ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd13b20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GPSN2_HUMAN (Q9NZ01) Synaptic glycoprotein SC2 134 3e-31
2GPSN2_RAT (Q64232) Synaptic glycoprotein SC2 132 1e-30
3GPSN2_MOUSE (Q9CY27) Synaptic glycoprotein SC2 132 1e-30
4CBIO2_HALSA (Q9HPH7) Putative cobalt import ATP-binding protein ... 31 3.5
5O51I1_HUMAN (Q9H343) Olfactory receptor 51I1 (Odorant receptor H... 30 7.7

>GPSN2_HUMAN (Q9NZ01) Synaptic glycoprotein SC2|
          Length = 308

 Score =  134 bits (336), Expect = 3e-31
 Identities = 71/167 (42%), Positives = 97/167 (58%), Gaps = 1/167 (0%)
 Frame = +1

Query: 133 AKVADLQEAIHAKTKKYYPARQRLTLPAQPGKSGKPVVLNQKASLSEYCEKGSGSLTVVF 312
           A +A+++        ++YPARQ L L  + GKS K   + QK  +         + T+ F
Sbjct: 27  ATIAEIKNLFTKTHPQWYPARQSLRLDPK-GKSLKDEDVLQKLPVGT-------TATLYF 78

Query: 313 KDLGPQVYYSTLFFWEYVGPLIIYPIFYYLPVYKY-FGYEGERVIHPVQTYAMYYFCFHY 489
           +DLG Q+ + T+F  EY GPL IY +FY+   + Y   Y+     H V   A     FHY
Sbjct: 79  RDLGAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYGHKYDFTSSRHTVVHLACICHSFHY 138

Query: 490 FKRIMETFFVHRFSHATSPVSNVFRNCAYYWTFGAYIAYYCNHPLYT 630
            KR++ET FVHRFSH T P+ N+F+NC YYW F A++AYY NHPLYT
Sbjct: 139 IKRLLETLFVHRFSHGTMPLRNIFKNCTYYWGFAAWMAYYINHPLYT 185



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>GPSN2_RAT (Q64232) Synaptic glycoprotein SC2|
          Length = 308

 Score =  132 bits (331), Expect = 1e-30
 Identities = 70/171 (40%), Positives = 99/171 (57%), Gaps = 1/171 (0%)
 Frame = +1

Query: 121 LKDSAKVADLQEAIHAKTKKYYPARQRLTLPAQPGKSGKPVVLNQKASLSEYCEKGSGSL 300
           ++  A +++++        ++YPARQ L L  + GKS K   + QK  +         + 
Sbjct: 23  VEPQATISEIKTLFTKTHPQWYPARQSLRLDPK-GKSLKDEDVLQKLPVGT-------TA 74

Query: 301 TVVFKDLGPQVYYSTLFFWEYVGPLIIYPIFYYLPVYKYFG-YEGERVIHPVQTYAMYYF 477
           T+ F+DLG Q+ + T+F  EY GPL IY +FY+   + Y   Y+     H V   A    
Sbjct: 75  TLYFRDLGAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYGRKYDFTSSRHTVVHLACMCH 134

Query: 478 CFHYFKRIMETFFVHRFSHATSPVSNVFRNCAYYWTFGAYIAYYCNHPLYT 630
            FHY KR++ET FVHRFSH T P+ N+F+NC YYW F A++AYY NHPLYT
Sbjct: 135 SFHYIKRLLETLFVHRFSHGTMPLRNIFKNCTYYWGFAAWMAYYINHPLYT 185



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>GPSN2_MOUSE (Q9CY27) Synaptic glycoprotein SC2|
          Length = 308

 Score =  132 bits (331), Expect = 1e-30
 Identities = 70/171 (40%), Positives = 99/171 (57%), Gaps = 1/171 (0%)
 Frame = +1

Query: 121 LKDSAKVADLQEAIHAKTKKYYPARQRLTLPAQPGKSGKPVVLNQKASLSEYCEKGSGSL 300
           ++  A +++++        ++YPARQ L L  + GKS K   + QK  +         + 
Sbjct: 23  VEPQATISEIKTLFTKTHPQWYPARQSLRLDPK-GKSLKDEDVLQKLPVGT-------TA 74

Query: 301 TVVFKDLGPQVYYSTLFFWEYVGPLIIYPIFYYLPVYKYFG-YEGERVIHPVQTYAMYYF 477
           T+ F+DLG Q+ + T+F  EY GPL IY +FY+   + Y   Y+     H V   A    
Sbjct: 75  TLYFRDLGAQISWVTVFLTEYAGPLFIYLLFYFRVPFIYGRKYDFTSSRHTVVHLACMCH 134

Query: 478 CFHYFKRIMETFFVHRFSHATSPVSNVFRNCAYYWTFGAYIAYYCNHPLYT 630
            FHY KR++ET FVHRFSH T P+ N+F+NC YYW F A++AYY NHPLYT
Sbjct: 135 SFHYIKRLLETLFVHRFSHGTMPLRNIFKNCTYYWGFAAWMAYYINHPLYT 185



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>CBIO2_HALSA (Q9HPH7) Putative cobalt import ATP-binding protein cbiO 2|
          Length = 242

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 399 VIEDGVDDKRADVFPEEERAVVDLRA*IFEDY 304
           V+EDGV D R D   +   A  DLR+ +F+D+
Sbjct: 205 VLEDGVIDYRGDTLSQSLAAEYDLRSYVFDDW 236



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>O51I1_HUMAN (Q9H343) Olfactory receptor 51I1 (Odorant receptor HOR5'beta11)|
           (Olfactory receptor OR11-39)
          Length = 314

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +1

Query: 343 TLFFWEYVGPLIIYPIFYYLPVYKY--FGYEGERVIHPVQTYAMYYFCFHYFKRIMETFF 516
           TL FWE   P +  P++Y+L +      G     +   + T+   Y    +   +++ FF
Sbjct: 49  TLVFWE---PALHQPMYYFLSMLALNDLGVSFSTLPTVISTFCFNYNHVAFNACLVQMFF 105

Query: 517 VHRFSHATSPV 549
           +H FS   S +
Sbjct: 106 IHTFSFMESGI 116


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,067,269
Number of Sequences: 219361
Number of extensions: 1475599
Number of successful extensions: 4012
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4006
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5824436538
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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