| Sbjct: 119567 gccaaggctaatccggtggtgaaggcggagaaacttgacaa 119607 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 563 tgttggctatgttgtgtaagc 583 ||||||||||||||||||||| Sbjct: 119800 tgttggctatgttgtgtaagc 119820
>dbj|AK104562.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-D03, full insert sequence Length = 999 Score = 77.8 bits (39), Expect = 4e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 5 atgaagcaggagcaggccaagctggccgcctcctcttttgacagcatcgtcaacggtgg 63 |||||||||||||||||||||||||| ||||||||| | |||||||| ||||| ||||| Sbjct: 273 atgaagcaggagcaggccaagctggcagcctcctctatcgacagcattgtcaatggtgg 331 Score = 73.8 bits (37), Expect = 6e-10 Identities = 130/161 (80%) Strand = Plus / Plus Query: 224 aagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgcgcgacgcac 283 |||||||| || || ||||||||||||||||| || || ||| | |||||||| | |||| Sbjct: 498 aagagggttggtcttaccggattcaactgccgatgtggcaacttgtactgcgcaatgcac 557 Query: 284 cgctactcggacaagcacgagtgcaagttcgactaccgcgctgcggccatggacgccatc 343 ||||| || || ||||| || ||| |||| ||||| || | || || | ||| || || Sbjct: 558 cgctattccgataagcatgactgccagtttgactatcggaccgctgctagggatgctatt 617 Query: 344 gccaaggccaacccggtggtgaaggcggagaagctcgacaa 384 |||||||| || |||||||||||||||||||| || ||||| Sbjct: 618 gccaaggctaatccggtggtgaaggcggagaaacttgacaa 658 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 563 tgttggctatgttgtgtaagc 583 ||||||||||||||||||||| Sbjct: 851 tgttggctatgttgtgtaagc 871
>dbj|AK104605.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-A12, full insert sequence Length = 1009 Score = 77.8 bits (39), Expect = 4e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 5 atgaagcaggagcaggccaagctggccgcctcctcttttgacagcatcgtcaacggtgg 63 |||||||||||||||||||||||||| ||||||||| | |||||||| ||||| ||||| Sbjct: 273 atgaagcaggagcaggccaagctggcagcctcctctatcgacagcattgtcaatggtgg 331 Score = 73.8 bits (37), Expect = 6e-10 Identities = 130/161 (80%) Strand = Plus / Plus Query: 224 aagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgcgcgacgcac 283 |||||||| || || ||||||||||||||||| || || ||| | |||||||| | |||| Sbjct: 498 aagagggttggtcttaccggattcaactgccgatgtggcaacttgtactgcgcaatgcac 557 Query: 284 cgctactcggacaagcacgagtgcaagttcgactaccgcgctgcggccatggacgccatc 343 ||||| || || ||||| || ||| |||| ||||| || | || || | ||| || || Sbjct: 558 cgctattccgataagcatgactgccagtttgactatcggaccgctgctagggatgctatt 617 Query: 344 gccaaggccaacccggtggtgaaggcggagaagctcgacaa 384 |||||||| || |||||||||||||||||||| || ||||| Sbjct: 618 gccaaggctaatccggtggtgaaggcggagaaacttgacaa 658 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 563 tgttggctatgttgtgtaagc 583 ||||||||||||||||||||| Sbjct: 851 tgttggctatgttgtgtaagc 871
>dbj|AK104175.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C11, full insert sequence Length = 1000 Score = 77.8 bits (39), Expect = 4e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 5 atgaagcaggagcaggccaagctggccgcctcctcttttgacagcatcgtcaacggtgg 63 |||||||||||||||||||||||||| ||||||||| | |||||||| ||||| ||||| Sbjct: 274 atgaagcaggagcaggccaagctggcagcctcctctatcgacagcattgtcaatggtgg 332 Score = 73.8 bits (37), Expect = 6e-10 Identities = 130/161 (80%) Strand = Plus / Plus Query: 224 aagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgcgcgacgcac 283 |||||||| || || ||||||||||||||||| || || ||| | |||||||| | |||| Sbjct: 499 aagagggttggtcttaccggattcaactgccgatgtggcaacttgtactgcgcaatgcac 558 Query: 284 cgctactcggacaagcacgagtgcaagttcgactaccgcgctgcggccatggacgccatc 343 ||||| || || ||||| || ||| |||| ||||| || | || || | ||| || || Sbjct: 559 cgctattccgataagcatgactgccagtttgactatcggaccgctgctagggatgctatt 618 Query: 344 gccaaggccaacccggtggtgaaggcggagaagctcgacaa 384 |||||||| || |||||||||||||||||||| || ||||| Sbjct: 619 gccaaggctaatccggtggtgaaggcggagaaacttgacaa 659 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 563 tgttggctatgttgtgtaagc 583 ||||||||||||||||||||| Sbjct: 852 tgttggctatgttgtgtaagc 872
>dbj|AK069720.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026K20, full insert sequence Length = 1209 Score = 77.8 bits (39), Expect = 4e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 5 atgaagcaggagcaggccaagctggccgcctcctcttttgacagcatcgtcaacggtgg 63 |||||||||||||||||||||||||| ||||||||| | |||||||| ||||| ||||| Sbjct: 271 atgaagcaggagcaggccaagctggcagcctcctctatcgacagcattgtcaatggtgg 329 Score = 73.8 bits (37), Expect = 6e-10 Identities = 130/161 (80%) Strand = Plus / Plus Query: 224 aagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgcgcgacgcac 283 |||||||| || || ||||||||||||||||| || || ||| | |||||||| | |||| Sbjct: 496 aagagggttggtcttaccggattcaactgccgatgtggcaacttgtactgcgcaatgcac 555 Query: 284 cgctactcggacaagcacgagtgcaagttcgactaccgcgctgcggccatggacgccatc 343 ||||| || || ||||| || ||| |||| ||||| || | || || | ||| || || Sbjct: 556 cgctattccgataagcatgactgccagtttgactatcggaccgctgctagggatgctatt 615 Query: 344 gccaaggccaacccggtggtgaaggcggagaagctcgacaa 384 |||||||| || |||||||||||||||||||| || ||||| Sbjct: 616 gccaaggctaatccggtggtgaaggcggagaaacttgacaa 656 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 563 tgttggctatgttgtgtaagc 583 ||||||||||||||||||||| Sbjct: 849 tgttggctatgttgtgtaagc 869
>dbj|AK060008.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-C08, full insert sequence Length = 1021 Score = 77.8 bits (39), Expect = 4e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 5 atgaagcaggagcaggccaagctggccgcctcctcttttgacagcatcgtcaacggtgg 63 |||||||||||||||||||||||||| ||||||||| | |||||||| ||||| ||||| Sbjct: 270 atgaagcaggagcaggccaagctggcagcctcctctatcgacagcattgtcaatggtgg 328 Score = 73.8 bits (37), Expect = 6e-10 Identities = 130/161 (80%) Strand = Plus / Plus Query: 224 aagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgcgcgacgcac 283 |||||||| || || ||||||||||||||||| || || ||| | |||||||| | |||| Sbjct: 495 aagagggttggtcttaccggattcaactgccgatgtggcaacttgtactgcgcaatgcac 554 Query: 284 cgctactcggacaagcacgagtgcaagttcgactaccgcgctgcggccatggacgccatc 343 ||||| || || ||||| || ||| |||| ||||| || | || || | ||| || || Sbjct: 555 cgctattccgataagcatgactgccagtttgactatcggaccgctgctagggatgctatt 614 Query: 344 gccaaggccaacccggtggtgaaggcggagaagctcgacaa 384 |||||||| || |||||||||||||||||||| || ||||| Sbjct: 615 gccaaggctaatccggtggtgaaggcggagaaacttgacaa 655 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 563 tgttggctatgttgtgtaagc 583 ||||||||||||||||||||| Sbjct: 848 tgttggctatgttgtgtaagc 868
>dbj|AK062342.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-F03, full insert sequence Length = 631 Score = 73.8 bits (37), Expect = 6e-10 Identities = 130/161 (80%) Strand = Plus / Plus Query: 224 aagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgcgcgacgcac 283 |||||||| || || ||||||||||||||||| || || ||| | |||||||| | |||| Sbjct: 137 aagagggttggtcttaccggattcaactgccgatgtggcaacttgtactgcgcaatgcac 196 Query: 284 cgctactcggacaagcacgagtgcaagttcgactaccgcgctgcggccatggacgccatc 343 ||||| || || ||||| || ||| |||| ||||| || | || || | ||| || || Sbjct: 197 cgctattccgataagcatgactgccagtttgactatcggaccgctgctagggatgctatt 256 Query: 344 gccaaggccaacccggtggtgaaggcggagaagctcgacaa 384 |||||||| || |||||||||||||||||||| || ||||| Sbjct: 257 gccaaggctaatccggtggtgaaggcggagaaacttgacaa 297 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 563 tgttggctatgttgtgtaagc 583 ||||||||||||||||||||| Sbjct: 490 tgttggctatgttgtgtaagc 510
>gb|DQ083231.1| Oryza sativa (indica cultivar-group) clone 5B6A82 mRNA sequence Length = 391 Score = 54.0 bits (27), Expect = 5e-04 Identities = 93/115 (80%) Strand = Plus / Plus Query: 270 actgcgcgacgcaccgctactcggacaagcacgagtgcaagttcgactaccgcgctgcgg 329 ||||||| ||||||||||| || || ||||| || ||| |||| ||||| || | || | Sbjct: 1 actgcgcaacgcaccgctattccgataagcatgactgccagtttgactatcggaccgctg 60 Query: 330 ccatggacgccatcgccaaggccaacccggtggtgaaggcggagaagctcgacaa 384 | | ||| || || |||||||| || |||||||||||||||||||| || ||||| Sbjct: 61 ctagggatgctattgccaaggctaatccggtggtgaaggcggagaaacttgacaa 115 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 563 tgttggctatgttgtgtaagc 583 ||||||||||||||||||||| Sbjct: 308 tgttggctatgttgtgtaagc 328
>gb|DQ083227.1| Oryza sativa (indica cultivar-group) clone 2B5A77 mRNA sequence Length = 391 Score = 50.1 bits (25), Expect = 0.008 Identities = 91/113 (80%) Strand = Plus / Plus Query: 272 tgcgcgacgcaccgctactcggacaagcacgagtgcaagttcgactaccgcgctgcggcc 331 ||||| ||||||||||| || || ||||| || ||| |||| ||||| || | || || Sbjct: 3 tgcgcaacgcaccgctattccgataagcatgactgccagtttgactatcggaccgctgct 62 Query: 332 atggacgccatcgccaaggccaacccggtggtgaaggcggagaagctcgacaa 384 | ||| || || |||||||| || |||||||||||||||||||| || ||||| Sbjct: 63 agggatgctattgccaaggctaatccggtggtgaaggcggagaaacttgacaa 115 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 563 tgttggctatgttgtgtaagc 583 ||||||||||||||||||||| Sbjct: 308 tgttggctatgttgtgtaagc 328
>dbj|AP006864.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT18I21, TM1144, complete sequence Length = 135217 Score = 50.1 bits (25), Expect = 0.008 Identities = 43/49 (87%) Strand = Plus / Minus Query: 341 atcgccaaggccaacccggtggtgaaggcggagaagctcgacaagatct 389 ||||| ||||| |||||||||||||||| |||||||| ||||||||| Sbjct: 38700 atcgcgaaggcgaacccggtggtgaagggtgagaagctgaacaagatct 38652
>gb|AY137590.1| Oryza sativa (indica cultivar-group) multiple stress-associated zinc-finger protein (OSISAP1) gene, complete cds Length = 3139 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Plus Query: 334 ggacgccatcgccaaggccaacccggtggtg 364 |||||||||||||| || ||||||||||||| Sbjct: 2900 ggacgccatcgccagggacaacccggtggtg 2930
>gb|AF140722.2| Oryza sativa (indica cultivar-group) multiple stress-responsive zinc-finger protein mRNA, complete cds Length = 844 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Plus Query: 334 ggacgccatcgccaaggccaacccggtggtg 364 |||||||||||||| || ||||||||||||| Sbjct: 547 ggacgccatcgccagggacaacccggtggtg 577
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Plus Query: 334 ggacgccatcgccaaggccaacccggtggtg 364 |||||||||||||| || ||||||||||||| Sbjct: 18592194 ggacgccatcgccagggacaacccggtggtg 18592224
>dbj|AK119793.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-175-B06, full insert sequence Length = 708 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Plus Query: 334 ggacgccatcgccaaggccaacccggtggtg 364 |||||||||||||| || ||||||||||||| Sbjct: 564 ggacgccatcgccagggacaacccggtggtg 594
>dbj|AK106128.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-F08, full insert sequence Length = 914 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Plus Query: 334 ggacgccatcgccaaggccaacccggtggtg 364 |||||||||||||| || ||||||||||||| Sbjct: 560 ggacgccatcgccagggacaacccggtggtg 590
>dbj|AK070140.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042G11, full insert sequence Length = 860 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Plus Query: 334 ggacgccatcgccaaggccaacccggtggtg 364 |||||||||||||| || ||||||||||||| Sbjct: 565 ggacgccatcgccagggacaacccggtggtg 595
>dbj|AK061067.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-B12, full insert sequence Length = 870 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Plus Query: 334 ggacgccatcgccaaggccaacccggtggtg 364 |||||||||||||| || ||||||||||||| Sbjct: 564 ggacgccatcgccagggacaacccggtggtg 594
>ref|NM_115140.2| Arabidopsis thaliana DNA binding / zinc ion binding AT3G52800 mRNA, complete cds Length = 1129 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Plus Query: 228 gggtcgggctcaccggattcaactgccggtgcgg 261 |||||||| | ||||||||||| ||||||||||| Sbjct: 602 gggtcgggttaaccggattcaagtgccggtgcgg 635
>ref|XM_416311.1| PREDICTED: Gallus gallus similar to DIP13 beta; adaptor protein containing PH domain, PTB domain and leucine zipper motif 2 (LOC418075), mRNA Length = 3201 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 77 gagcaccttgctgctggcagcacagc 102 |||| ||||||||||||||||||||| Sbjct: 2268 gagccccttgctgctggcagcacagc 2293
>gb|AC137585.3| Mus musculus BAC clone RP23-355I23 from chromosome 18, complete sequence Length = 216041 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 555 ggtctccttgttggctatgttg 576 |||||||||||||||||||||| Sbjct: 81350 ggtctccttgttggctatgttg 81329
>emb|AL353912.1|ATF3C22 Arabidopsis thaliana DNA chromosome 3, BAC clone F3C22 Length = 100028 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Plus Query: 228 gggtcgggctcaccggattcaactgccggtgcgg 261 |||||||| | ||||||||||| ||||||||||| Sbjct: 90635 gggtcgggttaaccggattcaagtgccggtgcgg 90668
>gb|AY072524.1| Arabidopsis thaliana zinc finger-like protein (At3g52800; F3C22_200) mRNA, complete cds Length = 541 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Plus Query: 228 gggtcgggctcaccggattcaactgccggtgcgg 261 |||||||| | ||||||||||| ||||||||||| Sbjct: 347 gggtcgggttaaccggattcaagtgccggtgcgg 380
>gb|AY042871.1| Arabidopsis thaliana zinc finger-like protein (F3C22_200) mRNA, complete cds Length = 871 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Plus Query: 228 gggtcgggctcaccggattcaactgccggtgcgg 261 |||||||| | ||||||||||| ||||||||||| Sbjct: 439 gggtcgggttaaccggattcaagtgccggtgcgg 472
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 353 aacccggtggtgaaggcggaga 374 |||||||||||||||||||||| Sbjct: 28232438 aacccggtggtgaaggcggaga 28232417
>dbj|AP004570.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0625E02 Length = 153921 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 353 aacccggtggtgaaggcggaga 374 |||||||||||||||||||||| Sbjct: 87983 aacccggtggtgaaggcggaga 87962
>gb|AC093467.10| Mus musculus chromosome 12, clone RP23-9A4, complete sequence Length = 236969 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 86 gctgctggcagcacagcggtgg 107 |||||||||||||||||||||| Sbjct: 198806 gctgctggcagcacagcggtgg 198827
>gb|AC124471.4| Mus musculus BAC clone RP24-79D7 from 12, complete sequence Length = 179503 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 86 gctgctggcagcacagcggtgg 107 |||||||||||||||||||||| Sbjct: 8422 gctgctggcagcacagcggtgg 8443
>gb|AC145942.4| Gallus gallus BAC clone CH261-21I23 from chromosome unknown, complete sequence Length = 228603 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 77 gagcaccttgctgctggcagcacagc 102 |||| ||||||||||||||||||||| Sbjct: 79122 gagccccttgctgctggcagcacagc 79147
>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome Length = 2971517 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 328 ggccatggacgccatcgccaaggcc 352 ||||||||| ||||||||||||||| Sbjct: 801439 ggccatggaggccatcgccaaggcc 801463
>emb|BX908807.1| Neurospora crassa DNA linkage group III BAC contig B13B7 Length = 93134 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 cagcgaggcggccatggagag 189 ||||||||||||||||||||| Sbjct: 87794 cagcgaggcggccatggagag 87774
>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16 Length = 343473 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 335 gacgccatcgccaaggccaac 355 ||||||||||||||||||||| Sbjct: 69376 gacgccatcgccaaggccaac 69356
>emb|BX640435.1| Bordetella parapertussis strain 12822, complete genome; segment 13/14 Length = 346259 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 335 gacgccatcgccaaggccaac 355 ||||||||||||||||||||| Sbjct: 334200 gacgccatcgccaaggccaac 334180
>emb|BX640412.1| Bordetella pertussis strain Tohama I, complete genome; segment 2/12 Length = 348171 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 335 gacgccatcgccaaggccaac 355 ||||||||||||||||||||| Sbjct: 15235 gacgccatcgccaaggccaac 15255
>emb|BX296566.5| Zebrafish DNA sequence from clone CH211-196F4 in linkage group 11, complete sequence Length = 128109 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 445 cgtgcgtctttgctgcattat 465 ||||||||||||||||||||| Sbjct: 58828 cgtgcgtctttgctgcattat 58808
>gb|AY106416.1| Zea mays PCO123428 mRNA sequence Length = 744 Score = 42.1 bits (21), Expect = 2.0 Identities = 66/81 (81%) Strand = Plus / Plus Query: 215 acctgcagaaagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgc 274 |||||| | ||| |||| |||||||| || ||| |||||| ||||| |||||| |||| Sbjct: 33 acctgccgcaagcgggtggggctcacgggcttccgctgccgctgcggagacctcttctgc 92 Query: 275 gcgacgcaccgctactcggac 295 | ||||||||||||||||| Sbjct: 93 ggcgcgcaccgctactcggac 113
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 357 cggtggtgaaggcggagaagc 377 ||||||||||||||||||||| Sbjct: 199136 cggtggtgaaggcggagaagc 199156
>ref|XM_527724.1| PREDICTED: Pan troglodytes similar to T-cell receptor gamma chain V region V108A precursor (LOC472349), mRNA Length = 1371 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 ctgcggccatggacgccatc 343 |||||||||||||||||||| Sbjct: 447 ctgcggccatggacgccatc 466
>gb|AC146423.3| Pan troglodytes BAC clone RP43-25L18 from 7, complete sequence Length = 158864 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 528 gcctcggcggcagccccagg 547 |||||||||||||||||||| Sbjct: 41200 gcctcggcggcagccccagg 41181
>gb|AC148833.5| Pan troglodytes BAC clone CH251-55M19 from chromosome 7, complete sequence Length = 206418 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 528 gcctcggcggcagccccagg 547 |||||||||||||||||||| Sbjct: 88273 gcctcggcggcagccccagg 88254
>ref|NG_001336.2| Homo sapiens T cell receptor gamma locus (TRG@) on chromosome 7 Length = 140728 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 ctgcggccatggacgccatc 343 |||||||||||||||||||| Sbjct: 62403 ctgcggccatggacgccatc 62422
>gb|AE007288.1| Sinorhizobium meliloti 1021 plasmid pSymA section 94 of 121 of the complete plasmid sequence Length = 10943 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 523 cacgcgcctcggcggcagcc 542 |||||||||||||||||||| Sbjct: 9594 cacgcgcctcggcggcagcc 9575
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 ccatcgccaaggccaacccg 358 |||||||||||||||||||| Sbjct: 3710404 ccatcgccaaggccaacccg 3710423
>gb|AC006033.2| Homo sapiens BAC clone RP11-121A8 from 7, complete sequence Length = 171816 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ctgcggccatggacgccatc 343 |||||||||||||||||||| Sbjct: 132444 ctgcggccatggacgccatc 132425
>emb|CR853300.3| Wallaby DNA sequence from clone MEKBa-585D22, complete sequence Length = 165531 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 tgcagcacctgcagaaagag 228 |||||||||||||||||||| Sbjct: 163125 tgcagcacctgcagaaagag 163144
>gb|AC005535.2| Homo sapiens PAC clone RP5-1168M19 from 7, complete sequence Length = 157813 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 528 gcctcggcggcagccccagg 547 |||||||||||||||||||| Sbjct: 149842 gcctcggcggcagccccagg 149823
>ref|XM_502694.1| Yarrowia lipolytica CLIB122, YALI0D11330g predicted mRNA Length = 876 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 gacgccatcgccaaggccaa 354 |||||||||||||||||||| Sbjct: 598 gacgccatcgccaaggccaa 617
>emb|AL158055.12| Human DNA sequence from clone RP11-348F1 on chromosome Xp11.1-11.22 Contains the NUDT11 gene for nudix (nucleoside diphosphate linked moiety X)-type motif 11, two novel genes, the NUDT10 gene for nudix (nucleoside diphosphate linked moiety X)-type motif 10 and three CpG islands, complete sequence Length = 184873 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 525 cgcgcctcggcggcagccccaggt 548 |||||||||||||||||| ||||| Sbjct: 103024 cgcgcctcggcggcagccacaggt 103047
>gb|AE005753.1| Caulobacter crescentus CB15 section 79 of 359 of the complete genome Length = 10329 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 agcaggccaagctggccgcc 34 |||||||||||||||||||| Sbjct: 2795 agcaggccaagctggccgcc 2776
>dbj|AK165988.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched library, clone:G730027B12 product:Similar to serine/threonine kinase 35 (Fragment) homolog [Mus musculus], full insert sequence Length = 5324 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 ggtggtgaaggcggagaagc 377 |||||||||||||||||||| Sbjct: 4021 ggtggtgaaggcggagaagc 4040
>gb|AF159056.1|AF159056 Homo sapiens T-cell gamma receptor locus, complete sequence Length = 140691 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 ctgcggccatggacgccatc 343 |||||||||||||||||||| Sbjct: 62398 ctgcggccatggacgccatc 62417
>dbj|AK085193.1| Mus musculus 13 days embryo stomach cDNA, RIKEN full-length enriched library, clone:D530005H18 product:unclassifiable, full insert sequence Length = 3788 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 ggtggtgaaggcggagaagc 377 |||||||||||||||||||| Sbjct: 2488 ggtggtgaaggcggagaagc 2507
>dbj|AK053817.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130309P10 product:unclassifiable, full insert sequence Length = 3812 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 tggcagcacagcggtggcag 110 |||||||||||||||||||| Sbjct: 3100 tggcagcacagcggtggcag 3081
>gb|AC155640.5| Mus musculus 10 BAC RP24-87H21 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 222712 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 tggcagcacagcggtggcag 110 |||||||||||||||||||| Sbjct: 182206 tggcagcacagcggtggcag 182225
>gb|AF222338.1|AF222338 Rattus norvegicus voltage gated N-type calcium channel alpha1B gene, partial cds, alternatively spliced Length = 6340 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 462 ttatcctttcatcatgctggcttc 485 |||||||||| ||||||||||||| Sbjct: 2282 ttatcctttcctcatgctggcttc 2259
>emb|AL671536.8| Mouse DNA sequence from clone RP23-291O10 on chromosome X, complete sequence Length = 221255 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 agagccccaaaggcccaagc 205 |||||||||||||||||||| Sbjct: 134084 agagccccaaaggcccaagc 134103
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 catggacgccatcgccaagg 350 |||||||||||||||||||| Sbjct: 4628177 catggacgccatcgccaagg 4628196
>gb|AC154040.7| Mus musculus 10 BAC RP23-348E15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 210862 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 tggcagcacagcggtggcag 110 |||||||||||||||||||| Sbjct: 8400 tggcagcacagcggtggcag 8419
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 gacgccatcgccaaggccaa 354 |||||||||||||||||||| Sbjct: 1186651 gacgccatcgccaaggccaa 1186632
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 cgccatcgccaaggccaacc 356 |||||||||||||||||||| Sbjct: 4682836 cgccatcgccaaggccaacc 4682855
>ref|NM_001038635.1| Mus musculus serine/threonine kinase 35 (Stk35), transcript variant 2, mRNA Length = 5401 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 ggtggtgaaggcggagaagc 377 |||||||||||||||||||| Sbjct: 4082 ggtggtgaaggcggagaagc 4101
>ref|NM_183262.2| Mus musculus serine/threonine kinase 35 (Stk35), transcript variant 1, mRNA Length = 6151 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 ggtggtgaaggcggagaagc 377 |||||||||||||||||||| Sbjct: 4832 ggtggtgaaggcggagaagc 4851
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 gacgccatcgccaaggccaa 354 |||||||||||||||||||| Sbjct: 1420923 gacgccatcgccaaggccaa 1420942
>emb|AL808137.4| Mouse DNA sequence from clone RP23-358G23 on chromosome 2, complete sequence Length = 199593 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 ggtggtgaaggcggagaagc 377 |||||||||||||||||||| Sbjct: 185934 ggtggtgaaggcggagaagc 185953
>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome Length = 3184243 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 agcaccttgctgctggcagc 97 |||||||||||||||||||| Sbjct: 2924369 agcaccttgctgctggcagc 2924388 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,033,337 Number of Sequences: 3902068 Number of extensions: 4033337 Number of successful extensions: 82622 Number of sequences better than 10.0: 82 Number of HSP's better than 10.0 without gapping: 81 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 81771 Number of HSP's gapped (non-prelim): 839 length of query: 583 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 560 effective length of database: 17,143,297,704 effective search space: 9600246714240 effective search space used: 9600246714240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)