| Clone Name | basd12m09 |
|---|---|
| Clone Library Name | barley_pub |
>PEX11_YEAST (Q12462) Peroxisomal membrane protein PMP27 (Peroxin-11)| Length = 235 Score = 30.4 bits (67), Expect = 1.2 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 3/92 (3%) Frame = +3 Query: 27 VLYLNKAEARDKICRAIQYGSKFIS-NGQPGTXQNVDKSTTLARKVFRLLKWVNDLHAL- 200 V +L+ + R+K+ R +QY ++F++ + + T RK R LK +N L A Sbjct: 15 VKFLDGSAGREKVLRLLQYLARFLAVQNSSLLARQLQAQFTTVRKFLRFLKPLNHLQAAA 74 Query: 201 -IXPAXXGTPLTLVLLXKSKNALLSTFLFLDQ 293 + + + KN + +L LDQ Sbjct: 75 KFYDNKLASDNVVRVCNVLKNIFFAAYLSLDQ 106
>KRA13_HUMAN (Q8IUG1) Keratin-associated protein 1-3 (Keratin-associated protein| 1.8) (Keratin-associated protein 1.9) Length = 177 Score = 30.0 bits (66), Expect = 1.5 Identities = 11/15 (73%), Positives = 12/15 (80%) Frame = +1 Query: 265 CCRPSCSWTSSCG*G 309 CC+PSC TSSCG G Sbjct: 80 CCQPSCCQTSSCGTG 94
>KRA11_HUMAN (Q07627) Keratin-associated protein 1-1 (Keratin-associated protein| 1.1) (High sulfur keratin-associated protein 1.1) (Keratin-associated protein 1.6) (Keratin-associated protein 1.7) Length = 177 Score = 29.6 bits (65), Expect = 2.0 Identities = 11/15 (73%), Positives = 12/15 (80%) Frame = +1 Query: 265 CCRPSCSWTSSCG*G 309 CC+PSC TSSCG G Sbjct: 80 CCQPSCYQTSSCGTG 94
>SREC_HUMAN (Q14162) Endothelial cells scavenger receptor precursor (Acetyl LDL| receptor) (Scavenger receptor class F member 1) Length = 830 Score = 29.6 bits (65), Expect = 2.0 Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 4/23 (17%) Frame = -2 Query: 156 CEPRWW--TCRRSARC--LAGRC 100 CEP WW TCRR +C A RC Sbjct: 150 CEPGWWSSTCRRPCQCNTAAARC 172
>MRCKG_MOUSE (Q80UW5) Serine/threonine-protein kinase MRCK gamma (EC 2.7.11.1)| (CDC42-binding protein kinase gamma) (Myotonic dystrophy kinase-related CDC42-binding kinase gamma) (Myotonic dystrophy protein kinase-like alpha) (MRCK gamma) (DMPK-like gamma Length = 1551 Score = 28.9 bits (63), Expect = 3.4 Identities = 27/94 (28%), Positives = 35/94 (37%), Gaps = 3/94 (3%) Frame = -3 Query: 278 EGRQQSILGLXKQDQCXRGAXXGWXDESMKIVHPL*EPEDLASQG-GGLVDVLXGA--WL 108 EGR + G Q+Q RGA P S G G D L W Sbjct: 1452 EGRPNTRDGTRAQEQKSRGARSSGPQRPHSFSEAFRRPVSTGSDGLPGETDPLVKRKPWT 1511 Query: 107 AVADELGAVLDGPADLVPSLRLVQVQHRQAQLPP 6 +++ E + G L P+ L+QV R LPP Sbjct: 1512 SLSSESVSCPQG--SLSPAASLIQVSERPRSLPP 1543
>TYRO_STRGA (P06845) Tyrosinase (EC 1.14.18.1) (Monophenol monooxygenase)| Length = 273 Score = 28.5 bits (62), Expect = 4.4 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = -1 Query: 316 PDLPSHTNWSRNKKVDSRAFLDFXSRTSVRGVPXXA 209 P S NW N +VD RA+L T+VR +P A Sbjct: 118 PFAASAGNWPINVRVDGRAYLRRSLGTAVRELPTRA 153
>KR410_HUMAN (Q9BYQ7) Keratin-associated protein 4-10 (Keratin-associated| protein 4.10) (Ultrahigh sulfur keratin-associated protein 4.10) Length = 127 Score = 28.1 bits (61), Expect = 5.8 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +1 Query: 238 SCLXSPRMLCCRPSCSWTSSC 300 SC+ S CCRPSCS T+ C Sbjct: 38 SCVVSS---CCRPSCSQTTCC 55
>ARGB_SHEON (P59301) Acetylglutamate kinase (EC 2.7.2.8) (NAG kinase) (AGK)| (N-acetyl-L-glutamate 5-phosphotransferase) Length = 260 Score = 28.1 bits (61), Expect = 5.8 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = -3 Query: 155 ASQGGGLVDVLXGAWLAVADELGAVLDGPADLVPSLRLVQV 33 A Q ++ L G L + ++ VLDG L+PSL Q+ Sbjct: 163 ADQAATVLAKLVGGKLVLLSDVSGVLDGKGQLIPSLNGQQI 203
>CABIN_HUMAN (Q9Y6J0) Calcineurin-binding protein Cabin 1 (Calcineurin inhibitor)| (CAIN) Length = 2220 Score = 28.1 bits (61), Expect = 5.8 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = -3 Query: 302 PHELVQEQEGRQQSILGLXKQDQCXRGAXXGWXDESMKIVH 180 P ELVQ+ EGR+ S+L K G DE ++H Sbjct: 1169 PPELVQQMEGRRDSMLETAKHCFTSAARCEGDGDEEEWLIH 1209
>DHM1_PARDE (P12293) Methanol dehydrogenase subunit 1 precursor (EC 1.1.99.8)| (MDH large alpha subunit) (MEDH) Length = 631 Score = 28.1 bits (61), Expect = 5.8 Identities = 17/74 (22%), Positives = 33/74 (44%) Frame = +3 Query: 15 LGLAVLYLNKAEARDKICRAIQYGSKFISNGQPGTXQNVDKSTTLARKVFRLLKWVNDLH 194 +GLAVL A A D++ + + ++ G+ QN + T + ++ + L+ Sbjct: 20 MGLAVLTTAPATANDQLVELAKDPANWVMTGRDYNAQNYSEMTDINKENVKQLRPAWSFS 79 Query: 195 ALIXPAXXGTPLTL 236 + GTPL + Sbjct: 80 TGVLHGHEGTPLVV 93
>E131_ARATH (O65399) Putative glucan endo-1,3-beta-glucosidase 1 precursor (EC| 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) (Beta-1,3-glucanase) Length = 402 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = -1 Query: 163 KTLRAKVVDLSTFCXVPGWPLLMNLEPYWMALQ 65 +T + +V L F G PL+MNL PY++ +Q Sbjct: 84 QTWHSIMVPLLQFLSKTGSPLMMNLYPYYVYMQ 116
>TYRO_STRAL (P55022) Tyrosinase (EC 1.14.18.1) (Monophenol monooxygenase)| Length = 275 Score = 27.7 bits (60), Expect = 7.6 Identities = 15/36 (41%), Positives = 17/36 (47%) Frame = -1 Query: 316 PDLPSHTNWSRNKKVDSRAFLDFXSRTSVRGVPXXA 209 P S NW N +VD R FL T VR +P A Sbjct: 121 PFAASTGNWPVNVRVDGRTFLRRSLGTGVRELPTRA 156
>KRA15_HUMAN (Q9BYS1) Keratin-associated protein 1-5 (Keratin-associated protein| 1.5) (High sulfur keratin-associated protein 1.5) Length = 174 Score = 27.7 bits (60), Expect = 7.6 Identities = 10/15 (66%), Positives = 11/15 (73%) Frame = +1 Query: 265 CCRPSCSWTSSCG*G 309 CC+PSC SSCG G Sbjct: 80 CCQPSCCQISSCGTG 94
>GCR_PAROL (O73673) Glucocorticoid receptor (GR)| Length = 807 Score = 27.3 bits (59), Expect = 9.9 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = +2 Query: 68 QGHPVRLQVHQQRPARHRAERRQVHHLGSQGLQAPKV 178 Q HP++ HQQ+ RH + +Q H L Q Q P + Sbjct: 253 QQHPLQHHQHQQQQHRHLLQHQQ-HQLHHQHQQPPSL 288
>PX11B_MOUSE (Q9Z210) Peroxisomal membrane protein 11B (Peroxin-11B)| (Peroxisomal biogenesis factor 11B) (PEX11beta) (Pex11pbeta) Length = 259 Score = 27.3 bits (59), Expect = 9.9 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 9/106 (8%) Frame = +3 Query: 27 VLYLNKAEARDKICRAIQYGSKFISNG--QPGTXQNVDKS-------TTLARKVFRLLKW 179 V + +++AR+++CRA QY + + + G + K +L RK+ RL Sbjct: 5 VRFSAQSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLEGHLSLGRKLLRLGNS 64 Query: 180 VNDLHALIXPAXXGTPLTLVLLXKSKNALLSTFLFLDQFVWLGRSG 317 + L + A + + L + + + D +W G+SG Sbjct: 65 TDALES-AKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSG 109
>PX11B_HUMAN (O96011) Peroxisomal membrane protein 11B (Peroxin-11B)| (Peroxisomal biogenesis factor 11B) (PEX11beta) (Pex11pbeta) Length = 259 Score = 27.3 bits (59), Expect = 9.9 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 9/106 (8%) Frame = +3 Query: 27 VLYLNKAEARDKICRAIQYGSKFISNG--QPGTXQNVDKS-------TTLARKVFRLLKW 179 V + +++AR+++CRA QY + + + G + K +L RK+ RL Sbjct: 5 VRFSAQSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLESHLSLGRKLLRLGNS 64 Query: 180 VNDLHALIXPAXXGTPLTLVLLXKSKNALLSTFLFLDQFVWLGRSG 317 + L + A + + L + + + D +W G+SG Sbjct: 65 ADALES-AKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSG 109 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,630,134 Number of Sequences: 219361 Number of extensions: 618942 Number of successful extensions: 2412 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2115 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2409 length of database: 80,573,946 effective HSP length: 81 effective length of database: 62,805,705 effective search space used: 1507336920 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)