ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd12m09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PEX11_YEAST (Q12462) Peroxisomal membrane protein PMP27 (Peroxin... 30 1.2
2KRA13_HUMAN (Q8IUG1) Keratin-associated protein 1-3 (Keratin-ass... 30 1.5
3KRA11_HUMAN (Q07627) Keratin-associated protein 1-1 (Keratin-ass... 30 2.0
4SREC_HUMAN (Q14162) Endothelial cells scavenger receptor precurs... 30 2.0
5MRCKG_MOUSE (Q80UW5) Serine/threonine-protein kinase MRCK gamma ... 29 3.4
6TYRO_STRGA (P06845) Tyrosinase (EC 1.14.18.1) (Monophenol monoox... 28 4.4
7KR410_HUMAN (Q9BYQ7) Keratin-associated protein 4-10 (Keratin-as... 28 5.8
8ARGB_SHEON (P59301) Acetylglutamate kinase (EC 2.7.2.8) (NAG kin... 28 5.8
9CABIN_HUMAN (Q9Y6J0) Calcineurin-binding protein Cabin 1 (Calcin... 28 5.8
10DHM1_PARDE (P12293) Methanol dehydrogenase subunit 1 precursor (... 28 5.8
11E131_ARATH (O65399) Putative glucan endo-1,3-beta-glucosidase 1 ... 28 7.6
12TYRO_STRAL (P55022) Tyrosinase (EC 1.14.18.1) (Monophenol monoox... 28 7.6
13KRA15_HUMAN (Q9BYS1) Keratin-associated protein 1-5 (Keratin-ass... 28 7.6
14GCR_PAROL (O73673) Glucocorticoid receptor (GR) 27 9.9
15PX11B_MOUSE (Q9Z210) Peroxisomal membrane protein 11B (Peroxin-1... 27 9.9
16PX11B_HUMAN (O96011) Peroxisomal membrane protein 11B (Peroxin-1... 27 9.9

>PEX11_YEAST (Q12462) Peroxisomal membrane protein PMP27 (Peroxin-11)|
          Length = 235

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
 Frame = +3

Query: 27  VLYLNKAEARDKICRAIQYGSKFIS-NGQPGTXQNVDKSTTLARKVFRLLKWVNDLHAL- 200
           V +L+ +  R+K+ R +QY ++F++        + +    T  RK  R LK +N L A  
Sbjct: 15  VKFLDGSAGREKVLRLLQYLARFLAVQNSSLLARQLQAQFTTVRKFLRFLKPLNHLQAAA 74

Query: 201 -IXPAXXGTPLTLVLLXKSKNALLSTFLFLDQ 293
                   +   + +    KN   + +L LDQ
Sbjct: 75  KFYDNKLASDNVVRVCNVLKNIFFAAYLSLDQ 106



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>KRA13_HUMAN (Q8IUG1) Keratin-associated protein 1-3 (Keratin-associated protein|
           1.8) (Keratin-associated protein 1.9)
          Length = 177

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +1

Query: 265 CCRPSCSWTSSCG*G 309
           CC+PSC  TSSCG G
Sbjct: 80  CCQPSCCQTSSCGTG 94



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>KRA11_HUMAN (Q07627) Keratin-associated protein 1-1 (Keratin-associated protein|
           1.1) (High sulfur keratin-associated protein 1.1)
           (Keratin-associated protein 1.6) (Keratin-associated
           protein 1.7)
          Length = 177

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +1

Query: 265 CCRPSCSWTSSCG*G 309
           CC+PSC  TSSCG G
Sbjct: 80  CCQPSCYQTSSCGTG 94



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>SREC_HUMAN (Q14162) Endothelial cells scavenger receptor precursor (Acetyl LDL|
           receptor) (Scavenger receptor class F member 1)
          Length = 830

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 4/23 (17%)
 Frame = -2

Query: 156 CEPRWW--TCRRSARC--LAGRC 100
           CEP WW  TCRR  +C   A RC
Sbjct: 150 CEPGWWSSTCRRPCQCNTAAARC 172



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>MRCKG_MOUSE (Q80UW5) Serine/threonine-protein kinase MRCK gamma (EC 2.7.11.1)|
            (CDC42-binding protein kinase gamma) (Myotonic dystrophy
            kinase-related CDC42-binding kinase gamma) (Myotonic
            dystrophy protein kinase-like alpha) (MRCK gamma)
            (DMPK-like gamma
          Length = 1551

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 27/94 (28%), Positives = 35/94 (37%), Gaps = 3/94 (3%)
 Frame = -3

Query: 278  EGRQQSILGLXKQDQCXRGAXXGWXDESMKIVHPL*EPEDLASQG-GGLVDVLXGA--WL 108
            EGR  +  G   Q+Q  RGA                 P    S G  G  D L     W 
Sbjct: 1452 EGRPNTRDGTRAQEQKSRGARSSGPQRPHSFSEAFRRPVSTGSDGLPGETDPLVKRKPWT 1511

Query: 107  AVADELGAVLDGPADLVPSLRLVQVQHRQAQLPP 6
            +++ E  +   G   L P+  L+QV  R   LPP
Sbjct: 1512 SLSSESVSCPQG--SLSPAASLIQVSERPRSLPP 1543



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>TYRO_STRGA (P06845) Tyrosinase (EC 1.14.18.1) (Monophenol monooxygenase)|
          Length = 273

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 316 PDLPSHTNWSRNKKVDSRAFLDFXSRTSVRGVPXXA 209
           P   S  NW  N +VD RA+L     T+VR +P  A
Sbjct: 118 PFAASAGNWPINVRVDGRAYLRRSLGTAVRELPTRA 153



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>KR410_HUMAN (Q9BYQ7) Keratin-associated protein 4-10 (Keratin-associated|
           protein 4.10) (Ultrahigh sulfur keratin-associated
           protein 4.10)
          Length = 127

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 238 SCLXSPRMLCCRPSCSWTSSC 300
           SC+ S    CCRPSCS T+ C
Sbjct: 38  SCVVSS---CCRPSCSQTTCC 55



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>ARGB_SHEON (P59301) Acetylglutamate kinase (EC 2.7.2.8) (NAG kinase) (AGK)|
           (N-acetyl-L-glutamate 5-phosphotransferase)
          Length = 260

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 155 ASQGGGLVDVLXGAWLAVADELGAVLDGPADLVPSLRLVQV 33
           A Q   ++  L G  L +  ++  VLDG   L+PSL   Q+
Sbjct: 163 ADQAATVLAKLVGGKLVLLSDVSGVLDGKGQLIPSLNGQQI 203



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>CABIN_HUMAN (Q9Y6J0) Calcineurin-binding protein Cabin 1 (Calcineurin inhibitor)|
            (CAIN)
          Length = 2220

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 302  PHELVQEQEGRQQSILGLXKQDQCXRGAXXGWXDESMKIVH 180
            P ELVQ+ EGR+ S+L   K          G  DE   ++H
Sbjct: 1169 PPELVQQMEGRRDSMLETAKHCFTSAARCEGDGDEEEWLIH 1209



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>DHM1_PARDE (P12293) Methanol dehydrogenase subunit 1 precursor (EC 1.1.99.8)|
           (MDH large alpha subunit) (MEDH)
          Length = 631

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 17/74 (22%), Positives = 33/74 (44%)
 Frame = +3

Query: 15  LGLAVLYLNKAEARDKICRAIQYGSKFISNGQPGTXQNVDKSTTLARKVFRLLKWVNDLH 194
           +GLAVL    A A D++    +  + ++  G+    QN  + T + ++  + L+      
Sbjct: 20  MGLAVLTTAPATANDQLVELAKDPANWVMTGRDYNAQNYSEMTDINKENVKQLRPAWSFS 79

Query: 195 ALIXPAXXGTPLTL 236
             +     GTPL +
Sbjct: 80  TGVLHGHEGTPLVV 93



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>E131_ARATH (O65399) Putative glucan endo-1,3-beta-glucosidase 1 precursor (EC|
           3.2.1.39) ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
           (Beta-1,3-glucanase)
          Length = 402

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 163 KTLRAKVVDLSTFCXVPGWPLLMNLEPYWMALQ 65
           +T  + +V L  F    G PL+MNL PY++ +Q
Sbjct: 84  QTWHSIMVPLLQFLSKTGSPLMMNLYPYYVYMQ 116



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>TYRO_STRAL (P55022) Tyrosinase (EC 1.14.18.1) (Monophenol monooxygenase)|
          Length = 275

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -1

Query: 316 PDLPSHTNWSRNKKVDSRAFLDFXSRTSVRGVPXXA 209
           P   S  NW  N +VD R FL     T VR +P  A
Sbjct: 121 PFAASTGNWPVNVRVDGRTFLRRSLGTGVRELPTRA 156



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>KRA15_HUMAN (Q9BYS1) Keratin-associated protein 1-5 (Keratin-associated protein|
           1.5) (High sulfur keratin-associated protein 1.5)
          Length = 174

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 265 CCRPSCSWTSSCG*G 309
           CC+PSC   SSCG G
Sbjct: 80  CCQPSCCQISSCGTG 94



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>GCR_PAROL (O73673) Glucocorticoid receptor (GR)|
          Length = 807

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 68  QGHPVRLQVHQQRPARHRAERRQVHHLGSQGLQAPKV 178
           Q HP++   HQQ+  RH  + +Q H L  Q  Q P +
Sbjct: 253 QQHPLQHHQHQQQQHRHLLQHQQ-HQLHHQHQQPPSL 288



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>PX11B_MOUSE (Q9Z210) Peroxisomal membrane protein 11B (Peroxin-11B)|
           (Peroxisomal biogenesis factor 11B) (PEX11beta)
           (Pex11pbeta)
          Length = 259

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 9/106 (8%)
 Frame = +3

Query: 27  VLYLNKAEARDKICRAIQYGSKFISNG--QPGTXQNVDKS-------TTLARKVFRLLKW 179
           V +  +++AR+++CRA QY    + +   + G    + K         +L RK+ RL   
Sbjct: 5   VRFSAQSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLEGHLSLGRKLLRLGNS 64

Query: 180 VNDLHALIXPAXXGTPLTLVLLXKSKNALLSTFLFLDQFVWLGRSG 317
            + L +    A   + + L       +   + +   D  +W G+SG
Sbjct: 65  TDALES-AKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSG 109



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>PX11B_HUMAN (O96011) Peroxisomal membrane protein 11B (Peroxin-11B)|
           (Peroxisomal biogenesis factor 11B) (PEX11beta)
           (Pex11pbeta)
          Length = 259

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 9/106 (8%)
 Frame = +3

Query: 27  VLYLNKAEARDKICRAIQYGSKFISNG--QPGTXQNVDKS-------TTLARKVFRLLKW 179
           V +  +++AR+++CRA QY    + +   + G    + K         +L RK+ RL   
Sbjct: 5   VRFSAQSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLESHLSLGRKLLRLGNS 64

Query: 180 VNDLHALIXPAXXGTPLTLVLLXKSKNALLSTFLFLDQFVWLGRSG 317
            + L +    A   + + L       +   + +   D  +W G+SG
Sbjct: 65  ADALES-AKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSG 109


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,630,134
Number of Sequences: 219361
Number of extensions: 618942
Number of successful extensions: 2412
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2409
length of database: 80,573,946
effective HSP length: 81
effective length of database: 62,805,705
effective search space used: 1507336920
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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