ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd13c05 |
|---|---|
| Clone Library Name | barley_pub |
>VPS36_HUMAN (Q86VN1) Vacuolar protein sorting protein 36 (ELL-associated| protein of 45 kDa) Length = 386 Score = 37.0 bits (84), Expect = 0.049 Identities = 26/105 (24%), Positives = 46/105 (43%) Frame = +3 Query: 324 RNEHNHPLCPNLSLARFFLSQKHMSSEEKSFLKVLQQSKIPPNKILRIFRRMRSSFGNIS 503 R++ NH C + L++ ++ + KS V+ PPNK F+ ++S+ +S Sbjct: 50 RDQKNHECCMAILLSQIVFIEEQAAGIGKSAKIVVHLHPAPPNKEPGPFQSSKNSYIKLS 109 Query: 504 FKKQDPVSSVRSSSENIPSKKKDPISLQCTEQRKTENSDVESTLK 638 FK+ + R SE + QR+ EN V +L+ Sbjct: 110 FKEHGQIEFYRRLSEEM-------------TQRRWENMPVSQSLQ 141
>VPS36_RAT (P0C0A2) Vacuolar protein sorting protein 36 (ELL-associated| protein of 45 kDa) Length = 386 Score = 36.2 bits (82), Expect = 0.084 Identities = 21/94 (22%), Positives = 45/94 (47%) Frame = +3 Query: 324 RNEHNHPLCPNLSLARFFLSQKHMSSEEKSFLKVLQQSKIPPNKILRIFRRMRSSFGNIS 503 R++ N+ C + L++ ++ + KS V+ PPNK F+ ++S+ +S Sbjct: 50 RDQKNNECCMAIPLSQIVFIEEQAAGIGKSAKIVVHLHPAPPNKEPGPFQSSKNSYIKLS 109 Query: 504 FKKQDPVSSVRSSSENIPSKKKDPISLQCTEQRK 605 FK+ + R SE + ++ + + + + Q K Sbjct: 110 FKEHGQIEFYRRLSEEMTQRRWETVPVSQSLQTK 143
>VPS36_XENLA (Q6DDF4) Vacuolar protein sorting protein 36| Length = 388 Score = 32.0 bits (71), Expect = 1.6 Identities = 18/86 (20%), Positives = 39/86 (45%) Frame = +3 Query: 324 RNEHNHPLCPNLSLARFFLSQKHMSSEEKSFLKVLQQSKIPPNKILRIFRRMRSSFGNIS 503 R++ NH C L++ +++ KS V+ PNK ++ R S+ +S Sbjct: 50 RDQKNHDFCIAFPLSQIVFTEEQAGGIGKSAKIVVHLHPATPNKEPGPYQTSRYSYVKLS 109 Query: 504 FKKQDPVSSVRSSSENIPSKKKDPIS 581 F++ + R +E + ++ + +S Sbjct: 110 FREHGQIEFQRRLAEELTQRRWERLS 135
>DICER_ARATH (Q9SP32) Endoribonuclease Dicer homolog (EC 3.1.26.-) (CARPEL| FACTORY protein) (SHORT INTEGUMENTS 1 protein) (SUSPENSOR1 protein) Length = 1909 Score = 32.0 bits (71), Expect = 1.6 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = +3 Query: 192 KKTRTWNEISNPNRKRKINSFERTNCQAKVIVKLTKGQWE 311 K+TR W+E N +KR+ N++ R +V +G WE Sbjct: 158 KRTRNWDEAGNNKKKRECNNYRRDGRDREV-----RGYWE 192
>VPS36_BRARE (Q7ZVK4) Vacuolar protein sorting protein 36| Length = 382 Score = 31.6 bits (70), Expect = 2.1 Identities = 18/81 (22%), Positives = 37/81 (45%) Frame = +3 Query: 324 RNEHNHPLCPNLSLARFFLSQKHMSSEEKSFLKVLQQSKIPPNKILRIFRRMRSSFGNIS 503 R++ NH C + L++ ++ + KS V+ P NK ++ + S+ +S Sbjct: 50 RDQKNHECCICIPLSQVIFFEEQAAGIGKSAKIVIHLHPAPENKEPGPYQHSKYSYIKLS 109 Query: 504 FKKQDPVSSVRSSSENIPSKK 566 FK+ + R +E + K+ Sbjct: 110 FKEHGQIEFYRRLTEEMTQKR 130
>VPS36_MOUSE (Q91XD6) Vacuolar protein sorting protein 36| Length = 386 Score = 31.6 bits (70), Expect = 2.1 Identities = 18/85 (21%), Positives = 40/85 (47%) Frame = +3 Query: 324 RNEHNHPLCPNLSLARFFLSQKHMSSEEKSFLKVLQQSKIPPNKILRIFRRMRSSFGNIS 503 R++ N+ C + L++ ++ + KS V+ P NK F+ ++S+ +S Sbjct: 50 RDQKNNECCMAIPLSQIVFIEEQAAGIGKSAKIVVHLHPAPSNKEPGPFQSSKNSYIRLS 109 Query: 504 FKKQDPVSSVRSSSENIPSKKKDPI 578 FK+ + R SE + ++ + + Sbjct: 110 FKEHGQIEFYRRLSEEMTQRRWETV 134
>BAF1_KLULA (P26375) Transcription factor BAF1 (ARS-binding factor 1) (Protein| ABF1) (Bidirectionally acting factor) Length = 494 Score = 31.6 bits (70), Expect = 2.1 Identities = 15/30 (50%), Positives = 18/30 (60%) Frame = +3 Query: 297 KGQWEFATVRNEHNHPLCPNLSLARFFLSQ 386 KG + + HNHPL NLSL RF LS+ Sbjct: 152 KGPFVVTKIEPYHNHPLESNLSLQRFVLSK 181
>UBF1B_XENLA (P25980) Nucleolar transcription factor 1-B (Upstream binding| factor 1-B) (UBF-1-B) (xUBF-2) Length = 701 Score = 31.2 bits (69), Expect = 2.7 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 2/91 (2%) Frame = +3 Query: 339 HPLCPNLSLARFFLSQKHMSSEEKSFLKVLQQSKIPPNKILRIFRRMRSSFGN--ISFKK 512 HP NL L + LS+K+ EK +K +Q F+R + F F++ Sbjct: 134 HPEMSNLDLTKI-LSKKYKELPEKKKMKYIQD-----------FQREKQDFERNMAKFRE 181 Query: 513 QDPVSSVRSSSENIPSKKKDPISLQCTEQRK 605 + P ++P K K P L +RK Sbjct: 182 EHPDLMQNPKKSDVPEKPKTPQQLWYNHERK 212
>HS105_MOUSE (Q61699) Heat-shock protein 105 kDa (Heat shock-related 100 kDa| protein E7I) (HSP-E7I) (Heat shock 110 kDa protein) (42 degrees C-HSP) Length = 858 Score = 31.2 bits (69), Expect = 2.7 Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 5/127 (3%) Frame = +3 Query: 273 AKVIVKLTKGQWEFATVRNEHNHPLCPNLSLARFFLSQKHMSSE-EKSFLKVLQQSKIPP 449 +KV+ L +G +E ++ P + RF + + EKS +KV + ++ Sbjct: 429 SKVLTFLRRGPFELEAFYSDPQGVPYPEAKIGRFVVQNVSAQKDGEKSRVKV--KVRVNT 486 Query: 450 NKILRIFRRMRSSFGNISFKKQDPVSSVRSSSENIPSKKKDPISLQ----CTEQRKTENS 617 + I I S S E +P++++D SL+ C QR TE+S Sbjct: 487 HGIFTI--------------------STASMVEKVPTEEEDGSSLEADMECPNQRPTESS 526 Query: 618 DVESTLK 638 DV+ ++ Sbjct: 527 DVDKNIQ 533
>BAF1_KLUMA (P33293) Transcription factor BAF1 (ARS-binding factor 1) (Protein| ABF1) (Bidirectionally acting factor) Length = 496 Score = 30.8 bits (68), Expect = 3.5 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +3 Query: 297 KGQWEFATVRNEHNHPLCPNLSLARFFLSQ 386 KG + + HNHPL NLSL RF L++ Sbjct: 164 KGPFAVTKIEPYHNHPLESNLSLQRFVLTK 193
>CTPAL_STAAN (Q7A5M9) Probable ctpA-like serine protease (EC 3.4.21.-)| Length = 496 Score = 30.4 bits (67), Expect = 4.6 Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 1/138 (0%) Frame = +3 Query: 213 EISNPNRKRKINSFERTNCQAKVIVKLTKGQWEFATVRNEHNHPLCPNLSLARFFLSQKH 392 EI+ N+ ++ NS +R + + +W+F ++ +A F++QK Sbjct: 16 EIATSNQDQETNSSKRVHLK----------RWQFISILIGTTLITAVITVVAYIFINQKI 65 Query: 393 MSSEEKSFLKVLQQSKIPPNKILRIFRRMRSSFGNISFKKQDPVSSVRSSSENIPSKKKD 572 S L Q+ + NKI +++ + S + +KKQD +++ + + + KD Sbjct: 66 ------SGLNKTDQANL--NKIENVYKILNSDY----YKKQDSDKLSKAAIDGMVKELKD 113 Query: 573 PISLQCT-EQRKTENSDV 623 P S T EQ K+ N V Sbjct: 114 PYSEYLTKEQTKSFNEGV 131
>CTPAL_STAAM (Q99U67) Probable ctpA-like serine protease (EC 3.4.21.-)| Length = 496 Score = 30.4 bits (67), Expect = 4.6 Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 1/138 (0%) Frame = +3 Query: 213 EISNPNRKRKINSFERTNCQAKVIVKLTKGQWEFATVRNEHNHPLCPNLSLARFFLSQKH 392 EI+ N+ ++ NS +R + + +W+F ++ +A F++QK Sbjct: 16 EIATSNQDQETNSSKRVHLK----------RWQFISILIGTTLITAVITVVAYIFINQKI 65 Query: 393 MSSEEKSFLKVLQQSKIPPNKILRIFRRMRSSFGNISFKKQDPVSSVRSSSENIPSKKKD 572 S L Q+ + NKI +++ + S + +KKQD +++ + + + KD Sbjct: 66 ------SGLNKTDQANL--NKIENVYKILNSDY----YKKQDSDKLSKAAIDGMVKELKD 113 Query: 573 PISLQCT-EQRKTENSDV 623 P S T EQ K+ N V Sbjct: 114 PYSEYLTKEQTKSFNEGV 131
>CTPAL_STAAC (Q5HG01) Probable ctpA-like serine protease (EC 3.4.21.-)| Length = 496 Score = 30.4 bits (67), Expect = 4.6 Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 1/138 (0%) Frame = +3 Query: 213 EISNPNRKRKINSFERTNCQAKVIVKLTKGQWEFATVRNEHNHPLCPNLSLARFFLSQKH 392 EI+ N+ ++ NS +R + + +W+F ++ +A F++QK Sbjct: 16 EIATSNQDQETNSSKRVHLK----------RWQFISILIGTILITAVITVVAYIFINQKI 65 Query: 393 MSSEEKSFLKVLQQSKIPPNKILRIFRRMRSSFGNISFKKQDPVSSVRSSSENIPSKKKD 572 S L QS + NKI +++ + S + +KKQD +++ + + + KD Sbjct: 66 ------SGLNKTDQSNL--NKIENVYKILNSDY----YKKQDSDKLSKAAIDGMVKELKD 113 Query: 573 PISLQCT-EQRKTENSDV 623 P S T EQ K+ N V Sbjct: 114 PYSEYLTKEQTKSFNEGV 131
>UBF1A_XENLA (P25979) Nucleolar transcription factor 1-A (Upstream binding| factor 1-A) (UBF-1-A) (xUBF-1) Length = 677 Score = 30.0 bits (66), Expect = 6.0 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 2/91 (2%) Frame = +3 Query: 339 HPLCPNLSLARFFLSQKHMSSEEKSFLKVLQQSKIPPNKILRIFRRMRSSFGN--ISFKK 512 HP NL L + LS+K+ EK +K +Q F+R + F F++ Sbjct: 134 HPEMSNLDLTKI-LSKKYKELPEKKKMKYIQD-----------FQREKLEFERNLARFRE 181 Query: 513 QDPVSSVRSSSENIPSKKKDPISLQCTEQRK 605 + P ++P K K P L +RK Sbjct: 182 EHPDLMQNPKKSDVPEKPKTPQQLWYNHERK 212
>YWDF_BACSU (P39614) Putative glycosyl transferase ywdF (EC 2.-.-.-)| Length = 268 Score = 29.6 bits (65), Expect = 7.9 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 9/60 (15%) Frame = -1 Query: 329 IPNSCELPLSLSE---LHYHLCL------AICPLKGIYFPLPVWV*NFIPGSGFLAASNS 177 IP CEL S+S + Y + + ++ P+K +Y LP+ V N SG +AA N+ Sbjct: 13 IPALCELLESISRQTLMPYEIIIVNDAGESVVPVKALYPELPIAVINLEKNSGHVAARNA 72 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,606,800 Number of Sequences: 219361 Number of extensions: 1486921 Number of successful extensions: 4068 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3958 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4067 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 5972710590 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
