ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd12n12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_862543.1| PREDICTED: Canis familiaris similar to calponin... 48 0.026
2gb|AC155099.1| Medicago truncatula chromosome 7 BAC clone mth2-1... 44 0.41
3gb|AC146720.23| Medicago truncatula clone mth2-17n5, complete se... 44 0.41
4gb|AC124955.34| Medicago truncatula clone mth2-12l24, complete s... 44 0.41
5gb|AC140915.6| Medicago truncatula clone mth2-10l24, complete se... 44 0.41
6gb|AC147405.7| Medicago truncatula clone mth2-146n5, complete se... 44 0.41
7gb|AC130810.14| Medicago truncatula clone mth2-36b14, complete s... 44 0.41
8emb|CT025156.14| M.truncatula DNA sequence from clone MTH2-117A9... 44 0.41
9gb|AC162385.4| Mus musculus 10 BAC RP24-397D18 (Roswell Park Can... 42 1.6
10dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
11gb|AC156392.5| Mus musculus 10 BAC RP24-320E8 (Roswell Park Canc... 42 1.6
12emb|AJ323595.1|HSA323595 Homo sapiens genomic sequence surroundi... 42 1.6
13dbj|AP005160.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
14dbj|AP003805.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
15gb|AC137613.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
16gb|AC009393.5| Drosophila melanogaster clone BACR17F05, complete... 40 6.4
17gb|AC123837.5| Mus musculus BAC clone RP23-385F8 from chromosome... 40 6.4
18gb|AC101542.19| Mus musculus chromosome 19, clone RP23-456B17, c... 40 6.4
19ref|XM_382969.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 40 6.4
20gb|AC007364.3| Homo sapiens BAC clone RP11-329H24 from 2, comple... 40 6.4
21gb|AC122873.5| Mus musculus BAC clone RP23-110K10 from 8, comple... 40 6.4
22ref|XM_950087.1| Theileria annulata strain Ankara hypothetical p... 40 6.4
23emb|AL138759.20| Human DNA sequence from clone RP11-119K6 on chr... 40 6.4
24gb|AC090797.5| Homo sapiens chromosome 8, clone RP11-586K2, comp... 40 6.4
25gb|AC016773.8| Homo sapiens BAC clone RP11-572O17 from 4, comple... 40 6.4
26gb|AC090980.5| Homo sapiens chromosome 8, clone RP11-433O22, com... 40 6.4
27gb|AC151986.4| Mus musculus BAC clone RP23-365E22 from chromosom... 40 6.4
28gb|AC158979.2| Mus musculus BAC clone RP23-218C24 from chromosom... 40 6.4
29gb|AC069114.4|AC069114 Homo sapiens chromosome 18, clone RP11-73... 40 6.4
30gb|AC027458.4|AC027458 Homo sapiens chromosome 18, clone RP11-72... 40 6.4
31gb|AF332862.1|AF332859S2 Mus musculus diadenosine triphosphate h... 40 6.4
32emb|BX323035.8| Zebrafish DNA sequence from clone DKEYP-94H10 in... 40 6.4
33gb|AF307337.1|AF307337 Homo sapiens ALPP, ALPPL2, ALPI, XCE, CHR... 40 6.4
34dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
35gb|AC092165.4| Homo sapiens BAC clone RP11-753F4 from 2, complet... 40 6.4
36gb|DQ003082.1| Homo sapiens matrix metalloproteinase 16 (membran... 40 6.4
37ref|XM_218947.3| PREDICTED: Rattus norvegicus glycoprotein A rep... 40 6.4
38emb|BX005264.10| Zebrafish DNA sequence from clone DKEY-63D22 in... 40 6.4
39gb|AE003697.4| Drosophila melanogaster chromosome 3R, section 35... 40 6.4
40gb|AC108825.15| Mus musculus chromosome 19, clone RP23-103N22, c... 40 6.4
41gb|AC127258.4| Mus musculus BAC clone RP24-302G16 from 8, comple... 40 6.4 
>ref|XM_862543.1| PREDICTED: Canis familiaris similar to calponin 1, basic, smooth
           muscle, transcript variant 2 (LOC484937), mRNA
          Length = 1205

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 28  gcttctggagcctgagaggggaag 51
           ||||||||||||||||||||||||
Sbjct: 171 gcttctggagcctgagaggggaag 194
to top
>gb|AC155099.1| Medicago truncatula chromosome 7 BAC clone mth2-144f20, complete
             sequence
          Length = 132371

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 438   gatactctgctgatacatatcgggaa 463
             |||||||| |||||||||||||||||
Sbjct: 31234 gatactcttctgatacatatcgggaa 31209
to top
>gb|AC146720.23| Medicago truncatula clone mth2-17n5, complete sequence
          Length = 126477

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 438    gatactctgctgatacatatcgggaa 463
              |||||||| |||||||||||||||||
Sbjct: 117934 gatactctcctgatacatatcgggaa 117909
to top
>gb|AC124955.34| Medicago truncatula clone mth2-12l24, complete sequence
          Length = 115804

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 438   gatactctgctgatacatatcgggaa 463
             |||||||| |||||||||||||||||
Sbjct: 26810 gatactcttctgatacatatcgggaa 26835
to top
>gb|AC140915.6| Medicago truncatula clone mth2-10l24, complete sequence
          Length = 120364

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 438  gatactctgctgatacatatcgggaa 463
            |||||||| |||||||||||||||||
Sbjct: 1088 gatactctcctgatacatatcgggaa 1063
to top
>gb|AC147405.7| Medicago truncatula clone mth2-146n5, complete sequence
          Length = 147062

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 438    gatactctgctgatacatatcgggaa 463
              |||||||| |||||||||||||||||
Sbjct: 120253 gatactcttctgatacatatcgggaa 120228
to top
>gb|AC130810.14| Medicago truncatula clone mth2-36b14, complete sequence
          Length = 117901

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 438   gatactctgctgatacatatcgggaa 463
             |||||||| |||||||||||||||||
Sbjct: 45859 gatactcttctgatacatatcgggaa 45834
to top
>emb|CT025156.14| M.truncatula DNA sequence from clone MTH2-117A9 on chromosome 3,
             complete sequence
          Length = 113846

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 438   gatactctgctgatacatatcgggaa 463
             |||||||| |||||||||||||||||
Sbjct: 28400 gatactctcctgatacatatcgggaa 28425
to top
>gb|AC162385.4| Mus musculus 10 BAC RP24-397D18 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 202541

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 403    ctaaattaanataatttattattg 426
              ||||||||| ||||||||||||||
Sbjct: 142801 ctaaattaaaataatttattattg 142778
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 204     accgccgtcttgtcgcctgtt 224
               |||||||||||||||||||||
Sbjct: 6499956 accgccgtcttgtcgcctgtt 6499976
to top
>gb|AC156392.5| Mus musculus 10 BAC RP24-320E8 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 188305

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 403    ctaaattaanataatttattattg 426
              ||||||||| ||||||||||||||
Sbjct: 114789 ctaaattaaaataatttattattg 114812
to top
>emb|AJ323595.1|HSA323595 Homo sapiens genomic sequence surrounding NotI site, clone NB6-811R
          Length = 818

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 25  tctgcttctggagcctgagag 45
           |||||||||||||||||||||
Sbjct: 387 tctgcttctggagcctgagag 367
to top
>dbj|AP005160.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0031C24
          Length = 194111

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 204   accgccgtcttgtcgcctgtt 224
             |||||||||||||||||||||
Sbjct: 12050 accgccgtcttgtcgcctgtt 12070
to top
>dbj|AP003805.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1080_F08
          Length = 94139

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 204   accgccgtcttgtcgcctgtt 224
             |||||||||||||||||||||
Sbjct: 57045 accgccgtcttgtcgcctgtt 57065
to top
>gb|AC137613.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0034K10, complete sequence
          Length = 138925

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 350   gctgggctgggccgggccgt 369
             ||||||||||||||||||||
Sbjct: 42694 gctgggctgggccgggccgt 42675
to top
>gb|AC009393.5| Drosophila melanogaster clone BACR17F05, complete sequence
          Length = 198037

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 413   ataatttattattgccatac 432
             ||||||||||||||||||||
Sbjct: 57098 ataatttattattgccatac 57117
to top
>gb|AC123837.5| Mus musculus BAC clone RP23-385F8 from chromosome 7, complete sequence
          Length = 208880

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 36     agcctgagaggggaagaggcgagg 59
              |||||||||||||||||| |||||
Sbjct: 111364 agcctgagaggggaagagccgagg 111387
to top
>gb|AC101542.19| Mus musculus chromosome 19, clone RP23-456B17, complete sequence
          Length = 165781

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 398   tttatctaaattaanataattta 420
             |||||||||||||| ||||||||
Sbjct: 69958 tttatctaaattaaaataattta 69980
to top
>ref|XM_382969.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG02793.1)
            partial mRNA
          Length = 3420

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 95   cctgctgttggagcctgaga 114
            ||||||||||||||||||||
Sbjct: 1658 cctgctgttggagcctgaga 1639
to top
>gb|AC007364.3| Homo sapiens BAC clone RP11-329H24 from 2, complete sequence
          Length = 200908

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 396   aatttatctaaattaanataatttatt 422
             |||||||||||||||| || |||||||
Sbjct: 26390 aatttatctaaattaaaattatttatt 26364
to top
>gb|AC122873.5| Mus musculus BAC clone RP23-110K10 from 8, complete sequence
          Length = 199474

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    aggggaagaggcgaggagcc 63
             ||||||||||||||||||||
Sbjct: 58666 aggggaagaggcgaggagcc 58685
to top
>ref|XM_950087.1| Theileria annulata strain Ankara hypothetical protein (TA04810)
           partial mRNA
          Length = 1134

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 399 ttatctaaattaanataatttattatt 425
           |||| |||||||| |||||||||||||
Sbjct: 74  ttatataaattaaaataatttattatt 48
to top
>emb|AL138759.20| Human DNA sequence from clone RP11-119K6 on chromosome 10 Contains the
              the 3' end of a novel gene (KIAA0608), the HELLS gene for
              helicase, lymphoid-specific (LSH, PASG, SMARCA6, FLJ10339),
              two novel genes, a C-terminal binding protein 2 (CTBP2)
              pseudogene and a CpG island, complete sequence
          Length = 193020

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     atctgcttctggagcctgag 43
              ||||||||||||||||||||
Sbjct: 145404 atctgcttctggagcctgag 145385
to top
>gb|AC090797.5| Homo sapiens chromosome 8, clone RP11-586K2, complete sequence
          Length = 193929

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 418   ttattattgccatactcatt 437
             ||||||||||||||||||||
Sbjct: 97110 ttattattgccatactcatt 97091
to top
>gb|AC016773.8| Homo sapiens BAC clone RP11-572O17 from 4, complete sequence
          Length = 189223

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 350    gctgggctgggccgggccgt 369
              ||||||||||||||||||||
Sbjct: 166003 gctgggctgggccgggccgt 166022
to top
>gb|AC090980.5| Homo sapiens chromosome 8, clone RP11-433O22, complete sequence
          Length = 182881

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 418    ttattattgccatactcatt 437
              ||||||||||||||||||||
Sbjct: 161097 ttattattgccatactcatt 161078
to top
>gb|AC151986.4| Mus musculus BAC clone RP23-365E22 from chromosome 7, complete sequence
          Length = 199337

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 36    agcctgagaggggaagaggcgagg 59
             |||||||||||||||||| |||||
Sbjct: 26727 agcctgagaggggaagagccgagg 26704
to top
>gb|AC158979.2| Mus musculus BAC clone RP23-218C24 from chromosome 14, complete sequence
          Length = 216848

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 248    gccaagagtaggtncagcagggaggaa 274
              ||||||||||||| | |||||||||||
Sbjct: 138225 gccaagagtaggtgcggcagggaggaa 138251
to top
>gb|AC069114.4|AC069114 Homo sapiens chromosome 18, clone RP11-736G13, complete sequence
          Length = 149144

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 400   tatctaaattaanataatttatt 422
             |||||||||||| ||||||||||
Sbjct: 27877 tatctaaattaacataatttatt 27855
to top
>gb|AC027458.4|AC027458 Homo sapiens chromosome 18, clone RP11-723G8, complete sequence
          Length = 182495

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 400   tatctaaattaanataatttatt 422
             |||||||||||| ||||||||||
Sbjct: 59746 tatctaaattaacataatttatt 59768
to top
>gb|AF332862.1|AF332859S2 Mus musculus diadenosine triphosphate hydrolase (Fhit) gene, intron 5,
             partial sequence
          Length = 166617

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 248   gccaagagtaggtncagcagggaggaa 274
             ||||||||||||| | |||||||||||
Sbjct: 37874 gccaagagtaggtgcggcagggaggaa 37900
to top
>emb|BX323035.8| Zebrafish DNA sequence from clone DKEYP-94H10 in linkage group 2,
             complete sequence
          Length = 147640

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 399   ttatctaaattaanataatttattatt 425
             |||| |||||||| |||||||||||||
Sbjct: 30072 ttatttaaattaatataatttattatt 30098
to top
>gb|AF307337.1|AF307337 Homo sapiens ALPP, ALPPL2, ALPI, XCE, CHRND, and CHRNG genes, complete
              sequence
          Length = 210301

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 41     gagaggggaagaggcgagga 60
              ||||||||||||||||||||
Sbjct: 161061 gagaggggaagaggcgagga 161080
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 350      gctgggctgggccgggccgt 369
                ||||||||||||||||||||
Sbjct: 10571072 gctgggctgggccgggccgt 10571053
to top
>gb|AC092165.4| Homo sapiens BAC clone RP11-753F4 from 2, complete sequence
          Length = 100020

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    gagaggggaagaggcgagga 60
             ||||||||||||||||||||
Sbjct: 29202 gagaggggaagaggcgagga 29221
to top
>gb|DQ003082.1| Homo sapiens matrix metalloproteinase 16 (membrane-inserted) (MMP16)
             gene, complete cds
          Length = 290137

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 418   ttattattgccatactcatt 437
             ||||||||||||||||||||
Sbjct: 31131 ttattattgccatactcatt 31150
to top
>ref|XM_218947.3| PREDICTED: Rattus norvegicus glycoprotein A repetitions predominant
            (predicted) (Garp_predicted), mRNA
          Length = 2853

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 61   gcccaccaccggcttgccgcgggc 84
            |||||| |||||||||||||||||
Sbjct: 1177 gcccacaaccggcttgccgcgggc 1200
to top
>emb|BX005264.10| Zebrafish DNA sequence from clone DKEY-63D22 in linkage group 2, complete
              sequence
          Length = 212605

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 399    ttatctaaattaanataatttattatt 425
              |||| |||||||| |||||||||||||
Sbjct: 175996 ttatttaaattaatataatttattatt 176022
to top
>gb|AE003697.4| Drosophila melanogaster chromosome 3R, section 35 of 118 of the complete
              sequence
          Length = 221239

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 413    ataatttattattgccatac 432
              ||||||||||||||||||||
Sbjct: 198391 ataatttattattgccatac 198410
to top
>gb|AC108825.15| Mus musculus chromosome 19, clone RP23-103N22, complete sequence
          Length = 202768

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 398   tttatctaaattaanataattta 420
             |||||||||||||| ||||||||
Sbjct: 97696 tttatctaaattaaaataattta 97674
to top
>gb|AC127258.4| Mus musculus BAC clone RP24-302G16 from 8, complete sequence
          Length = 163028

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    aggggaagaggcgaggagcc 63
             ||||||||||||||||||||
Sbjct: 33823 aggggaagaggcgaggagcc 33804


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,175,426
Number of Sequences: 3902068
Number of extensions: 3175426
Number of successful extensions: 62399
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62285
Number of HSP's gapped (non-prelim): 114
length of query: 475
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 453
effective length of database: 17,147,199,772
effective search space: 7767681496716
effective search space used: 7767681496716
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top