>QCRC_MYCTU (P63887) Ubiquinol-cytochrome c reductase cytochrome c subunit|
          Length = 280

 Score = 32.7 bits (73), Expect = 0.82
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +2

Query: 11  GQRAAVFKXNPRVAMAPPPTEEQLRRGSEETEALILSVHGGSHAGVCTDQPSALG 175
           G  AAV    P+VA+A   +   LR G +  +   +S HG +  GV    PS +G
Sbjct: 39  GGLAAVLTPTPQVAVADESSSALLRTGKQLFDTSCVSCHGANLQGVPDHGPSLIG 93

>QCRC_MYCBO (P63888) Ubiquinol-cytochrome c reductase cytochrome c subunit|
          Length = 280

 Score = 32.7 bits (73), Expect = 0.82
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +2

Query: 11  GQRAAVFKXNPRVAMAPPPTEEQLRRGSEETEALILSVHGGSHAGVCTDQPSALG 175
           G  AAV    P+VA+A   +   LR G +  +   +S HG +  GV    PS +G
Sbjct: 39  GGLAAVLTPTPQVAVADESSSALLRTGKQLFDTSCVSCHGANLQGVPDHGPSLIG 93

>QCRC_MYCLE (O69583) Ubiquinol-cytochrome c reductase cytochrome c subunit|
          Length = 289

 Score = 32.7 bits (73), Expect = 0.82
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +2

Query: 11  GQRAAVFKXNPRVAMAPPPTEEQLRRGSEETEALILSVHGGSHAGVCTDQPSALG 175
           G  AAV    P+VA+A   +   LR G +  +   +S HG +  GV    PS +G
Sbjct: 48  GGLAAVLTPTPQVAVADEDSSALLRTGKQLFDTSCVSCHGANLQGVPDHGPSLIG 102

>SDS3_MOUSE (Q8BR65) Sin3 histone deacetylase corepressor complex component|
           SDS3 (Suppressor of defective silencing 3 protein
           homolog)
          Length = 328

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +2

Query: 134 SHAGVCTDQPSALGAPATQNTEPRDDQALVSTESDQISLRAPELVNTQVDSDDQRDAQV 310
           S AG+    P+   APA     P D++ L S E D+ S R  E   +  D++D  +  +
Sbjct: 2   SAAGLLAPAPAPAAAPAAPEYYPEDEEELESAEDDERSCRGRE---SDEDTEDASETDL 57

>DEND_MOUSE (Q80TS7) Dendrin|
          Length = 656

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 20/44 (45%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
 Frame = +2

Query: 92  SEETEALILSVHGGSHAGVCTDQPSA-----LGAPATQNTEPRD 208
           S+  EA  LSVH GS  G  TD P A        PA  NT PR+
Sbjct: 572 SDSDEAEDLSVHSGSSDGSDTDAPGASWRNERTLPALGNTRPRE 615

>LBD4_ARATH (Q9SHE9) LOB domain protein 4|
          Length = 172

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +2

Query: 143 GVCTDQPSALGAPATQNTEPRDDQALVS 226
           G+C D PS+ G+P+++   P+D++ + S
Sbjct: 128 GLCPDSPSSSGSPSSKQVSPQDNKGMFS 155

>T7L1B_XENLA (Q90ZB6) Transcription factor 7-like 1-B (HMG box transcription|
           factor 3-B) (TCF-3-B) (xTcf-3)
          Length = 551

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 24  PSSRXTLAWRWPLLQRKSSSGV-DQRKPRPS 113
           PS+R  L  +WPLL   S++G+ D R P P+
Sbjct: 121 PSARAYLQMKWPLLDSPSTAGLKDARSPSPA 151

>T7L1C_XENLA (P70063) Transcription factor 7-like 1-C (HMG box transcription|
           factor 3-C) (TCF-3-C) (xTcf-3c)
          Length = 550

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 24  PSSRXTLAWRWPLLQRKSSSGV-DQRKPRPS 113
           P+SR  L  +WPLL   S++G+ D R P P+
Sbjct: 120 PASRAYLQMKWPLLDSPSTAGLKDARSPSPA 150

>TF7L1_XENTR (Q6GL68) Transcription factor 7-like 1 (HMG box transcription|
           factor 3) (TCF-3)
          Length = 553

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 24  PSSRXTLAWRWPLLQRKSSSGV-DQRKPRPS 113
           PS+R  L  +WPLL   S++G+ D R P P+
Sbjct: 121 PSARTYLQMKWPLLDSPSTAGLKDARSPSPA 151

>T7L1A_XENLA (P70062) Transcription factor 7-like 1-A (HMG box transcription|
           factor 3-A) (TCF-3-A) (xTcf-3)
          Length = 554

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 24  PSSRXTLAWRWPLLQRKSSSGV-DQRKPRPS 113
           PS+R  L  +WPLL   S++G+ D R P P+
Sbjct: 121 PSARTYLQMKWPLLDSPSTAGLKDARSPSPA 151

>JDP_MANSE (Q9U6V6) J domain-containing protein|
          Length = 170

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 13  TKGRRLQGKPSRGDGPSSNGRAAPAWIRGNRG 108
           TK R L+G+P +  GPSS G + P   R + G
Sbjct: 111 TKDRMLEGEPGKPSGPSSLGPSNPGARRASEG 142

>DEND_RAT (P50617) Dendrin|
          Length = 653

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
 Frame = +2

Query: 92  SEETEALILSVHGGSHAGVCTDQPSA-----LGAPATQNTEPRD 208
           S+  EA  LS H GS  G  TD P A        PA  NT PR+
Sbjct: 571 SDSDEAEDLSAHSGSSDGSDTDAPGASWRNERTLPAVGNTRPRE 614

>KIF4A_HUMAN (O95239) Chromosome-associated kinesin KIF4A (Chromokinesin)|
          Length = 1232

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 17  RAAVFKXNPRVAMAPPPTE-EQLRRGSEETEALILSVHGGSHAGVCTDQPS 166
           RA   K  P V + P   E   L++  ++ + L+L  HGG+  G  T +PS
Sbjct: 332 RARKIKNKPIVNIDPQTAELNHLKQQVQQLQVLLLQAHGGTLPGSITVEPS 382

>JDP_BOMMO (Q9U6V7) J domain-containing protein|
          Length = 170

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +1

Query: 13  TKGRRLQGKPSRGDGPSSNGRAAPAWIRGNRG 108
           TK R L+G  S+  GPSS G + PA  R + G
Sbjct: 111 TKDRMLEGDGSKPSGPSSLGPSNPATRRASEG 142

>EMID1_MOUSE (Q91VF5) EMI domain-containing protein 1 precursor (Protein Emu1)|
           (Emilin and multimerin domain-containing protein 1)
          Length = 444

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 37  KPSRGDGPSSNGRAAPAWIRGNRGPHP 117
           +P  G G   +G   P+ +RG RG HP
Sbjct: 403 EPDLGSGAGPDGTGTPSLLRGKRGGHP 429

>IF2_CHRVO (Q7NY13) Translation initiation factor IF-2|
          Length = 964

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = +1

Query: 4   GTRTKGRRLQGKPSRGDGPSSNGRAAPAWIRGNRGPHPFCSRRQPR 141
           G   +G R  G   RG  P  + R       G+RGP P    R PR
Sbjct: 247 GNDNRGPRPAGAGDRGPRPGGDNRGPRPAGAGDRGPRPGGDNRGPR 292

>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)|
           (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon)
           (Somatostatin receptor-interacting protein)
           (SSTR-interacting protein) (SSTRIP)
          Length = 2167

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
 Frame = +1

Query: 13  TKGRRLQGKPSRGDGPSSNGR----AAPAWIRG---NRGPHPFCSRRQPRGRLHGSTVSP 171
           T G + Q +PS      S+G     ++P   R    +RG HP  ++RQPRGR   S    
Sbjct: 465 TSGPQGQSQPSAPSTKLSSGTLRSASSPRGARARSPSRGRHPEDAKRQPRGRPSSSGT-- 522

Query: 172 RRPRD-PEYGT 201
             PRD P  GT
Sbjct: 523 --PRDGPAGGT 531

>LRTM2_HUMAN (O43300) Leucine-rich repeat transmembrane neuronal protein 2|
           precursor (Leucine-rich repeat neuronal 2 protein)
          Length = 516

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 293 GRRCPPVCSRAQERARKSDLILWRRAPGHHGVPYSGSRGRLGLTV 159
           G  CPP C       R   L+ +  + G H VP +  +G LGL++
Sbjct: 31  GMACPPKC-------RCEKLLFYCDSQGFHSVPNATDKGSLGLSL 68

>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:|
            Chondrocalcin]
          Length = 1419

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
 Frame = +1

Query: 7    TRTKGRR-LQGKPSRGDGPSSNGRAAPAWIRGN---RGPHPFCSRRQPRGRLHGSTVSPR 174
            T  KG R  QG P     P + GR  P    GN    GP     +  P+G   G T +P 
Sbjct: 813  TGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPAGPPGPAGKDGPKG-ARGDTGAPG 871

Query: 175  RPRDP 189
            R  DP
Sbjct: 872  RAGDP 876

>C1332_XYLFT (Q87AV9) Putative cytochrome P450 133B2 (EC 1.14.-.-)|
          Length = 399

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = -3

Query: 511 ICFFLGVDFSWAICLVVLVNNLGIVFNPS 425
           IC  + VD S AI L V V+NL  VF+P+
Sbjct: 145 ICRMMDVDISDAISLSVAVSNLAKVFDPA 173

>LRTM2_MOUSE (Q8BGA3) Leucine-rich repeat transmembrane neuronal protein 2|
           precursor
          Length = 515

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 293 GRRCPPVCSRAQERARKSDLILWRRAPGHHGVPYSGSRGRLGLTV 159
           G  CPP C       R   L+ +  + G H VP +  +G LGL++
Sbjct: 31  GMACPPKC-------RCEKLLFYCDSQGFHSVPNATDKGSLGLSL 68

>ACM4_HUMAN (P08173) Muscarinic acetylcholine receptor M4|
          Length = 479

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = +2

Query: 59  PPPTE---EQLRRGS-EETEALILSVHGGSHAGVCTDQPSALGAPATQNTEPRDDQALVS 226
           PPP E   E+LR G  EE     L       A   T   S+ G+ ATQNT+ R    L +
Sbjct: 257 PPPGEAAREELRNGKLEEAPPPALPPPPRPVADKDTSNESSSGS-ATQNTKERPATELST 315

Query: 227 TESDQISLRAPEL 265
           TE+   ++ AP L
Sbjct: 316 TEATTPAMPAPPL 328


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,445,791
Number of Sequences: 219361
Number of extensions: 1446737
Number of successful extensions: 4496
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 4159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4485
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5253413348
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)